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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -33,12 +33,12 @@ optional arguments:
3333 -h, --help show this help message and exit
3434
3535Mandatory arguments:
36- -f1, --fasta1 Fasta file for specie1 (Genomic sequence)
37- -g1, --gff1 GFF/GFF3 file for specie1
38- -f2, --fasta2 Fasta file for specie2 (Genomic sequence)
39- -g2, --gff2 GFF/GFF3 file for specie2
40- -t, --blastp_threads Number of threads (CPUs) to use in the BLAST search
41- -p, --prefix Job prefix, it will be used for MCScanX results
36+ -f1 --fasta1 Fasta file for specie1 (Genomic sequence)
37+ -g1 --gff1 GFF/GFF3 file for specie1
38+ -f2 --fasta2 Fasta file for specie2 (Genomic sequence)
39+ -g2 --gff2 GFF/GFF3 file for specie2
40+ -t --blastp_threads Number of threads (CPUs) to use in the BLAST search
41+ -p --prefix Job prefix, it will be used for MCScanX results
4242```
4343
4444## The pipeline:
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