From 06ac09dc8aac8032b19058ad80f5d7436a64de32 Mon Sep 17 00:00:00 2001
From: Edward L Blum <eblum2@alaska.edu>
Date: Fri, 24 Apr 2026 23:04:55 -0800
Subject: [PATCH] Reorganized Repository Contents table to match GitHub list
 order, and standardized folder nomenclature to .  Also removed the
 unnecessary .DS_Store and .gitignore files from repository.

---
 .DS_Store  | Bin 6148 -> 0 bytes
 .gitignore | 207 -----------------------------------------------------
 README.md  |  11 +--
 3 files changed, 6 insertions(+), 212 deletions(-)
 delete mode 100644 .DS_Store
 delete mode 100644 .gitignore

diff --git a/.DS_Store b/.DS_Store
deleted file mode 100644
index 5e639f6bb63a07ee5ed5855b119244ae1bccf43c..0000000000000000000000000000000000000000
GIT binary patch
literal 0
HcmV?d00001

literal 6148
zcmeHK!H&}~5FPIpno=S400?f8xFA%CZC9{bap{(FL?D8e1E7#Jp^Y|;Lz8ZWs!F-T
zfgj-xU%(&m0elH>Y*(-<97-jGR-Vd!_IPG&zsPonh(v!Db%<I-<e)ItE}{C3@Hm$>
z*)f_1P^cI~3TQ}UipgKIwhGIDW#E5ffX{9dr`4yN-r?;2JimTa4AW4`l$TtmH<Zwb
zW;Dg&E`A-lMo;K5Jwk*S-cu@Z{@=ndpc6KQeu6s2FQOux7kQY<5Fx*Wd72dE-rhH{
zvs=4xvF_BJrt``h%ehwu<*euj(-+)(hBbt%b`TyX@!W4+c_6bgNV0gU9Fi!8$;;<S
z7Rh;E&a$XbzMdX%8cxG+-B>L4?;W<?Zl}9!yNgce?m^o<*zYcv4d?33JNKXZC+Q@U
z?|H+x(Qu_HxomI+AJEun(|^rYI_h{sImvlu=hjDtjV7MR!N9QXeE)QOJNf+eX!97+
z)-m$&cKbN>rdcYp5!Sx?D9nYG?HDjzI?e6ESZ~XKW#Ak#!1sfT!q_udX;fDSDwP5N
zYfvjen{x^FaSiqiRvIw^5!w}~U4=<8gm#DCHFiCNl}7DO!XzKU%q&cXBGl}N?<#W=
zJ&m@u3|I!vGO(+=Eq?zW{yG0Y>tuVD0n5O-VnEae-k^^ynYVRqbNtr2D6dgi*sjv3
lTu_<kST*=5zK)^<V=gy<J%g1-Xdw2FfTF=xmVtlDzz?WWt0n*d

diff --git a/.gitignore b/.gitignore
deleted file mode 100644
index b7faf40..0000000
--- a/.gitignore
+++ /dev/null
@@ -1,207 +0,0 @@
-# Byte-compiled / optimized / DLL files
-__pycache__/
-*.py[codz]
-*$py.class
-
-# C extensions
-*.so
-
-# Distribution / packaging
-.Python
-build/
-develop-eggs/
-dist/
-downloads/
-eggs/
-.eggs/
-lib/
-lib64/
-parts/
-sdist/
-var/
-wheels/
-share/python-wheels/
-*.egg-info/
-.installed.cfg
-*.egg
-MANIFEST
-
-# PyInstaller
-#  Usually these files are written by a python script from a template
-#  before PyInstaller builds the exe, so as to inject date/other infos into it.
-*.manifest
-*.spec
-
-# Installer logs
-pip-log.txt
-pip-delete-this-directory.txt
-
-# Unit test / coverage reports
-htmlcov/
-.tox/
-.nox/
-.coverage
-.coverage.*
-.cache
-nosetests.xml
-coverage.xml
-*.cover
-*.py.cover
-.hypothesis/
-.pytest_cache/
-cover/
-
-# Translations
-*.mo
-*.pot
-
-# Django stuff:
-*.log
-local_settings.py
-db.sqlite3
-db.sqlite3-journal
-
-# Flask stuff:
-instance/
-.webassets-cache
-
-# Scrapy stuff:
-.scrapy
-
-# Sphinx documentation
-docs/_build/
-
-# PyBuilder
-.pybuilder/
-target/
-
-# Jupyter Notebook
-.ipynb_checkpoints
-
-# IPython
-profile_default/
-ipython_config.py
-
-# pyenv
-#   For a library or package, you might want to ignore these files since the code is
-#   intended to run in multiple environments; otherwise, check them in:
-# .python-version
-
-# pipenv
-#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
-#   However, in case of collaboration, if having platform-specific dependencies or dependencies
-#   having no cross-platform support, pipenv may install dependencies that don't work, or not
-#   install all needed dependencies.
-#Pipfile.lock
-
-# UV
-#   Similar to Pipfile.lock, it is generally recommended to include uv.lock in version control.
-#   This is especially recommended for binary packages to ensure reproducibility, and is more
-#   commonly ignored for libraries.
-#uv.lock
-
-# poetry
-#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
-#   This is especially recommended for binary packages to ensure reproducibility, and is more
-#   commonly ignored for libraries.
-#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
-#poetry.lock
-#poetry.toml
-
-# pdm
-#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
-#   pdm recommends including project-wide configuration in pdm.toml, but excluding .pdm-python.
-#   https://pdm-project.org/en/latest/usage/project/#working-with-version-control
-#pdm.lock
-#pdm.toml
-.pdm-python
-.pdm-build/
-
-# pixi
-#   Similar to Pipfile.lock, it is generally recommended to include pixi.lock in version control.
-#pixi.lock
-#   Pixi creates a virtual environment in the .pixi directory, just like venv module creates one
-#   in the .venv directory. It is recommended not to include this directory in version control.
-.pixi
-
-# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
-__pypackages__/
-
-# Celery stuff
-celerybeat-schedule
-celerybeat.pid
-
-# SageMath parsed files
-*.sage.py
-
-# Environments
-.env
-.envrc
-.venv
-env/
-venv/
-ENV/
-env.bak/
-venv.bak/
-
-# Spyder project settings
-.spyderproject
-.spyproject
-
-# Rope project settings
-.ropeproject
-
-# mkdocs documentation
-/site
-
-# mypy
-.mypy_cache/
-.dmypy.json
-dmypy.json
-
-# Pyre type checker
-.pyre/
-
-# pytype static type analyzer
-.pytype/
-
-# Cython debug symbols
-cython_debug/
-
-# PyCharm
-#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
-#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
-#  and can be added to the global gitignore or merged into this file.  For a more nuclear
-#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
-#.idea/
-
-# Abstra
-# Abstra is an AI-powered process automation framework.
-# Ignore directories containing user credentials, local state, and settings.
-# Learn more at https://abstra.io/docs
-.abstra/
-
-# Visual Studio Code
-#  Visual Studio Code specific template is maintained in a separate VisualStudioCode.gitignore 
-#  that can be found at https://github.com/github/gitignore/blob/main/Global/VisualStudioCode.gitignore
-#  and can be added to the global gitignore or merged into this file. However, if you prefer, 
-#  you could uncomment the following to ignore the entire vscode folder
-# .vscode/
-
-# Ruff stuff:
-.ruff_cache/
-
-# PyPI configuration file
-.pypirc
-
-# Cursor
-#  Cursor is an AI-powered code editor. `.cursorignore` specifies files/directories to
-#  exclude from AI features like autocomplete and code analysis. Recommended for sensitive data
-#  refer to https://docs.cursor.com/context/ignore-files
-.cursorignore
-.cursorindexingignore
-
-# Marimo
-marimo/_static/
-marimo/_lsp/
-__marimo__/
diff --git a/README.md b/README.md
index 7864626..dafb422 100644
--- a/README.md
+++ b/README.md
@@ -68,15 +68,16 @@ python array_aggregator.py input_parameters.yaml
 
 | File | Description |
 |------|-------------|
+| `POM_earthquakes_mseeds/` | Folder containing example dataset of earthquakes (.mseed) from the Aleutian Array of Arrays project. Dataset is from 2015-2016. See [Github Wiki](https://github.com/caquigley/array_aggregator/wiki/Example-Dataset) for more information. |
+| `figures/` | Folder containing example figures of expected output from provided input_parameters.yaml. |
+| `README.md` | The file you're reading now.  Contains background information on the repository as well as installation & usage info. |
 | `array_aggregator.py` | Main script for comparing USGS catalog eathquake locations to array processed locations. Includes some common plotting options. |
-| `input_parameters.yaml` | Input parameters for the array_aggregator script. Explanation of possible inputs are in the [Github Wiki](https://github.com/caquigley/array_aggregator/wiki/Input-parameters). |
-| `array_functions.py` | General functions used in the main script for array processing. |
-| `environment.yml` | Conda environment file for creating a local environment. |
 | `array_figures.py` | Aggregate of different plotting functions that can be called in the main array_aggregator.py script. |
+| `array_functions.py` | General functions used in the main script for array processing. |
 | `array_maps_pygmt.py` | Different map plotting options using pygmt library. |
-| `POM_earthquakes_mseeds` | Example dataset of earthquakes (.mseed) from the Aleutian Array of Arrays project. Dataset is from 2015-2016. See [Github Wiki](https://github.com/caquigley/array_aggregator/wiki/Example-Dataset) for more information. |
+| `environment.yml` | Conda environment file for creating a local environment. |
 | `green-purple.cpt` | Cpt file used in one of the plotting scripts for array derived slowness. |
-| `./figures` | Folder containing example figures of expected output from provided input_parameters.yaml. |
+| `input_parameters.yaml` | Input parameters for the array_aggregator script. Explanation of possible inputs are in the [Github Wiki](https://github.com/caquigley/array_aggregator/wiki/Input-parameters). |
 
 
 ## Example