chore(deps): update dependencies for improved stability and features

- Update @types/node from ^25.5.0 to ^25.5.2
- Update express-rate-limit from ^8.3.1 to ^8.3.2
- Update @typescript-eslint/eslint-plugin and parser from ^8.57.2 to ^8.58.0
- Update eslint from ^10.1.0 to ^10.2.0
- Update @modelcontextprotocol/sdk from ^1.28.0 to ^1.29.0
- Update ts-jest from ^29.1.1 to ^29.4.9

Author: bocan