scRegulate/.github/workflows/python-publish.yml at main · YDaiLab/scRegulate · GitHub

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name: Upload Python Package

on:
  release:
    types: [published]

permissions:
  contents: read

jobs:
  release-build:
    runs-on: ubuntu-latest

    steps:
      - name: Checkout code
        uses: actions/checkout@v4

      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: "3.10"

      - name: Install build tools
        run: |
          python -m pip install --upgrade pip
          pip install build

      - name: Inject version from GitHub tag
        run: |
          VERSION="${GITHUB_REF##*/}"
          VERSION="${VERSION#v}"  # Strip leading 'v' if present
          echo "__version__ = \"${VERSION}\"" > scregulate/__version__.py
          cat scregulate/__version__.py


      - name: Build distributions
        run: python -m build

      - name: Upload distributions as artifacts
        uses: actions/upload-artifact@v4
        with:
          name: release-dists
          path: dist/

  pypi-publish:
    runs-on: ubuntu-latest
    needs: release-build
    permissions:
      id-token: write

    environment:
      name: pypi
      url: https://pypi.org/project/scRegulate/${{ github.event.release.tag_name }}

    steps:
      - name: Download built distributions
        uses: actions/download-artifact@v4
        with:
          name: release-dists
          path: dist/

      - name: Publish to PyPI
        uses: pypa/gh-action-pypi-publish@release/v1
        with:
          packages-dir: dist/