From 7f676e65536518289e65447361f224e3eba0aac3 Mon Sep 17 00:00:00 2001
From: Gonzalo Vidal <35148159+Gonza10V@users.noreply.github.com>
Date: Wed, 2 Apr 2025 11:30:18 -0600
Subject: [PATCH] adding sbol2 experimental data

closes #13
---
 .../ExperimentalData.ipynb                    | 104 ++++++++++++++++++
 1 file changed, 104 insertions(+)
 create mode 100644 examples/sbol2/CreatingSBOL2Objects/ExperimentalData.ipynb

diff --git a/examples/sbol2/CreatingSBOL2Objects/ExperimentalData.ipynb b/examples/sbol2/CreatingSBOL2Objects/ExperimentalData.ipynb
new file mode 100644
index 0000000..294f0cf
--- /dev/null
+++ b/examples/sbol2/CreatingSBOL2Objects/ExperimentalData.ipynb
@@ -0,0 +1,104 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Creating an ExperimentalData\n",
+    "\n",
+    "`ExperimentalData` objects have the following properties:\n",
+    "- `uri`\n",
+    "- `attachments`\n",
+    "\n",
+    "\n",
+    "In this tutorial, we will create an empty `ExperimentalData`. To do this, we will only need to set the `uri` property, we will not add `Attachments` check out the cooresponding notebooks.\n",
+    "\n",
+    "For more information on the `ExperimentalData` class and its properties, check out page 54 of the SBOL 2.3.0 specifications which can be found at the following [link](https://sbolstandard.org/docs/SBOL2.3.0.pdf)."
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Import the module"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 5,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import sbol2"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Create the document and set the namespace"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 6,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "doc = sbol2.Document()\n",
+    "sbol2.setHomespace('https://github.com/SynBioDex/SBOL-Notebooks')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Create an `ExperimentalData` object and add it to the document"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 7,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "expdata = sbol2.ExperimentalData('example_experimentaldata')\n",
+    "doc.add(expdata)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 8,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "report = doc.validate()\n",
+    "if (report == 'Valid.'):\n",
+    "    doc.write('comp_def_example.xml')\n",
+    "else:\n",
+    "    print(report)"
+   ]
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "GLLDB",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.9.19"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}