I've been trying to run the program with local data, but the readme only describes how to create a genbank_ids file when the program seems to require a config.yaml as an input. Could you explain how to create a config.yaml and or genbank_ids file to run with local files. Does the "Snakefile_wget_roary_heatmap_upset_COG" file have to be modified as well (seems to only want to download Genbankifiles from NCBI)?
Thank you
I've been trying to run the program with local data, but the readme only describes how to create a genbank_ids file when the program seems to require a config.yaml as an input. Could you explain how to create a config.yaml and or genbank_ids file to run with local files. Does the "Snakefile_wget_roary_heatmap_upset_COG" file have to be modified as well (seems to only want to download Genbankifiles from NCBI)?
Thank you