forked from libqueso/queso
-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathMakefile.am
More file actions
181 lines (157 loc) · 8.04 KB
/
Makefile.am
File metadata and controls
181 lines (157 loc) · 8.04 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
AUTOMAKE_OPTIONS = foreign
ACLOCAL_AMFLAGS = -I m4 -I m4/common
EXTRA_DIST = $(DX_CONFIG) QUESO_users_manual.pdf CHANGES AUTHORS COPYING LICENSE
# Build in these directories:
SUBDIRS = inc/queso src/contrib/ANN src examples test/gsl_tests test doxygen
# Doxygen support
include $(top_srcdir)/doxygen/aminclude.am
# Tools in the auxillary directory
AUX_DIST = build-aux/install-sh \
build-aux/missing
pkgconfigdir = $(libdir)/pkgconfig
pkgconfig_DATA = queso.pc queso-deps.pc
if CODE_COVERAGE_ENABLED
lcov_dir=$(top_builddir)/docs/html/lcov
# General philosophy is to maintain code coverage for the
# base library as generated by "make check" tests.
#
# Temporarily disabling work in progress -> hdf5/env classes
lcov-report:
@mkdir -p $(lcov_dir)
$(top_srcdir)/src/common/lcov/lcov --compat-libtool --directory . --capture --output-file $(lcov_dir)/lcov.info
$(top_srcdir)/src/common/lcov/lcov --list-full-path -l $(lcov_dir)/lcov.info | grep -v "`cd -P $(top_srcdir)/src && pwd`" | cut -d\| -f1 > $(lcov_dir)/remove
$(top_srcdir)/src/common/lcov/lcov -q -r $(lcov_dir)/lcov.info `cat $(lcov_dir)/remove` > $(lcov_dir)/lcov.cleaned.info
@rm $(lcov_dir)/remove
@mv $(lcov_dir)/lcov.cleaned.info $(lcov_dir)/lcov.info
$(top_srcdir)/src/common/lcov/genhtml -t "QUESO" -o $(lcov_dir) $(lcov_dir)/lcov.info
lcov-reset:
@rm -rf $(lcov_dir)
@find . -name "*.gcda" -exec rm {} \;
$(top_srcdir)/src/common/lcov/lcov --directory . --zerocounters
coverage: docs lcov-reset check lcov-report
endif
# Files to be deleted by 'make maintainer-clean'
MAINTAINERCLEANFILES =
MAINTAINERCLEANFILES += aclocal.m4
MAINTAINERCLEANFILES += autom4te.cache/*
MAINTAINERCLEANFILES += $(AUX_DIST)
MAINTAINERCLEANFILES += config.log
MAINTAINERCLEANFILES += config.status
MAINTAINERCLEANFILES += config.sub
MAINTAINERCLEANFILES += configure
MAINTAINERCLEANFILES += config.h
MAINTAINERCLEANFILES += config.h.in
MAINTAINERCLEANFILES += config_queso.h
MAINTAINERCLEANFILES += config_queso.h.tmp.in
MAINTAINERCLEANFILES += config_queso.h.tmp.in~
MAINTAINERCLEANFILES += Makefile.in
MAINTAINERCLEANFILES += src/Makefile.in
MAINTAINERCLEANFILES += src/contrib/ANN/Makefile.in
MAINTAINERCLEANFILES += src/contrib/ANN/lib/Makefile.in
MAINTAINERCLEANFILES += src/contrib/ANN/test/Makefile.in
MAINTAINERCLEANFILES += src/core/Makefile.in
MAINTAINERCLEANFILES += src/core/src/Makefile.in
MAINTAINERCLEANFILES += src/core/inc/Makefile.in
MAINTAINERCLEANFILES += src/misc/Makefile.in
MAINTAINERCLEANFILES += src/misc/src/Makefile.in
MAINTAINERCLEANFILES += src/misc/inc/Makefile.in
MAINTAINERCLEANFILES += src/basic/Makefile.in
MAINTAINERCLEANFILES += src/basic/src/Makefile.in
MAINTAINERCLEANFILES += src/basic/inc/Makefile.in
MAINTAINERCLEANFILES += src/stats/Makefile.in
MAINTAINERCLEANFILES += src/stats/src/Makefile.in
MAINTAINERCLEANFILES += src/stats/inc/Makefile.in
MAINTAINERCLEANFILES += src/gp/Makefile.in
MAINTAINERCLEANFILES += src/gp/src/Makefile.in
MAINTAINERCLEANFILES += src/gp/inc/Makefile.in
MAINTAINERCLEANFILES += inc/queso/Makefile.in
MAINTAINERCLEANFILES += test/Makefile.in
MAINTAINERCLEANFILES += test/gsl_tests/Makefile.in
MAINTAINERCLEANFILES += test/t01_valid_cycle/Makefile.in
MAINTAINERCLEANFILES += test/t02_sip_sfp/Makefile.in
MAINTAINERCLEANFILES += test/t03_sequence/Makefile.in
MAINTAINERCLEANFILES += test/t04_bimodal/Makefile.in
MAINTAINERCLEANFILES += examples/Makefile.in
MAINTAINERCLEANFILES += examples/markovChain1/Makefile.in
MAINTAINERCLEANFILES += examples/markovChain1/src/Makefile.in
MAINTAINERCLEANFILES += examples/monteCarlo/Makefile.in
MAINTAINERCLEANFILES += examples/monteCarlo/src/Makefile.in
MAINTAINERCLEANFILES += examples/pyramid/Makefile.in
MAINTAINERCLEANFILES += examples/pyramid/src/Makefile.in
MAINTAINERCLEANFILES += examples/pyramid/src/physics_1/Makefile.in
MAINTAINERCLEANFILES += examples/pyramid/src/physics_1_2/Makefile.in
MAINTAINERCLEANFILES += examples/pyramid/src/physics_2/Makefile.in
MAINTAINERCLEANFILES += examples/tga/Makefile.in
MAINTAINERCLEANFILES += examples/tga/src/Makefile.in
MAINTAINERCLEANFILES += examples/simpleStatisticalInverseProblem/src/Makefile.in
MAINTAINERCLEANFILES += examples/simpleStatisticalForwardProblem/src/Makefile.in
MAINTAINERCLEANFILES += doxygen/Makefile.in
MOSTLYCLEANFILES = $(DX_CLEANFILES)
# Documentation hooks in with the 'html' target
###html-local: doxygen-run
###doc: doxygen-run
###docs: doxygen-run
# Additional files to be deleted by 'make distclean'
DISTCLEANFILES =
DISTCLEANFILES += _configs.sed
DISTCLEANFILES += test/t01_valid_cycle/outputData/file_cal_fp_qoi2.m
DISTCLEANFILES += test/t01_valid_cycle/outputData/file_cal_fp_qoi2_sub0.m
DISTCLEANFILES += test/t01_valid_cycle/outputData/file_val_ip_raw2_sub0.m
DISTCLEANFILES += test/t01_valid_cycle/outputData/file_cal_ip_raw2_sub0.m
DISTCLEANFILES += test/t01_valid_cycle/outputData/file_cal_ip_raw2.m
DISTCLEANFILES += test/t01_valid_cycle/outputData/file_val_fp_qoi2_sub0.m
DISTCLEANFILES += test/t01_valid_cycle/outputData/screen_sub0.txt
DISTCLEANFILES += test/t01_valid_cycle/outputData/file_val_fp_qoi2.m
DISTCLEANFILES += test/t01_valid_cycle/outputData/file_val_ip_raw2.m
DISTCLEANFILES += test/t01_valid_cycle/outputData/tgaValOutput_sub0.m
DISTCLEANFILES += test/t01_valid_cycle/outputData/tgaCalOutput_sub0.m
DISTCLEANFILES += test/t01_valid_cycle/outputData/file_cal_ip_raw2_loglikelihood.m
DISTCLEANFILES += test/t01_valid_cycle/outputData/file_cal_ip_raw2_loglikelihood_sub0.m
DISTCLEANFILES += test/t01_valid_cycle/outputData/file_cal_ip_raw2_logtarget.m
DISTCLEANFILES += test/t01_valid_cycle/outputData/file_cal_ip_raw2_logtarget_sub0.m
DISTCLEANFILES += test/t01_valid_cycle/outputData/file_val_ip_raw2_loglikelihood.m
DISTCLEANFILES += test/t01_valid_cycle/outputData/file_val_ip_raw2_loglikelihood_sub0.m
DISTCLEANFILES += test/t01_valid_cycle/outputData/file_val_ip_raw2_logtarget.m
DISTCLEANFILES += test/t01_valid_cycle/outputData/file_val_ip_raw2_logtarget_sub0.m
DISTCLEANFILES += test/t04_bimodal/outputData/display_sub0.txt
DISTCLEANFILES += test/t04_bimodal/outputData/sipOutput_ml_sub0.m
DISTCLEANFILES += test/t04_bimodal/outputData/filtChain_ml.m
DISTCLEANFILES += test/t04_bimodal/outputData/rawChain_ml.m
DISTCLEANFILES += test/gsl_tests/outputData/display_sub0.txt
DISTCLEANFILES += test/gslvector_out_sub0.m
DISTCLEANFILES += test/t02_sip_sfp/outputData/sfpOutput_sub0.m
DISTCLEANFILES += test/t02_sip_sfp/outputData/ip_raw_chain_sub0.m
DISTCLEANFILES += test/t02_sip_sfp/outputData/fp_p_seq.m
DISTCLEANFILES += test/t02_sip_sfp/outputData/display_sub0.txt
DISTCLEANFILES += test/t02_sip_sfp/outputData/nada1
DISTCLEANFILES += test/t02_sip_sfp/outputData/sipOutput_sub0.m
DISTCLEANFILES += test/t02_sip_sfp/outputData/nada0
DISTCLEANFILES += test/t02_sip_sfp/outputData/ip_raw_chain.m
DISTCLEANFILES += test/t02_sip_sfp/outputData/fp_q_seq.m
DISTCLEANFILES += test/t02_sip_sfp/outputData/ip_filt_chain_sub0.m
DISTCLEANFILES += test/t02_sip_sfp/outputData/fp_q_seq_sub0.m
DISTCLEANFILES += test/t02_sip_sfp/outputData/ip_filt_chain.m
DISTCLEANFILES += test/t02_sip_sfp/outputData/fp_p_seq_sub0.m
DISTCLEANFILES += test/t02_sip_sfp/outputData/ip_filt_chain_loglikelihood.m
DISTCLEANFILES += test/t02_sip_sfp/outputData/ip_filt_chain_loglikelihood_sub0.m
DISTCLEANFILES += test/t02_sip_sfp/outputData/ip_filt_chain_logtarget.m
DISTCLEANFILES += test/t02_sip_sfp/outputData/ip_filt_chain_logtarget_sub0.m
DISTCLEANFILES += test/t02_sip_sfp/outputData/ip_raw_chain_loglikelihood.m
DISTCLEANFILES += test/t02_sip_sfp/outputData/ip_raw_chain_loglikelihood_sub0.m
DISTCLEANFILES += test/t02_sip_sfp/outputData/ip_raw_chain_logtarget.m
DISTCLEANFILES += test/t02_sip_sfp/outputData/ip_raw_chain_logtarget_sub0.m
DISTCLEANFILES += test/outputData/*
DISTCLEANFILES += aminclude.am
DISTCLEANFILES += config_queso.h
CLEANFILES =
if GIT_CLONE
CLEANFILES += src/.license.stamp
CLEANFILES += test/.license.stamp
CLEANFILES += test/gsl_tests/.license.stamp
CLEANFILES += test/t01_valid_cycle/.license.stamp
CLEANFILES += test/t02_sip_sfp/.license.stamp
CLEANFILES += test/t03_sequence/.license.stamp
CLEANFILES += test/t04_bimodal/.license.stamp
endif
# Required for AX_AM_MACROS
#@INC_AMINCLUDE@