Bump version to 2.0.0

Author: clemsgrs

pyproject.toml

@@ -23,7 +23,7 @@ warn_unused_configs = true
 no_implicit_reexport = true
 
 [tool.bumpver]
-current_version = "1.4.0"
+current_version = "2.0.0"
 version_pattern = "MAJOR.MINOR.PATCH"
 commit = false       # We do version bumping in CI, not as a commit
 tag = false          # Git tag already exists — we don't auto-tag

setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = slide2vec
-version = 1.4.0
+version = 2.0.0
 description = Embedding of whole slide images with Foundation Models
 author = Clément Grisi
 platforms = unix, linux, osx, cygwin, win32

slide2vec/__init__.py

@@ -1 +1 @@
-__version__ = "1.4.0"
+__version__ = "2.0.0"

slide2vec/configs/conch.yaml

@@ -1,6 +1,6 @@
-csv: "/data/temporary/clement/notebooks/discern/prostate-bladder-breast-debug.csv" # path to csv containing slide paths
+csv: "/data/temporary/clement/discern/multi-organ-1k.csv" # path to csv containing slide paths
 
-output_dir: "output" # output directory
+output_dir: "/data/temporary/clement/discern/slide2vec" # output directory
 
 visualize: true
 
@@ -12,7 +12,7 @@ tiling:
 model:
   level: "tile" # level at which to extract the features ("tile", "region" or "slide")
   name: "conch"
-  batch_size: 1
+  batch_size: 32
 
 speed:
   fp16: true # use mixed precision during model inference