Failing to reproduce example

[josruirod]

Hello. I believe ChromDiff is still recommended for finding out regions with differential chromatin state and linking it with different expression.
I'd like to give it a try, but I have not been able to reproduce the example

After downloading the bed.gz files to statecalls/core and running notes_v2.sh I'm getting the following error when processing each feature:
awk: calc_perc.awk: line 138: illegal reference to array genename

And at the end: "awk: cannot open backgrounds/core_gencode_v10/perc_background.txt (No such file or directory)".
No files or results are created

I'm going to try to figure it out, but I would appreciate any thougths.
Thanks

[rtmag]

Hello, I ran into the same issue! did you ever find a fix? thanks in advance!

[rtmag]

I solved this issue by installing another newer version of gawk with:
sudo apt-get install gawk

However, a different error, popd up. I'll raise a new issue...