diff --git a/.changeset/remove-cli-kit-minimatch.md b/.changeset/remove-cli-kit-minimatch.md
new file mode 100644
index 0000000000..08d1b5d330
--- /dev/null
+++ b/.changeset/remove-cli-kit-minimatch.md
@@ -0,0 +1,5 @@
+---
+'@shopify/cli-kit': patch
+---
+
+Remove the minimatch dependency from cli-kit glob matching.
diff --git a/packages/cli-kit/package.json b/packages/cli-kit/package.json
index 1725431d06..6418c311f6 100644
--- a/packages/cli-kit/package.json
+++ b/packages/cli-kit/package.json
@@ -143,7 +143,6 @@
     "liquidjs": "10.26.0",
     "lodash": "4.17.23",
     "macaddress": "0.5.3",
-    "minimatch": "9.0.8",
     "mrmime": "1.0.1",
     "network-interfaces": "1.1.0",
     "node-abort-controller": "3.1.1",
diff --git a/packages/cli-kit/src/public/node/fs.test.ts b/packages/cli-kit/src/public/node/fs.test.ts
index d30612b5b9..38674abc48 100644
--- a/packages/cli-kit/src/public/node/fs.test.ts
+++ b/packages/cli-kit/src/public/node/fs.test.ts
@@ -22,6 +22,7 @@ import {
   copyDirectoryContents,
   symlink,
   fileRealPath,
+  matchGlob,
 } from './fs.js'
 import {joinPath, normalizePath} from './path.js'
 import * as array from '../common/array.js'
@@ -319,6 +320,41 @@ describe('glob', () => {
   })
 })
 
+describe('matchGlob', () => {
+  test('matches liquid file patterns with native Node glob semantics', () => {
+    expect(matchGlob('theme.liquid', '*.liquid')).toBe(true)
+    expect(matchGlob('layout/theme.liquid', '*.liquid')).toBe(false)
+    expect(matchGlob('layout/theme.liquid', '**/*.liquid')).toBe(true)
+    expect(matchGlob('assets/theme.css', '*.liquid')).toBe(false)
+  })
+
+  test('matches watch-style globs used by extension file watching', () => {
+    expect(matchGlob('src/main.rs', 'src/**/*.rs')).toBe(true)
+    expect(matchGlob('src/lib/main.rs', 'src/**/*.rs')).toBe(true)
+    expect(matchGlob('src/main.ts', 'src/**/*.rs')).toBe(false)
+    expect(matchGlob('/tmp/my-function/src/main.rs', '/tmp/my-function/src/**/*.rs')).toBe(true)
+    expect(matchGlob('/tmp/my-function/src/lib/main.rs', '/tmp/my-function/src/**/*.rs')).toBe(true)
+  })
+
+  test('matches project config selection globs', () => {
+    expect(matchGlob('extensions/my-ext/shopify.extension.toml', 'extensions/*/*.extension.toml')).toBe(true)
+    expect(matchGlob('extensions/nested/my-ext/shopify.extension.toml', 'extensions/*/*.extension.toml')).toBe(false)
+    expect(matchGlob('web/shopify.web.toml', '**/shopify.web.toml')).toBe(true)
+  })
+
+  test('supports matchBase for theme ignore patterns', () => {
+    expect(matchGlob('assets/theme.css', '*.css', {matchBase: true, noglobstar: true})).toBe(true)
+    expect(matchGlob('assets/theme.css', '*.liquid', {matchBase: true, noglobstar: true})).toBe(false)
+  })
+
+  test('supports noglobstar for theme ignore patterns', () => {
+    expect(
+      matchGlob('templates/customers/account.json', 'templates/**/*.json', {matchBase: true, noglobstar: true}),
+    ).toBe(true)
+    expect(matchGlob('templates/404.json', 'templates/**/*.json', {matchBase: true, noglobstar: true})).toBe(false)
+  })
+})
+
 describe('detectEOL', () => {
   test('detects the EOL of a file', async () => {
     // Given
diff --git a/packages/cli-kit/src/public/node/fs.ts b/packages/cli-kit/src/public/node/fs.ts
index 5948c9f6bb..266eec8625 100644
--- a/packages/cli-kit/src/public/node/fs.ts
+++ b/packages/cli-kit/src/public/node/fs.ts
@@ -16,8 +16,9 @@ import {
 
 import {sep, join} from 'pathe'
 import {findUp as internalFindUp, findUpSync as internalFindUpSync} from 'find-up'
-import {minimatch} from 'minimatch'
 import fastGlobLib from 'fast-glob'
+// eslint-disable-next-line no-restricted-imports -- Node 22 native glob matching is not wrapped by cli-kit path helpers.
+import * as nodePath from 'node:path'
 import {
   mkdirSync as fsMkdirSync,
   readFileSync as fsReadFileSync,
@@ -688,10 +689,12 @@ export function findPathUpSync(
 }
 
 export interface MatchGlobOptions {
-  matchBase: boolean
-  noglobstar: boolean
+  matchBase?: boolean
+  noglobstar?: boolean
 }
 
+const {matchesGlob} = nodePath as typeof nodePath & {matchesGlob(path: string, pattern: string): boolean}
+
 /**
  * Matches a key against a glob pattern.
  * @param key - The key to match.
@@ -699,8 +702,31 @@ export interface MatchGlobOptions {
  * @param options - The options to refine the matching approach.
  * @returns true if the key matches the pattern, false otherwise.
  */
-export function matchGlob(key: string, pattern: string, options?: MatchGlobOptions): boolean {
-  return minimatch(key, pattern, options)
+export function matchGlob(key: string, pattern: string, options: MatchGlobOptions = {}): boolean {
+  const effectivePattern = options.noglobstar ? patternWithoutGlobstars(pattern) : pattern
+
+  if (matchesGlob(key, effectivePattern)) return true
+
+  if (options.matchBase && !hasPathSeparator(effectivePattern)) {
+    return matchesGlob(baseName(key), effectivePattern)
+  }
+
+  return false
+}
+
+function patternWithoutGlobstars(pattern: string): string {
+  return pattern
+    .split(/([/\\])/)
+    .map((part) => (part === '**' ? '*' : part))
+    .join('')
+}
+
+function hasPathSeparator(path: string): boolean {
+  return path.includes('/') || path.includes('\\')
+}
+
+function baseName(path: string): string {
+  return path.split(/[/\\]/).pop() ?? path
 }
 
 /**
diff --git a/pnpm-lock.yaml b/pnpm-lock.yaml
index 6355cc3989..990ab02abb 100644
--- a/pnpm-lock.yaml
+++ b/pnpm-lock.yaml
@@ -420,9 +420,6 @@ importers:
       macaddress:
         specifier: 0.5.3
         version: 0.5.3
-      minimatch:
-        specifier: 9.0.8
-        version: 9.0.8
       mrmime:
         specifier: 1.0.1
         version: 1.0.1