Instead of: `bay <- readRDS(system.file("testdata", "bagel_annot.rds", package = "BAGEL"))` We should save a small dataset and/or bagel object which can be loaded: `data(bagel_annot)` This can be added in the data folder and should be documented.
Instead of:
bay <- readRDS(system.file("testdata", "bagel_annot.rds", package = "BAGEL"))We should save a small dataset and/or bagel object which can be loaded:
data(bagel_annot)This can be added in the data folder and should be documented.