From 75c37eedb41bd6f6ce9954ef8a565ad37c1f0233 Mon Sep 17 00:00:00 2001
From: Chengxin Dai <37200167+daichengxin@users.noreply.github.com>
Date: Thu, 18 Jun 2026 16:35:23 +0800
Subject: [PATCH] Update main.nf

---
 modules/bigbio/onsite/main.nf | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/modules/bigbio/onsite/main.nf b/modules/bigbio/onsite/main.nf
index 9fb4e65..0b0f55c 100644
--- a/modules/bigbio/onsite/main.nf
+++ b/modules/bigbio/onsite/main.nf
@@ -72,8 +72,8 @@ process ONSITE {
         fragment_unit = params.onsite_fragment_error_units ?: 'Da'
         def fragment_method = params.onsite_fragment_method ?: 'CID'
         def min_mz = params.onsite_min_mz ?: '150.0'
-        def max_charge = params.onsite_max_charge_state ?: '5'
-        def max_peptide_len = params.onsite_max_peptide_length ?: '40'
+        def max_charge = params.max_precursor_charge ?: '5'
+        def max_peptide_len = params.max_peptide_length ?: '40'
         def max_num_perm = params.onsite_max_num_perm ?: '16384'
         def modeling_threshold = params.onsite_modeling_score_threshold ?: '0.95'
         def scoring_threshold = params.onsite_scoring_threshold ?: '0.0'