README.md

Entrance to Squalomix sequence archive

Link to the Squalomix BLAST page

Sequence data from Hara et al., 2018

Cite: Hara et al. "Shark genomes provide insights into elasmobranch evolution and the origin of vertebrates" Nature Ecology & Evolution, 2018. 2: 1761-1771

Brownbanded bamboo shark Chiloscyllium punctatum

Cpunctatum_v1.0: Genome, Gene model (FigShare), Transcriptome

Cloudy catshark Scyliorhinus torazame

Storazame_v1.0: Genome, Gene model (FigShare), Transcriptome

Whale shark Rhincodon typus

Rtypus_kobe_v1.0: Files in FigShare

Miscellaneous

Shark genome scaffolds adopted from earlier assembly versions
Manually curated shark/non-shark genes
(for details, see Supplementary Data 1 and 2 of Hara et al., 2018. Nat. Ecol. Evol. 2: 1761-1771)

Sequence data from Kadota et al., Sci Rep 2020

Cite: Kadota et al., Sci Rep 2020

Brownbanded bamboo shark Chiloscyllium punctatum

Cpunctatum_v2.1: Genome

Sequence data from Yamaguchi et al., Genome Res 2023 (bioRxiv 2022)

Cite: Yamaguchi et al., Genome Res 2023

Zebra shark Stegostoma tigrinum (formerly, fasciatum)

sSteFas1.1 at NCBI: Genome, Genome browser

Whale shark Rhincodon typus

sRhiTyp1.1 at NCBI: Genome

Other resources

Taxonomic list of chondrichthyan species with sequenced genomes displayed at GenomeSync.