Polysome/pyproject.toml at main · computationalpathologygroup/Polysome · GitHub

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[build-system]
requires = [
  "setuptools>=78.1.0",
] # Or another build backend like hatchling, flit
build-backend = "setuptools.build_meta"

[project]
name = "polysome" # Choose a name for your installable package
version = "0.1.1"
authors = [{ name = "Sander Moonemans", email = "sander.moonemans@radboudumc.nl" }]
description = "A domain-agnostic framework for orchestrating LLM-based data generation workflows"
readme = "README.md" # Optional: Path to your README file
requires-python = ">=3.10" # Specify compatible Python versions
license = { text = "MIT" }
keywords = ["llm", "data-generation", "machine-learning", "workflow", "instruction-tuning"]
classifiers = [ # Optional: PyPI classifiers
  "Programming Language :: Python :: 3",
  "Programming Language :: Python :: 3.10",
  "Programming Language :: Python :: 3.11",
  "Programming Language :: Python :: 3.12",
  "License :: OSI Approved :: MIT License",
  "Operating System :: OS Independent",
  "Development Status :: 4 - Beta",
  "Intended Audience :: Science/Research",
  "Topic :: Scientific/Engineering :: Artificial Intelligence",
]
dependencies = [
  "python-dotenv",
  "pandas==2.2.3",
  "pandas-stubs==2.2.3.250308",
  "openpyxl==3.1.5",
  "transformers==4.51.3",
  "torch>=2.0.0",
  "accelerate>=0.26.0",
  "jinja2>=3.0.0",
  "tqdm>=4.65.0",
]

[project.urls]
Homepage = "https://github.com/computationalpathologygroup/Polysome"
Repository = "https://github.com/computationalpathologygroup/Polysome"
Issues = "https://github.com/computationalpathologygroup/Polysome/issues"

[project.scripts]
polysome = "polysome.cli:main"
polysome-gui = "polysome.cli:run_gui"

[project.optional-dependencies]
dev = [
  "pytest==8.3.5",
  "pytest-mock==3.14.0",
  "pytest-cov>=4.0.0",
  "pytest-xdist>=3.0.0",
]
ui = [
  "streamlit",
]
vllm = [
  "vllm>=0.8.0; platform_system == 'Linux'",
]
llama-cpp = [
  "llama-cpp-python>=0.2.0",
]
# 'gpu' is a convenience alias for the fastest inference stack on Linux
gpu = [
  "polysome[vllm]",
]
# 'cpu' is a convenience alias for quantized local inference
cpu = [
  "polysome[llama-cpp]",
]
gpu-dev = [
  "polysome[gpu,dev]",
]
cpu-dev = [
  "polysome[cpu,dev]",
]
# 'all' installs everything for dev/testing
all = [
  "polysome[vllm,llama-cpp,ui,dev]",
]

[tool.setuptools.packages.find]
where = [
  "src",
] # Tells setuptools to look for packages inside the 'src' directory

[tool.setuptools.package-data]
polysome = [
  "templates/workflows/*.json",
  "templates/prompts/*/*.txt",
  "templates/prompts/*/*.jsonl",
]