The ascending Maize files are called Maize_chr_sorted_
The descending Maize files are called Maize_chr_decrease_
The replaced "?" with "-" in decreasing order files are called Maize_replaced_
The ascending Teosinte files are called Teosinte_chr_sorted_
The descending Teosinte files are called Teosinte_chr_decrease_
The replaced "?" with "-" in decreasing order files are called Teosinte_replaced_
My draft is called R draft