This workflows uses matUtils summarize to get pretty much all data you'd ever need from an UShER-formatted protobuff (.pb) phylogenetic tree.
Outputs include:
- Basic summary
- Aberrant (-A)
- Clades (-A) and sample clades (-C)
- Haplotypes (-H)
- Mutations (-A)
- Samples (-A)
- Roho score (-R)