From e8fad549d2ccdfa4fef156a0cdfee68b751550ff Mon Sep 17 00:00:00 2001
From: Celine Lee <celine.y.lee@gmail.com>
Date: Tue, 17 Jun 2025 09:01:24 -0400
Subject: [PATCH 1/2] some minor fixes

---
 scripts/small_repos/run_claude.sh | 17 ++++++++++-------
 scripts/small_repos/run_codex.sh  | 15 +++++++++------
 2 files changed, 19 insertions(+), 13 deletions(-)

diff --git a/scripts/small_repos/run_claude.sh b/scripts/small_repos/run_claude.sh
index 9f1a1c1e7..fe3651310 100644
--- a/scripts/small_repos/run_claude.sh
+++ b/scripts/small_repos/run_claude.sh
@@ -9,7 +9,7 @@ if [ $# -ne 1 ]; then
 fi
 
 directory="$1"
-MODEL="codex-mini-latest"
+ANTHROPIC_MODEL="claude-3-7-sonnet-20250219"
 
 if [ ! -d "$directory" ]; then
     echo "Error: Directory '$directory' does not exist"
@@ -39,8 +39,9 @@ echo "Following the instructions in $base_dir/REFACTOR_INSTRUCTIONS.md..."
 
 echo "Running claude planner"
 # Claude plan
-claude --dangerously-skip-permissions -p \
-  "Follow the instructions in ../../../prompts/REFACTOR_INSTRUCTIONS.md. Only write PLAN.md. Give the file structure. Do not implement any code. Do not give example usage code."
+claude --dangerously-skip-permissions -p <<EOF
+Read the instructions in ../../../prompts/REFACTOR_INSTRUCTIONS.md. Follow the implementation plan and file structure proposed in PLAN.md. IMPORTANT: Create, modify, and reference files ONLY in this current working subdirectory ($new_directory/unified) and nowhere else. Do NOT import from any other subdirectories in $new_directory except for what is here in unified/. Implement ALL code and update ALL test file imports until this whole subfolder is a functional standalone repository. Do not stop to ask for confirmation; keep going until the final implementation passes all tests using pytest tests/.
+EOF
 
 # Setup testing environment
 uv venv
@@ -49,8 +50,9 @@ uv pip install -e .
 
 echo "Running claude impl"
 # Claude implement
-claude --dangerously-skip-permissions -p \
-  "Read the instructions in ../../../prompts/REFACTOR_INSTRUCTIONS.md. Follow the implementation plan and file structure proposed in PLAN.md. IMPORTANT: Create, modify, and reference files ONLY in this current working subdirectory ($new_directory/unified) and nowhere else. Do NOT import from any other subdirectories in $new_directory except for what is here in unified/. Implement ALL code and update ALL test file imports until this whole subfolder is a functional standalone repository. Do not stop to ask for confirmation; keep going until the final implementation passes all tests using pytest tests/."
+claude --dangerously-skip-permissions -p <<EOF
+Read the instructions in ../../../prompts/REFACTOR_INSTRUCTIONS.md. Follow the implementation plan and file structure proposed in PLAN.md. IMPORTANT: Create, modify, and reference files ONLY in this current working subdirectory ($new_directory/unified) and nowhere else. Do NOT import from any other subdirectories in $new_directory except for what is here in unified/. Implement ALL code and update ALL test file imports until this whole subfolder is a functional standalone repository. Do not stop to ask for confirmation; keep going until the final implementation passes all tests using pytest tests/.
+EOF
 
 popd >/dev/null
 # Now that it's been refactored, remove all original persona subdirs
@@ -70,8 +72,9 @@ pytest tests/ --json-report --json-report-file=report.json --continue-on-collect
 
 echo "Running final-check claude impl"
 # claude implement
-claude --dangerously-skip-permissions -p \
-  "Read the pytest results in test_output.txt. If they indicate pytest failures, fix them. Stick to the implementation plan and file structure proposed in PLAN.md. IMPORTANT: Create and modify files ONLY in this current working subdirectory ($new_directory/unified) and nowhere else. Implement ALL code and update ALL test file imports until this whole subfolder is a functional standalone repository. Do not stop to ask for confirmation; keep going until the final implementation passes all tests using pytest tests/. If there are no errors, exit."
+claude --dangerously-skip-permissions -p <<EOF
+Read the pytest results in test_output.txt. If they indicate pytest failures, fix them. Stick to the implementation plan and file structure proposed in PLAN.md. IMPORTANT: Create and modify files ONLY in this current working subdirectory ($new_directory/unified) and nowhere else. Implement ALL code and update ALL test file imports until this whole subfolder is a functional standalone repository. Do not stop to ask for confirmation; keep going until the final implementation passes all tests using pytest tests/. If there are no errors, exit.
+EOF
 
 pytest tests/ --json-report --json-report-file=report.json --continue-on-collection-errors > test_output.txt 2>&1
 deactivate
diff --git a/scripts/small_repos/run_codex.sh b/scripts/small_repos/run_codex.sh
index 139133a1d..c44c94ce0 100644
--- a/scripts/small_repos/run_codex.sh
+++ b/scripts/small_repos/run_codex.sh
@@ -41,8 +41,9 @@ echo "Following the instructions in $base_dir/prompts/REFACTOR_INSTRUCTIONS.md..
 
 echo "Running codex planner"
 # Codex plan
-codex --approval-mode full-auto -q \
-  "Follow the instructions in ../../../prompts/REFACTOR_INSTRUCTIONS.md. Only write PLAN.md. Give the file structure. Do not implement any code. Do not give example usage code."
+codex --approval-mode full-auto -q <<EOF
+Follow the instructions in ../../../prompts/REFACTOR_INSTRUCTIONS.md. Only write PLAN.md. Give the file structure. Do not implement any code. Do not give example usage code.
+EOF
 
 # Setup testing environment
 uv venv
@@ -51,8 +52,9 @@ uv pip install -e .
 
 echo "Running codex impl"
 # Codex implement
-codex --approval-mode full-auto -q \
-  "Read the instructions in ../../../prompts/REFACTOR_INSTRUCTIONS.md. Follow the implementation plan and file structure proposed in PLAN.md. IMPORTANT: Create, modify, and reference files ONLY in this current working subdirectory ($new_directory/unified) and nowhere else. Do NOT import from any other subdirectories in $new_directory except for what is here in unified/. Implement ALL code and update ALL test file imports until this whole subfolder is a functional standalone repository. Do not stop to ask for confirmation; keep going until the final implementation passes all tests using pytest tests/."
+codex --approval-mode full-auto -q <<EOF
+Read the instructions in ../../../prompts/REFACTOR_INSTRUCTIONS.md. Follow the implementation plan and file structure proposed in PLAN.md. IMPORTANT: Create, modify, and reference files ONLY in this current working subdirectory ($new_directory/unified) and nowhere else. Do NOT import from any other subdirectories in $new_directory except for what is here in unified/. Implement ALL code and update ALL test file imports until this whole subfolder is a functional standalone repository. Do not stop to ask for confirmation; keep going until the final implementation passes all tests using pytest tests/.
+EOF
 
 popd >/dev/null
 # Now that it's been refactored, remove all original persona subdirs
@@ -71,8 +73,9 @@ pytest tests/ --json-report --json-report-file=report.json --continue-on-collect
 
 echo "Running final-check codex impl"
 # Codex implement
-codex --approval-mode full-auto -q \
-  "Read the pytest results in test_output.txt. If they indicate pytest failures, fix them. Stick to the implementation plan and file structure proposed in PLAN.md. IMPORTANT: Create and modify files ONLY in this current working subdirectory ($new_directory/unified) and nowhere else. Implement ALL code and update ALL test file imports until this whole subfolder is a functional standalone repository. Do not stop to ask for confirmation; keep going until the final implementation passes all tests using pytest tests/. If there are no errors, exit."
+codex --approval-mode full-auto -q <<EOF
+Read the pytest results in test_output.txt. If they indicate pytest failures, fix them. Stick to the implementation plan and file structure proposed in PLAN.md. IMPORTANT: Create and modify files ONLY in this current working subdirectory ($new_directory/unified) and nowhere else. Implement ALL code and update ALL test file imports until this whole subfolder is a functional standalone repository. Do not stop to ask for confirmation; keep going until the final implementation passes all tests using pytest tests/. If there are no errors, exit.
+EOF
 
 pytest tests/ --json-report --json-report-file=report.json --continue-on-collection-errors > test_output.txt 2>&1
 deactivate

From 283cba516490cf973c3c35625ae2ef51768c6283 Mon Sep 17 00:00:00 2001
From: Celine Lee <celine.y.lee@gmail.com>
Date: Tue, 17 Jun 2025 09:33:09 -0400
Subject: [PATCH 2/2] codex line preferences

---
 scripts/small_repos/run_codex.sh | 12 +++---------
 1 file changed, 3 insertions(+), 9 deletions(-)

diff --git a/scripts/small_repos/run_codex.sh b/scripts/small_repos/run_codex.sh
index c44c94ce0..4f3f9fda4 100644
--- a/scripts/small_repos/run_codex.sh
+++ b/scripts/small_repos/run_codex.sh
@@ -41,9 +41,7 @@ echo "Following the instructions in $base_dir/prompts/REFACTOR_INSTRUCTIONS.md..
 
 echo "Running codex planner"
 # Codex plan
-codex --approval-mode full-auto -q <<EOF
-Follow the instructions in ../../../prompts/REFACTOR_INSTRUCTIONS.md. Only write PLAN.md. Give the file structure. Do not implement any code. Do not give example usage code.
-EOF
+codex --approval-mode full-auto -q "Follow the instructions in ../../../prompts/REFACTOR_INSTRUCTIONS.md. Only write PLAN.md. Give the file structure. Do not implement any code. Do not give example usage code."
 
 # Setup testing environment
 uv venv
@@ -52,9 +50,7 @@ uv pip install -e .
 
 echo "Running codex impl"
 # Codex implement
-codex --approval-mode full-auto -q <<EOF
-Read the instructions in ../../../prompts/REFACTOR_INSTRUCTIONS.md. Follow the implementation plan and file structure proposed in PLAN.md. IMPORTANT: Create, modify, and reference files ONLY in this current working subdirectory ($new_directory/unified) and nowhere else. Do NOT import from any other subdirectories in $new_directory except for what is here in unified/. Implement ALL code and update ALL test file imports until this whole subfolder is a functional standalone repository. Do not stop to ask for confirmation; keep going until the final implementation passes all tests using pytest tests/.
-EOF
+codex --approval-mode full-auto -q "Read the instructions in ../../../prompts/REFACTOR_INSTRUCTIONS.md. Follow the implementation plan and file structure proposed in PLAN.md. IMPORTANT: Create, modify, and reference files ONLY in this current working subdirectory ($new_directory/unified) and nowhere else. Do NOT import from any other subdirectories in $new_directory except for what is here in unified/. Implement ALL code and update ALL test file imports until this whole subfolder is a functional standalone repository. Do not stop to ask for confirmation; keep going until the final implementation passes all tests using pytest tests/."
 
 popd >/dev/null
 # Now that it's been refactored, remove all original persona subdirs
@@ -73,9 +69,7 @@ pytest tests/ --json-report --json-report-file=report.json --continue-on-collect
 
 echo "Running final-check codex impl"
 # Codex implement
-codex --approval-mode full-auto -q <<EOF
-Read the pytest results in test_output.txt. If they indicate pytest failures, fix them. Stick to the implementation plan and file structure proposed in PLAN.md. IMPORTANT: Create and modify files ONLY in this current working subdirectory ($new_directory/unified) and nowhere else. Implement ALL code and update ALL test file imports until this whole subfolder is a functional standalone repository. Do not stop to ask for confirmation; keep going until the final implementation passes all tests using pytest tests/. If there are no errors, exit.
-EOF
+codex --approval-mode full-auto -q "Read the pytest results in test_output.txt. If they indicate pytest failures, fix them. Stick to the implementation plan and file structure proposed in PLAN.md. IMPORTANT: Create and modify files ONLY in this current working subdirectory ($new_directory/unified) and nowhere else. Implement ALL code and update ALL test file imports until this whole subfolder is a functional standalone repository. Do not stop to ask for confirmation; keep going until the final implementation passes all tests using pytest tests/. If there are no errors, exit."
 
 pytest tests/ --json-report --json-report-file=report.json --continue-on-collection-errors > test_output.txt 2>&1
 deactivate