MetDNA2/NAMESPACE at main · ZhuMetLab/MetDNA2 · GitHub

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# Generated by roxygen2: do not edit by hand

export(MetDNA2)
export(annotateAdductMRN)
export(annotateCleanMSMS)
export(annotateInitialSeed)
export(annotateMRN)
export(annotateMetaboliteMRN)
export(annotatePeakGroup)
export(authenticateAnnotationCredential)
export(authenticateFormulaCredential)
export(authenticatePeakGroupCredential)
export(calibrateRT)
export(changeTags)
export(checkElement)
export(checkQuality)
export(concisePeak2PeakGroup)
export(concisePeakGroup2Annotation)
export(concisePeakGroup2PeakGroup)
export(convertAnnotationTable2InitialId)
export(convertMs1Data2SpecAnnotationClass)
export(convertMs2RData)
export(convertResultMatrix2Tags)
export(convertSemiTargetedResult2LongTable)
export(convertSpecAnnotationClass2Table)
export(convertSpectraData)
export(convertTags2ResultMatrix)
export(fixNoLossSpace)
export(generateExportTable)
export(generateExportTablePeakGroup)
export(generateFiles4FormulaPrediction)
export(generateFormulaResult)
export(generateMetDNA2AnnoClass)
export(generateMetDNA2Annotation)
export(generateMetDNA2Report)
export(generatePeakGroup)
export(generateResultTable4AllAnnotation)
export(getCcsRange)
export(getLinerScore)
export(getNeighbor)
export(getPostfix)
export(getTrapezoidalScore)
export(groupRT)
export(groupRT2)
export(inteMs2)
export(interpretBiology)
export(loadSpecDB)
export(mapProgress)
export(mapProgressPrint)
export(matchMs1WithSpecLib)
export(matchMs2WithSpecLib)
export(modifyOutputResult)
export(pasteElement)
export(plotIdMs2)
export(plotIdShiftMs2)
export(plotNeighbor)
export(plotPathwayBar)
export(plotPathwayBoxplot)
export(plotPathwayHeatmap)
export(plotPathwayHeatmapMet)
export(plotPathwayScatter)
export(plotPseudoMs1Spec)
export(plotRtCalibration)
export(plotVolcano)
export(predictRT)
export(purifyMs2)
export(rankGenFormFormula)
export(readCEF)
export(readInitialAnnotation)
export(readMGF)
export(readMs1)
export(readMs2)
export(readMzXML)
export(refineAnnotation)
export(refineAnnotationFeatureClustering)
export(refineAnnotationFormula)
export(removeFiles)
export(removeRedundancy)
export(removeReplicateSeedAnnotationFromFinalTable)
export(removeRingEffect)
export(retieveUpperPath)
export(runGenForm)
export(runMetDNA2)
export(runSpecMatch)
export(searchFormulaDB)
export(showTags2)
export(splitFormula)
export(splitInchiKey)
export(statNumListPeakGroup)
export(statTypeListPeakGroup)
export(sumFormula)
export(trans2Matrix)
exportClasses(PeakInfo)
importClassesFrom(SpectraTools,'SpectraData')
importFrom(magrittr,'%$%')
importFrom(magrittr,'%>%')