annotation cols is different with transcriptId cols

[teryyoung]

here is one row of my results, TxDb= TxDb.Hsapiens.UCSC.hg38.knownGene.

seqnames | start | end | width | strand | annotation | geneChr | geneStart | geneEnd | geneLength | geneStrand | geneId | transcriptId | distanceToTSS | symbol | annotation2

chr19 | 49301501 | 49303500 | 2000 | * | Intron (ENST00000335875.9/28968, intron 7 of 11) | 19 | 49308797 | 49308868 | 72 | 2 | 100422979 | ENST00000584846.1 | 5368 | MIR4324 | Intron

In fact, this region is in the ENST00000335875.9(SLC6A16) ranges(49289638-49340330) , while geneChr/Start/End et.al. transcriptId shows the wrong annotation ENST00000584846(MIR4324) .

[QingCheZhang]

I have the same problem

[tbiuliwo]

I have the same question too.