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Merge branch 'main' into fix/legacy-mpp-multiple-dcm-files
2 parents 55c4343 + 3f588bc commit 7fa9997

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lines changed

‎.github/dependabot.yml‎

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- "dependabot"
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- "dependencies"
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- "skip:test:long_running"
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- "skip:codecov"
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schedule:
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interval: "cron"
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cronjob: "0 1 * * 1-5"

‎.github/labels.yml‎

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description: Skip unit tests
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color: "614318"
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- name: skip:codecov
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description: Skip Codecov reporting and check
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color: "8b4512"
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- name: skip:ketryx
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description: Skip Ketryx ALM reporting and checks
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color: "8b4513"

‎.github/workflows/_scheduled-test-stress.yml‎

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name: "> Stress Test (5 minutely)"
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on:
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workflow_call:
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inputs:
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platform_environment:
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description: 'Environment to test against, that is staging or production'
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required: false
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default: 'staging'
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type: string
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branch:
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description: 'Branch to checkout (leave empty for default branch)'
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required: false
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default: ''
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type: string
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secrets:
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AIGNOSTICS_CLIENT_ID_DEVICE_STAGING:
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required: true
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AIGNOSTICS_REFRESH_TOKEN_STAGING:
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required: true
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GCP_CREDENTIALS_STAGING:
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required: true
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AIGNOSTICS_CLIENT_ID_DEVICE_PRODUCTION:
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required: true
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AIGNOSTICS_REFRESH_TOKEN_PRODUCTION:
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required: true
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GCP_CREDENTIALS_PRODUCTION:
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required: true
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SENTRY_DSN:
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required: true
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env:
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# https://gist.github.com/NodeJSmith/e7e37f2d3f162456869f015f842bcf15
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PYTHONIOENCODING: "utf8"
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AIGNOSTICS_PLATFORM_ENVIRONMENT: ${{ inputs.platform_environment }}
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jobs:
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test-scheduled-hourly:
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runs-on: ubuntu-latest
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permissions:
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contents: read
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id-token: write
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steps:
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- name: Checkout
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uses: actions/checkout@08c6903cd8c0fde910a37f88322edcfb5dd907a8 # v5.0.0
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with:
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ref: ${{ inputs.branch || github.ref }}
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fetch-depth: 0
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- name: Install uv
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uses: astral-sh/setup-uv@2ddd2b9cb38ad8efd50337e8ab201519a34c9f24 # v7.1.1
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with:
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version-file: "pyproject.toml"
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enable-cache: true
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cache-dependency-glob: uv.lock
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- name: Install dev tools
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shell: bash
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run: .github/workflows/_install_dev_tools.bash
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- name: Install Python, venv and dependencies
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shell: bash
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run: uv sync --all-extras --frozen --link-mode=copy
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- name: Create .env file
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uses: SpicyPizza/create-envfile@ace6d4f5d7802b600276c23ca417e669f1a06f6f # v2.0.3
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with:
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# The following 3 lines are correct even if vscode complains
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envkey_AIGNOSTICS_API_ROOT: ${{ inputs.platform_environment == 'staging' && 'https://platform-staging.aignostics.com' || 'https://platform.aignostics.com' }}
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envkey_AIGNOSTICS_CLIENT_ID_DEVICE: ${{ inputs.platform_environment == 'staging' && secrets.AIGNOSTICS_CLIENT_ID_DEVICE_STAGING || secrets.AIGNOSTICS_CLIENT_ID_DEVICE_PRODUCTION }}
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envkey_AIGNOSTICS_REFRESH_TOKEN: ${{ inputs.platform_environment == 'staging' && secrets.AIGNOSTICS_REFRESH_TOKEN_STAGING || secrets.AIGNOSTICS_REFRESH_TOKEN_PRODUCTION }}
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envkey_AIGNOSTICS_SENTRY_ENABLED: true
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envkey_AIGNOSTICS_SENTRY_DSN: ${{ secrets.SENTRY_DSN}}
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envkey_AIGNOSTICS_SENTRY_DEBUG: false
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envkey_AIGNOSTICS_SENTRY_SEND_DEFAULT_PII: false
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envkey_AIGNOSTICS_SENTRY_SAMPLE_RATE: 0
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envkey_AIGNOSTICS_SENTRY_TRACES_SAMPLE_RATE: 0
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envkey_AIGNOSTICS_SENTRY_PROFILES_SAMPLE_RATE: 0
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fail_on_empty: false
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- name: Set up GCP credentials for bucket access
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shell: bash
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env:
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GCP_CREDENTIALS: ${{ inputs.platform_environment == 'staging' && secrets.GCP_CREDENTIALS_STAGING || secrets.GCP_CREDENTIALS_PRODUCTION }}
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run: |
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echo "$GCP_CREDENTIALS" | base64 -d > credentials.json
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echo "GOOGLE_APPLICATION_CREDENTIALS=$(pwd)/credentials.json" >> $GITHUB_ENV
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- name: Test / stress
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shell: bash
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run: |
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set +e
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make test_stress

‎.github/workflows/_test.yml‎

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- name: Upload coverage reports to Codecov
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uses: codecov/codecov-action@5a1091511ad55cbe89839c7260b706298ca349f7 # v5.5.1
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if: ${{ !cancelled() && (env.GITHUB_WORKFLOW_RUNTIME != 'ACT') && matrix.runner == 'ubuntu-latest' }}
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if: |
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!cancelled() &&
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(env.GITHUB_WORKFLOW_RUNTIME != 'ACT') &&
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matrix.runner == 'ubuntu-latest' &&
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!contains(inputs.commit_message, 'skip:ketryx') &&
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!contains(github.event.pull_request.labels.*.name, 'skip:ketryx')
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with:
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token: ${{ secrets.CODECOV_TOKEN }}
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slug: aignostics/python-sdk
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- name: Upload test results to Codecov
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if: ${{ !cancelled() && (env.GITHUB_WORKFLOW_RUNTIME != 'ACT') && matrix.runner == 'ubuntu-latest' }}
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if: |
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!cancelled() &&
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(env.GITHUB_WORKFLOW_RUNTIME != 'ACT') &&
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matrix.runner == 'ubuntu-latest' &&
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!contains(inputs.commit_message, 'skip:ketryx') &&
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!contains(github.event.pull_request.labels.*.name, 'skip:ketryx')
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uses: codecov/test-results-action@47f89e9acb64b76debcd5ea40642d25a4adced9f # v1.1.1
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with:
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token: ${{ secrets.CODECOV_TOKEN }}

‎.github/workflows/stress-testing-staging.yml‎

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name: "+ Stress Testing / Staging (5 minutely)"
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on:
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schedule:
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- cron: '*/5 * * * *'
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workflow_dispatch:
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inputs:
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branch:
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description: 'Branch to test (leave empty for main)'
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required: false
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type: string
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default: ''
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jobs:
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scheduled-testing-staging-5-minutely:
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uses: ./.github/workflows/_scheduled-test-stress.yml
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with:
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platform_environment: "staging"
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permissions:
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contents: read
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id-token: write
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secrets:
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AIGNOSTICS_CLIENT_ID_DEVICE_STAGING: ${{ secrets.AIGNOSTICS_CLIENT_ID_DEVICE_STAGING }}
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AIGNOSTICS_REFRESH_TOKEN_STAGING: ${{ secrets.AIGNOSTICS_REFRESH_TOKEN_STAGING }}
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GCP_CREDENTIALS_STAGING: ${{ secrets.GCP_CREDENTIALS_STAGING }}
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AIGNOSTICS_CLIENT_ID_DEVICE_PRODUCTION: ${{ secrets.AIGNOSTICS_CLIENT_ID_DEVICE_PRODUCTION }}
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AIGNOSTICS_REFRESH_TOKEN_PRODUCTION: ${{ secrets.AIGNOSTICS_REFRESH_TOKEN_PRODUCTION }}
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GCP_CREDENTIALS_PRODUCTION: ${{ secrets.GCP_CREDENTIALS_PRODUCTION }}
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SENTRY_DSN: ${{ secrets.SENTRY_DSN }} # For metrics and heartbeat

‎CHANGELOG.md‎

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[🔬 Aignostics Python SDK](https://aignostics.readthedocs.io/en/latest/)
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# [0.2.204](https://github.com/aignostics/python-sdk/compare/v0.2.203..0.2.204) - 2025-11-20
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# [0.2.209](https://github.com/aignostics/python-sdk/compare/v0.2.208..0.2.209) - 2025-11-21
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### ⛰️ Features
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- *(application)* Allow to list and describe application and runs with the output being json - ([c995ebe](https://github.com/aignostics/python-sdk/commit/c995ebe616a6f8c28a7f709404d5ed6469c5aaff))
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- *(application)* Allow to cancel runs matching a filter with criteria including application id, application version and tags. includes --dry-run option - ([c995ebe](https://github.com/aignostics/python-sdk/commit/c995ebe616a6f8c28a7f709404d5ed6469c5aaff))
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- Feat/logging-redirect - ([15de455](https://github.com/aignostics/python-sdk/commit/15de4552b72008308d16f6184527ff9e9fcc0e3e))
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### 🧪 Testing
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- *(platform)* More tags for test_platform_special_app_submit - ([8c8beac](https://github.com/aignostics/python-sdk/commit/8c8beac0ea18f11b9c7f64312f683fd9f2e98796))
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- *(platform)* Staging: L4, on-demand every 5 min - ([17a9edc](https://github.com/aignostics/python-sdk/commit/17a9edc710ef3ae429e172665e7dc55ccbb6f3a0))
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- *(stress)* Support stress_only tests that only run on make test_stress and 5-minutely stress test schedule - ([8a16b36](https://github.com/aignostics/python-sdk/commit/8a16b36d237fcc5b64f3efc7440f063fb0c91703))
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- *(stress)* Target 0.0.0-test.retry.bug.20.11 - ([2dc98bc](https://github.com/aignostics/python-sdk/commit/2dc98bc78980f1241604f1faccc4b705fd89e8cb))
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- *(stress)* 5 minute stress tests - ([6a2a0e1](https://github.com/aignostics/python-sdk/commit/6a2a0e14dc123dce8af192a32e11250608763701))
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### ⚙️ Miscellaneous Tasks
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- *(docs)* Fix Utils Module Specification - ([a1ebc4a](https://github.com/aignostics/python-sdk/commit/a1ebc4aac221969f404687520a9286bfcac38fb1))
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- *(docs)* Fix SPEC_WSI_SERVICE.md - ([07b991a](https://github.com/aignostics/python-sdk/commit/07b991a3ede2596ed043499a1ad7db1349cf4073))
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- *(stress)* Workflow - ([ce39147](https://github.com/aignostics/python-sdk/commit/ce391478dcb38ce2b75b572d135948e6a2499912))
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# [v0.2.208](https://github.com/aignostics/python-sdk/compare/v0.2.207..v0.2.208) - 2025-11-21
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### ⛰️ Features
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- *(application)* Show duration in run sidebar - ([ed583fd](https://github.com/aignostics/python-sdk/commit/ed583fd5a15e404ba5d3cf8296d0bde8280d90e6))
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# [v0.2.207](https://github.com/aignostics/python-sdk/compare/v0.2.206..v0.2.207) - 2025-11-20
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### 🧪 Testing
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- *(application)* Auto-cancel custom pipeline tests - ([987d025](https://github.com/aignostics/python-sdk/commit/987d025a839f74429fbe3a2cd2aa6234df4d9ff8))
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- *(system)* Mark test as sequential - ([0b90d06](https://github.com/aignostics/python-sdk/commit/0b90d066fae002b217eeb79af525b49d224b741d))
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# [v0.2.206](https://github.com/aignostics/python-sdk/compare/v0.2.205..v0.2.206) - 2025-11-20
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### 🐛 Bug Fixes
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- *(application)* Pipeline settings in GUI and CLI ([#271](https://github.com/orhun/git-cliff/issues/271)) - ([feaa047](https://github.com/aignostics/python-sdk/commit/feaa047d2608a302e162260606045b8c026e20fe))
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### 🚜 Refactor
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- *(application)* Reduce max items in sidebar from 500 to 200 - ([e8f07a9](https://github.com/aignostics/python-sdk/commit/e8f07a9659a009cf814930aafd4b32671354d680))
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### 🧪 Testing
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- *(application)* Proper integration tests for pipeline settings in GUI and CLI - ([feaa047](https://github.com/aignostics/python-sdk/commit/feaa047d2608a302e162260606045b8c026e20fe))
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- *(platform,staging)* Switch to A100, ON_DEMAND, 1 (was L4, SPOT, 1) - ([4b8be3d](https://github.com/aignostics/python-sdk/commit/4b8be3d17527a8de71342a1fb693e73ce2aa7197))
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# [v0.2.205](https://github.com/aignostics/python-sdk/compare/v0.2.204..v0.2.205) - 2025-11-20
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### ⛰️ Features
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- *(application)* GUI and CLI now use L4, SPOT, max=gpu=1 as defaults - ([37873c7](https://github.com/aignostics/python-sdk/commit/37873c72f39688300b63b06188f14e3a53daaf76))
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# [v0.2.204](https://github.com/aignostics/python-sdk/compare/v0.2.203..v0.2.204) - 2025-11-20
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### 🧪 Testing
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‎Makefile‎

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endif
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# Define all PHONY targets
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.PHONY: act all audit bump clean codegen dist dist_native docs docker_build gui_watch install lint pre_commit_run_all profile setup test test_coverage_reset test_default test_e2e test_e2e_matrix test_integration test_integration_matrix test_long_running test_scheduled test_sequential test_unit test_unit_matrix test_very_long_running update_from_template
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.PHONY: act all audit bump clean codegen dist dist_native docs docker_build gui_watch install lint pre_commit_run_all profile setup test test_coverage_reset test_default test_e2e test_e2e_matrix test_integration test_integration_matrix test_long_running test_scheduled test_stress test_sequential test_unit test_unit_matrix test_very_long_running update_from_template
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# Main target i.e. default sessions defined in noxfile.py
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## Run unit tests (non-sociable tests)
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test_unit:
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XDIST_WORKER_FACTOR=0.0 uv run --all-extras nox -s test -p $(PYTHON_VERSION) -- -m "unit and not long_running and not very_long_running" --cov-append
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XDIST_WORKER_FACTOR=0.0 uv run --all-extras nox -s test -p $(PYTHON_VERSION) -- -m "unit and not long_running and not very_long_running and not stress_only" --cov-append
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test_unit_matrix:
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XDIST_WORKER_FACTOR=0.5 uv run --all-extras nox -s test -- -m "unit and not long_running and not very_long_running" --cov-append
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XDIST_WORKER_FACTOR=0.5 uv run --all-extras nox -s test -- -m "unit and not long_running and not very_long_running and not stress_only" --cov-append
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## Run integration tests (test real layer/module interactions with mocked external services)
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test_integration:
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XDIST_WORKER_FACTOR=0.2 uv run --all-extras nox -s test -p $(PYTHON_VERSION) -- -m "integration and not long_running and not very_long_running" --cov-append
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XDIST_WORKER_FACTOR=0.2 uv run --all-extras nox -s test -p $(PYTHON_VERSION) -- -m "integration and not long_running and not very_long_running and not stress_only" --cov-append
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test_integration_matrix:
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XDIST_WORKER_FACTOR=0.5 uv run --all-extras nox -s test -- -m "integration and not long_running and not very_long_running" --cov-append
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XDIST_WORKER_FACTOR=0.5 uv run --all-extras nox -s test -- -m "integration and not long_running and not very_long_running and not stress_only" --cov-append
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## Run e2e tests (test complete workflows with real external services)
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test_e2e:
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XDIST_WORKER_FACTOR=1 uv run --all-extras nox -s test -p $(PYTHON_VERSION) -- -m "e2e and not long_running and not very_long_running" --cov-append
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XDIST_WORKER_FACTOR=1 uv run --all-extras nox -s test -p $(PYTHON_VERSION) -- -m "e2e and not long_running and not very_long_running and not stress_only" --cov-append
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test_e2e_matrix:
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XDIST_WORKER_FACTOR=1 uv run --all-extras nox -s test -- -m "e2e and not long_running and not very_long_running" --cov-append
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XDIST_WORKER_FACTOR=1 uv run --all-extras nox -s test -- -m "e2e and not long_running and not very_long_running and not stress_only" --cov-append
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## Run tests marked as long_running
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test_long_running:
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XDIST_WORKER_FACTOR=2 uv run --all-extras nox -s test -p $(PYTHON_VERSION) -- -m long_running --cov-append
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XDIST_WORKER_FACTOR=2 uv run --all-extras nox -s test -p $(PYTHON_VERSION) -- -m "long_running and not stress_only" --cov-append
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## Run tests marked as very_long_running
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test_very_long_running:
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XDIST_WORKER_FACTOR=2 uv run --all-extras nox -s test -p $(PYTHON_VERSION) -- -m very_long_running --cov-append
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XDIST_WORKER_FACTOR=2 uv run --all-extras nox -s test -p $(PYTHON_VERSION) -- -m "very_long_running and not stress_only" --cov-append
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## Run tests marked as scheduled or scheduled_only
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test_scheduled:
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XDIST_WORKER_FACTOR=1 uv run --all-extras nox -s test -p $(PYTHON_VERSION) -- -m "(scheduled or scheduled_only)"
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XDIST_WORKER_FACTOR=1 uv run --all-extras nox -s test -p $(PYTHON_VERSION) -- -m "(scheduled or scheduled_only) and not stress_only"
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## Run tests marked as sequential
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test_sequential:
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uv run --all-extras nox -s test -p $(PYTHON_VERSION) -- -m sequential
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uv run --all-extras nox -s test -p $(PYTHON_VERSION) -- -m "sequential and not stress_only"
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## Run stress tests marked as such
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test_stress:
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XDIST_WORKER_FACTOR=1 uv run --all-extras nox -s test -p $(PYTHON_VERSION) -- -m "(stress or stress_only)"
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## Reset test coverage data
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test_coverage_reset:

‎VERSION‎

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0.2.204
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0.2.209

‎aignostics.spec‎

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name='aignostics.app',
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icon='logo.ico',
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bundle_identifier='com.aignostics.launchpad',
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version='0.2.204',
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version='0.2.209',
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info_plist={
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'NSPrincipalClass': 'NSApplication',
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'NSAppleScriptEnabled': False,

‎docs/source/conf.py‎

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project = "aignostics"
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author = "Helmut Hoffer von Ankershoffen"
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copyright = f" (c) 2025-{datetime.now(UTC).year} Aignostics GmbH, Author: {author}" # noqa: A001
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version = "0.2.204"
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version = "0.2.209"
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release = version
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github_username = "aignostics"
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github_repository = "python-sdk"

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