straf/NAMESPACE at master · agouy/straf · GitHub

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# Generated by roxygen2: do not edit by hand

export(about_tab)
export(createGenind)
export(data_Server)
export(data_UI)
export(documentation_tab)
export(file_conv_Server)
export(file_conv_UI)
export(for_UI)
export(for_popgen_Server)
export(freq_to_mds)
export(getFreqAllPop)
export(getFreqFromGenind)
export(getGenepopHW)
export(getGenepopLD)
export(getHaploStatsAllPop)
export(getHaploStatsFromGenind)
export(getIndicesAllPop)
export(getIndicesFromGenind)
export(get_2p2q2)
export(get_hw_gp)
export(get_ld_gp)
export(pca_mds_Server)
export(pca_mds_UI)
export(plot_hap_dist)
export(plot_hap_div)
export(plot_ld)
export(popgen_UI)
export(poptree2straf)
export(ref_mds_Server)
export(ref_mds_UI)
export(runStraf)
export(sidebarUI)
export(straf2arlequin)
export(straf2familias)
export(straf2genepop)
import(shiny, except = c(dataTableOutput, renderDataTable))
importClassesFrom(adegenet,genind)
importFrom(DT,dataTableOutput)
importFrom(DT,datatable)
importFrom(DT,renderDataTable)
importFrom(MASS,isoMDS)
importFrom(adegenet,"pop<-")
importFrom(adegenet,as.genind)
importFrom(adegenet,df2genind)
importFrom(adegenet,dist.genpop)
importFrom(adegenet,genind2genpop)
importFrom(adegenet,locNames)
importFrom(adegenet,makefreq)
importFrom(adegenet,pop)
importFrom(adegenet,transp)
importFrom(ape,as.phylo)
importFrom(colourpicker,colourInput)
importFrom(genepop,clean_workdir)
importFrom(genepop,test_HW)
importFrom(genepop,test_LD)
importFrom(ggplot2,aes)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,theme_minimal)
importFrom(ggrepel,geom_text_repel)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,hist)
importFrom(graphics,image)
importFrom(graphics,legend)
importFrom(graphics,par)
importFrom(hierfstat,genind2hierfstat)
importFrom(hierfstat,pairwise.WCfst)
importFrom(hierfstat,wc)
importFrom(magrittr,"%>%")
importFrom(openxlsx,write.xlsx)
importFrom(pegas,genind2loci)
importFrom(plotly,ggplotly)
importFrom(plotly,plotlyOutput)
importFrom(plotly,renderPlotly)
importFrom(readxl,read_excel)
importFrom(reshape2,acast)
importFrom(shinyWidgets,awesomeCheckbox)
importFrom(shinyWidgets,pickerInput)
importFrom(shinycssloaders,withSpinner)
importFrom(stats,as.dist)
importFrom(stats,cmdscale)
importFrom(stats,cov)
importFrom(stats,frequency)
importFrom(stats,hclust)
importFrom(stats,ks.test)
importFrom(stats,median)
importFrom(stats,p.adjust)
importFrom(stats,prcomp)
importFrom(stats,qqplot)
importFrom(stats,qunif)
importFrom(tidyr,gather)
importFrom(utils,count.fields)
importFrom(utils,read.table)
importFrom(utils,write.table)