fix format check workflow #272
Maximilian-Stefan-ErnstAnnotations
10 errors
|
build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/tutorials/collection/multigroup.md:83-87
```@example mg; ansicolor = true
sem_fit = fit(model_ml_multigroup)
update_estimate!(partable, sem_fit)
details(partable)
```
exception =
UndefVarError: `model_ml_multigroup` not defined in `Main.__atexample__named__mg`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ multigroup.md:84
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
|
|
build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/tutorials/collection/multigroup.md:70-76
```@example mg; ansicolor = true
model_ml_multigroup = SemEnsemble(
specification = partable,
data = dat,
column = :school,
groups = groups)
```
exception =
UndefVarError: `partable` not defined in `Main.__atexample__named__mg`
Suggestion: add an appropriate import or assignment. This global was declared but not assigned.
Stacktrace:
[1] top-level scope
@ multigroup.md:71
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
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build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/tutorials/collection/multigroup.md:58-66
```@example mg; ansicolor = true
groups = [:Pasteur, :Grant_White]
partable = EnsembleParameterTable(
graph,
observed_vars = observed_vars,
latent_vars = latent_vars,
groups = groups)
```
exception =
UndefVarError: `graph` not defined in `Main.__atexample__named__mg`
Suggestion: add an appropriate import or assignment. This global was declared but not assigned.
Stacktrace:
[1] top-level scope
@ multigroup.md:61
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
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build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@setup` block in docs/src/tutorials/collection/multigroup.md:24-37
```@setup mg
latent_vars = [:visual, :textual, :speed]
observed_vars = Symbol.(:x, 1:9)
graph = @stenograph begin
# measurement model
visual → fixed(1.0, 1.0)*x1 + label(:λ₂, :λ₂)*x2 + label(:λ₃, :λ₃)*x3
textual → fixed(1.0, 1.0)*x4 + label(:λ₅, :λ₅)*x5 + label(:λ₆, :λ₆)*x6
speed → fixed(1.0, 1.0)*x7 + label(:λ₈, :λ₈)*x8 + label(:λ₉, :λ₉)*x9
# variances and covariances
_(observed_vars) ↔ _(observed_vars)
_(latent_vars) ⇔ _(latent_vars)
end
```
exception =
LoadError: UndefVarError: `StenoGraphs.SimpleNode` not defined in `Main.__atexample__named__mg`
Suggestion: check for spelling errors or missing imports.
in expression starting at string:4
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build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/performance/simulation.md:66-73
```@example replace_observed
new_observed = SemObservedData(;data = data_2, specification = partable)
my_optimizer = SemOptimizerOptim()
new_optimizer = update_observed(my_optimizer, new_observed)
```
exception =
UndefVarError: `partable` not defined in `Main.__atexample__named__replace_observed`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ simulation.md:68
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
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build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/performance/simulation.md:48-61
```@example replace_observed
data = example_data("political_democracy")
data_1 = data[1:30, :]
data_2 = data[31:75, :]
model = Sem(
specification = partable,
data = data_1
)
model_updated = replace_observed(model; data = data_2, specification = partable)
```
exception =
UndefVarError: `partable` not defined in `Main.__atexample__named__replace_observed`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ simulation.md:55
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
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build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@setup` block in docs/src/performance/simulation.md:11-46
```@setup replace_observed
using StructuralEquationModels
observed_vars = [:x1, :x2, :x3, :y1, :y2, :y3, :y4, :y5, :y6, :y7, :y8]
latent_vars = [:ind60, :dem60, :dem65]
graph = @stenograph begin
# loadings
ind60 → fixed(1)*x1 + x2 + x3
dem60 → fixed(1)*y1 + y2 + y3 + y4
dem65 → fixed(1)*y5 + y6 + y7 + y8
# latent regressions
ind60 → dem60
dem60 → dem65
ind60 → dem65
# variances
_(observed_vars) ↔ _(observed_vars)
_(latent_vars) ↔ _(latent_vars)
# covariances
y1 ↔ y5
y2 ↔ y4 + y6
y3 ↔ y7
y8 ↔ y4 + y6
end
partable = ParameterTable(
graph,
latent_vars = latent_vars,
observed_vars = observed_vars
)
```
exception =
LoadError: UndefVarError: `StenoGraphs.SimpleNode` not defined in `Main.__atexample__named__replace_observed`
Suggestion: check for spelling errors or missing imports.
in expression starting at string:6
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build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/developer/loss.md:237-245
```@example loss
model_ml = SemFiniteDiff(
specification = partable,
data = example_data("political_democracy"),
loss = MaximumLikelihood()
)
model_fit = fit(model_ml)
```
exception =
UndefVarError: `partable` not defined in `Main.__atexample__named__loss`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ loss.md:238
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
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build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/developer/loss.md:113-121
```@example loss
model_new = Sem(
specification = partable,
data = example_data("political_democracy"),
loss = (SemML, myridge)
)
model_fit = fit(model_new)
```
exception =
UndefVarError: `myridge` not defined in `Main.__atexample__named__loss`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ loss.md:114
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
|
|
build:
../../../.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl#L47
failed to run `@example` block in docs/src/developer/loss.md:39-83
```@example loss
observed_vars = [:x1, :x2, :x3, :y1, :y2, :y3, :y4, :y5, :y6, :y7, :y8]
latent_vars = [:ind60, :dem60, :dem65]
graph = @stenograph begin
# loadings
ind60 → fixed(1)*x1 + x2 + x3
dem60 → fixed(1)*y1 + y2 + y3 + y4
dem65 → fixed(1)*y5 + y6 + y7 + y8
# latent regressions
ind60 → label(:a)*dem60
dem60 → label(:b)*dem65
ind60 → label(:c)*dem65
# variances
_(observed_vars) ↔ _(observed_vars)
_(latent_vars) ↔ _(latent_vars)
# covariances
y1 ↔ y5
y2 ↔ y4 + y6
y3 ↔ y7
y8 ↔ y4 + y6
end
partable = ParameterTable(
graph,
latent_vars = latent_vars,
observed_vars = observed_vars
)
parameter_indices = getindex.([param_indices(partable)], [:a, :b, :c])
myridge = Ridge(0.01, parameter_indices)
model = SemFiniteDiff(
specification = partable,
data = example_data("political_democracy"),
loss = (SemML, myridge)
)
model_fit = fit(model)
```
exception =
UndefVarError: `StenoGraphs.SimpleNode` not defined in `Main.__atexample__named__loss`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ loss.md:43
[2] eval(m::Module, e::Any)
@ Core ./boot.jl:489
[3] #61
@ ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:879 [inlined]
[4] cd(f::Documenter.var"#61#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#60"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:878
[6] (::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#12#13"{Type{InterruptException}, Documenter.var"#59#60"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:542
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:653
[9] capture(f::Documenter.var"#59#60"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/MR051/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/xvqbW/src/expander_pipeline.jl:877
|