clang changes

Signed-off-by: AdityaPandeyCN <adityapand3y666@gmail.com>

Author: AdityaPandeyCN

src/ramcore/RAMNTupleView.cxx

@@ -3,7 +3,7 @@
 #include <cstdint>
 #include <cstring>
 #include <iostream>
-#include <limits> // NOLINT(misc-include-cleaner)
+#include <limits> 
 #include <string>
 
 #include <ROOT/RNTuple.hxx>
@@ -182,3 +182,4 @@ Long64_t ramntupleview(const char *file, const char *query, bool cache, bool per
    std::cout << "Found " << static_cast<long long>(count) << " records in region " << (query ? query : "") << std::endl;
    return count;
 }
+

src/ramcore/SamToNTuple.cxx

@@ -2,15 +2,16 @@
 #include "ramcore/SamParser.h"
 #include "rntuple/RAMNTupleRecord.h"
 
+#include <algorithm>
 #include <cstdint>
+#include <cstdio>
 #include <map>
 #include <memory>
-#include <cstdio>
-#include <thread>
-#include <vector>
 #include <mutex>
-#include <algorithm>
+#include <string>
+#include <thread>
 #include <unordered_set>
+#include <vector>
 
 #include <ROOT/RNTupleModel.hxx>
 #include <ROOT/RNTupleWriter.hxx>
@@ -23,7 +24,7 @@
 #include <TFile.h>
 #include <TROOT.h>
 
-void samtoramntuple(const char *datafile, const char *treefile, bool index, bool split, bool cache,
+void samtoramntuple(const char *datafile, const char *treefile, bool index, bool split, bool cache, // NOLINT(misc-use-internal-linkage)
                     int compression_algorithm, uint32_t quality_policy)
 {
    (void)split;
@@ -126,7 +127,7 @@ void samtoramntuple(const char *datafile, const char *treefile, bool index, bool
    };
 
    if (!parser.ParseFile(datafile, header_callback, record_callback)) {
-      printf("Failed to parse SAM file %s\n", datafile);
+      std::cerr << "Failed to parse SAM file " << datafile << std::endl;
       return;
    }
 
@@ -298,3 +299,4 @@ void samtoramntuple_split_by_chromosome(const char *datafile, const char *output
       }
    }
 }
+