From a650795871ca425cf0b35e64300c6f6f3e88e46c Mon Sep 17 00:00:00 2001
From: Chengxin Dai <37200167+daichengxin@users.noreply.github.com>
Date: Wed, 17 Jun 2026 17:09:28 +0800
Subject: [PATCH 1/2] Update main.nf

---
 modules/bigbio/onsite/main.nf | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/modules/bigbio/onsite/main.nf b/modules/bigbio/onsite/main.nf
index f5b06b6..9fb4e65 100644
--- a/modules/bigbio/onsite/main.nf
+++ b/modules/bigbio/onsite/main.nf
@@ -4,8 +4,8 @@ process ONSITE {
     label 'onsite'
 
     container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container
-        ? 'oras://ghcr.io/bigbio/pyonsite-sif:0.0.3'
-        : 'ghcr.io/bigbio/pyonsite:0.0.3'}"
+        ? 'oras://ghcr.io/bigbio/pyonsite-sif:0.0.4'
+        : 'ghcr.io/bigbio/pyonsite:0.0.4'}"
 
     input:
     tuple val(meta), path(mzml_file), path(id_file)

From 99104d2612d3c926b0d3173f3d2eb50411510d3d Mon Sep 17 00:00:00 2001
From: Chengxin Dai <37200167+daichengxin@users.noreply.github.com>
Date: Wed, 17 Jun 2026 17:33:52 +0800
Subject: [PATCH 2/2] Update environment.yml

---
 modules/bigbio/onsite/environment.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/modules/bigbio/onsite/environment.yml b/modules/bigbio/onsite/environment.yml
index 59f3a41..d1890de 100644
--- a/modules/bigbio/onsite/environment.yml
+++ b/modules/bigbio/onsite/environment.yml
@@ -3,4 +3,4 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - bioconda::pyonsite=0.0.3
+  - bioconda::pyonsite=0.0.4