pyproject.toml

# pyproject.toml
[build-system]
requires = ["setuptools>=68", "wheel", "build"]
build-backend = "setuptools.build_meta"

[project]
name = "ragulate-bio"
version = "1.1.2"
description = "Retrieval augmented validation for TF inference in single cell biology"
readme = "README.md"
requires-python = ">=3.9"
license = { text = "MIT" }
authors = [{ name = "Mehrdad Zandigohar" }]
keywords = ["single-cell", "regulatory networks", "RAG", "bioinformatics"]
classifiers = [
  "Programming Language :: Python :: 3",
  "License :: OSI Approved :: MIT License",
  "Intended Audience :: Science/Research",
  "Topic :: Scientific/Engineering :: Bio-Informatics"
]
dependencies = ["rank-bm25", "numpy>=1.23"]

[tool.setuptools]
packages = ["ragulate_bio"]  # no src layout, package at repo root

[project.scripts]
ragulate-bio = "ragulate_bio.cli:main"