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src/docs/usage.rst
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Usage
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*****
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+.. code-block:: bash
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+
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+ alignoth
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+To activate the interactive mode guiding you through the process of creating an alignment plot.
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.. code-block:: bash
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alignoth -b path/to/my.bam -r path/to/my/reference.fa -g chr1:200-300 > plot.vl.json
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