CHAMPAGNE/mkdocs.yml at main · abcsFrederick/CHAMPAGNE · GitHub

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# Project Information
site_name: CHAMPAGNE
site_author: CCR Collaborative Bioinformatics Resource
site_description: >-
  ChIP-seq pipeline
# Repository
repo_name: CCBR/CHAMPAGNE
repo_url: https://github.com/CCBR/CHAMPAGNE
edit_uri: https://github.com/CCBR/CHAMPAGNE/edit/main/

# Copyright
copyright: Copyright &copy; 2023-{{ now().year }} CCR Collaborative Bioinformatics Resource

# Configuration
theme:
  name: readthedocs
  locale: en
  custom_dir: docs/overrides
  highlightjs: true
  hljs_languages:
    - yaml

# Plugins
plugins:
  - search
  - git-revision-date
  - minify:
      minify_html: true

# Customization
extra:
  social:
    - icon: fontawesome/solid/users
      link: http://bioinformatics.cancer.gov
    - icon: fontawesome/brands/github
      link: https://github.com/CCBR
    - icon: fontawesome/brands/docker
      link: https://hub.docker.com/orgs/nciccbr/repositories

extra_css:
  - css/custom.css
extra_javascript:
  - js/custom.js

# Extensions
markdown_extensions:
  - markdown.extensions.admonition
  - markdown.extensions.attr_list
  - markdown.extensions.md_in_html
  - markdown.extensions.def_list
  - markdown.extensions.footnotes
  - markdown.extensions.meta
  - markdown.extensions.toc:
      permalink: true
  - pymdownx.arithmatex:
      generic: true
  - pymdownx.caret
  - pymdownx.critic
  - pymdownx.details
  - pymdownx.highlight
  - pymdownx.inlinehilite
  - pymdownx.keys
  - pymdownx.mark
  - pymdownx.smartsymbols
  - pymdownx.snippets:
      check_paths: true
  - pymdownx.superfences
  - pymdownx.tabbed
  - pymdownx.tasklist:
      custom_checkbox: true
  - pymdownx.tilde

# Page Tree
nav:
  - Home: index.md
  - User Guide:
      - Introduction: guide/intro.md
      - Usage: guide/usage.md
      - Output: guide/output.md
      - Parameters: guide/params.md
      - Genomes: guide/genomes.md
      - Spike-in Normalization: guide/spike-in.md
      - Troubleshooting: guide/troubleshooting.md
  - Developer Guide:
      - How to contribute: devs/contributing.md
      #- Release guide: devs/release-guide.md
      - Contributors: devs/contributors.md
  - Changelog: changelog.md