bolduc.github.io/index.xml at master · bolduc/bolduc.github.io · GitHub

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    <title>Academic on Academic</title>
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    <description>Recent content in Academic on Academic</description>
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      <title>vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria</title>
      <link>https://bolduc.github.io/publication/vcontact/</link>
      <pubDate>Sat, 27 May 2017 19:24:46 -0400</pubDate>

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      <title>iVirus</title>
      <link>https://bolduc.github.io/project/ivirus/</link>
      <pubDate>Thu, 27 Apr 2017 00:00:00 +0000</pubDate>

      <guid>https://bolduc.github.io/project/ivirus/</guid>
      <description>&lt;p&gt;The iVirus project is a collaboration between the &lt;a href=&#34;http://www.hurwitzlab.org/&#34; target=&#34;_blank&#34;&gt;Hurwitz&lt;/a&gt; lab, of the University of Arizona, and the &lt;a href=&#34;https://u.osu.edu/viruslab/&#34; target=&#34;_blank&#34;&gt;Sullivan&lt;/a&gt; lab, of the Ohio State University. It arose from noticing the painfully obvious need to make viral ecology tools open and available to the viral ecology community. With the recent (well, for the past decade or so) rise in next-generation sequencing, the field of viral ecology has dramatically expanded our knowledge of the &amp;ldquo;virosphere&amp;rdquo;, led in no small part by the dramatically lower cost to sequence environmental viruses. With the dramatic influx of huge amounts of sequencing data, it&amp;rsquo;s becoming an ever-increasing challenge to process these datasets. Luckily, iVirus leverages the &lt;a href=&#34;http://www.cyverse.org/&#34; target=&#34;_blank&#34;&gt;CyVerse&lt;/a&gt; cyberinfrastructure, an NSF-funded project that seeks to address the challenges of large-scale data analysis. It comes with data storage (both public and private), a GUI interface, and 1000s of &amp;ldquo;apps&amp;rdquo; (read: tools) that researchers can use to process their data. It&amp;rsquo;s &lt;em&gt;entirely possible&lt;/em&gt; to go from raw sequencing data from a sequencing center to fully analyzed viral metagenomes.&lt;/p&gt;

&lt;figure&gt;
  &lt;img style=&#34;float: right;&#34; src=&#34;https://bolduc.github.io/img/iVirus-Figure1_v3.png&#34;&gt;
  &lt;figcaption&gt;&lt;a href=&#34;http://www.nature.com/ismej/journal/v11/n1/full/ismej201689a.html&#34; target=&#34;_blank&#34;&gt;Bolduc et al, 2017&lt;/a&gt;&lt;/figcaption&gt;
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&lt;p&gt;You can read more about the project at its home, the &lt;a href=&#34;http://ivirus.us/&#34; target=&#34;_blank&#34;&gt;iVirus project&lt;/a&gt;.&lt;/p&gt;
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      <title>vConTACT</title>
      <link>https://bolduc.github.io/project/vcontact/</link>
      <pubDate>Thu, 27 Apr 2017 00:00:00 +0000</pubDate>

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      <title>The Prevalence of STIV c92-Like Protein in Acidic Thermal Environments</title>
      <link>https://bolduc.github.io/publication/stiv_c92_proteins/</link>
      <pubDate>Sat, 16 Jul 2016 00:00:00 +0000</pubDate>

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      <title>iVirus: facilitating new insights in viral ecology with software and community data sets imbedded in a cyberinfrastructure</title>
      <link>https://bolduc.github.io/publication/ivirus/</link>
      <pubDate>Sat, 16 Jul 2016 00:00:00 +0000</pubDate>

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      <title>Viral assemblage composition in Yellowstone acidic hot springs assessed by network analysis</title>
      <link>https://bolduc.github.io/publication/ynp_networks/</link>
      <pubDate>Tue, 30 Jun 2015 00:00:00 +0000</pubDate>

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      <title>Archaeal Viruses: Diversity, Replication, and Structure</title>
      <link>https://bolduc.github.io/publication/archaeal_virus_review/</link>
      <pubDate>Wed, 02 Jul 2014 00:00:00 +0000</pubDate>

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      <title>Identification of Positive-Strand RNA Viruses by Metagenomic Analysis of Archaea-Dominated Yellowstone Hot Springs</title>
      <link>https://bolduc.github.io/publication/archaeal_rna_viruses/</link>
      <pubDate>Wed, 29 Feb 2012 00:00:00 +0000</pubDate>

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      <title>A target-unrelated peptide in an M13 phage display library traced to an advantageous mutation in the gene II ribosome-binding site</title>
      <link>https://bolduc.github.io/publication/tup_m13/</link>
      <pubDate>Fri, 01 Feb 2008 00:00:00 +0000</pubDate>

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