NeuroLibre reproducible preprints

[agahkarakuzu]

Title

NeuroLibre reproducible preprints

Leaders

Agah Karakuzu, Pierre Bellec

Collaborators

Hao-Ting Wang

Brainhack Global 2023 Event

Brainhack Montreal

Project Description

• To bring preprints to life by creating a publishing workflow that can seamlessly integrate narrative and executable content.
• Our findings are too cool to be trapped in PDFs. This project is exciting because it demonstrates that a publication's prestige can arise from its inherent ability to provide insights, not solely from the journal's title.
• You may take a look at https://neurolibre.org, https://docs.neurolibre.org to start with.

Link to project repository/sources

https://github.com/neurolibre

Goals for Brainhack Global

• To improve Repo2Data component, which is responsible for downloading and caching the data on NeuroLibre servers.
• To refactor the codebase of https://github.com/neurolibre/full-stack-server, which is currently has a monolithic design

Good first issues

1. issue one: Make repo2data aware of existing projects, do not overwrite data in case a new submission name coincides with an existing one. This information should be accessible by the submission portal.

2. issue two: Clean up and refactor the full stack server Python code.

Communication channels

Github issues on the respective projects:

• https://github.com/neurolibre/full-stack-server
• https://github.com/SIMEXP/Repo2Data

Skills

• Python: Basic to intermediate
• Non coding skills: To improve documentation

Onboarding documentation

No response

What will participants learn?

This project give participants an opportunity to work on components that interface with several web applications to establish a reproducible publication workflow.

Data to use

No response

Number of collaborators

3

Credit to collaborators

We would like to highlight community contributors on https://neurolibre.org/about

Image

Type

other

Development status

2_releases_existing

Topic

reproducible_scientific_methods

Tools

other

Programming language

containerization, documentation, Python, R, unix_command_line, html_css, other

Modalities

not_applicable

Git skills

2_branches_PRs

Anything else?

No response

Things to do after the project is submitted and ready to review.

• Add a comment below the main post of your issue saying: Hi @brainhackorg/project-monitors my project is ready!
• Twitter-sized summary of your project pitch.