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{file = "urllib3-2.0.5.tar.gz", hash = "sha256:13abf37382ea2ce6fb744d4dad67838eec857c9f4f57009891805e0b5e123594"}, -] - -[package.extras] -brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"] -secure = ["certifi", "cryptography (>=1.9)", "idna (>=2.0.0)", "pyopenssl (>=17.1.0)", "urllib3-secure-extra"] -socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"] -zstd = ["zstandard (>=0.18.0)"] - -[metadata] -lock-version = "2.0" -python-versions = ">=3.10,<3.12" -content-hash = "51031b1b294183ca54c3d62ec3fe1e2d8ac17f7fcf6a29a985deb491a26c0c95" From 323b6fa52ac77a7fc0c956fffd4590841f3a6ae1 Mon Sep 17 00:00:00 2001 From: David Schneller Date: Tue, 22 Oct 2024 18:39:39 +0200 Subject: [PATCH 2/5] Update plasticity matrix script; go up to order 8 --- src/seissol_matrices/plasticity_matrices.py | 36 +++++++++++++++++---- 1 file changed, 30 insertions(+), 6 deletions(-) diff --git a/src/seissol_matrices/plasticity_matrices.py b/src/seissol_matrices/plasticity_matrices.py index e3823ce..e7b3822 100644 --- a/src/seissol_matrices/plasticity_matrices.py +++ b/src/seissol_matrices/plasticity_matrices.py @@ -2,7 +2,7 @@ import numpy as np import os -from seissol_matrices import basis_functions, dg_matrices, xml_io +from seissol_matrices import basis_functions, dg_matrices, json_io from seissol_matrices.plasticity import stroud @@ -18,7 +18,7 @@ def __init__(self, order): self.dg3_generator = dg_matrices.dg_generator(order, d=3) self.order = order - def generate_Vandermonde(self, mode): + def nodes(self, mode): assert mode in ["ip", "nb"] if mode == "nb": nodes = parse_nodes( @@ -26,6 +26,11 @@ def generate_Vandermonde(self, mode): ) else: nodes, _ = stroud.stroud(self.order + 1) + + return nodes + + def generate_Vandermonde(self, mode): + nodes = self.nodes(mode) m = self.bf3_generator.number_of_basis_functions() n = nodes.shape[0] @@ -40,6 +45,23 @@ def generate_Vandermonde(self, mode): return vandermonde + def generate_VandermondeDerivative(self, mode): + nodes = self.nodes(mode) + m = self.bf3_generator.number_of_basis_functions() + n = nodes.shape[0] + + vandermonde = np.zeros((3, n, m)) + + for k in range(3): + for i in range(n): + for j in range(m): + node = nodes[i] + vandermonde[k, i, j] = self.bf3_generator.eval_diff_basis( + [node[0], node[1], node[2]], j, k + ) + + return vandermonde + def generate_Vandermonde_inv(self, mode): vandermonde = self.generate_Vandermonde(mode) if mode == "nb": @@ -57,10 +79,12 @@ def generate_Vandermonde_inv(self, mode): if __name__ == "__main__": for mode in ["nb", "ip"]: - for order in range(2, 8): + for order in range(2, 9): generator = PlasticityGenerator(order) vandermonde = generator.generate_Vandermonde(mode) + vandermondeDerivative = generator.generate_VandermondeDerivative(mode) vandermonde_inv = generator.generate_Vandermonde_inv(mode) - filename = f"output/plasticity_{mode}_matrices_{order}.xml" - xml_io.write_matrix(vandermonde, "v", filename) - xml_io.write_matrix(vandermonde_inv, "vInv", filename) + filename = f"output/plasticity_{mode}_matrices_{order}.json" + json_io.write_matrix(vandermonde, "v", filename) + json_io.write_matrix(vandermondeDerivative, "vD", filename) + json_io.write_matrix(vandermonde_inv, "vInv", filename) From 0332dc4d24bb0e8fb35198a5de61487b028e3ce8 Mon Sep 17 00:00:00 2001 From: David Schneller Date: Tue, 22 Oct 2024 18:39:50 +0200 Subject: [PATCH 3/5] Allow Python 3.12 --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 59d82c1..02b8645 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -9,7 +9,7 @@ authors = [ readme = "README.md" [tool.poetry.dependencies] -python = ">=3.10,<3.12" +python = ">=3.10" numpy = "^1.24.2" scipy = "^1.10.0" From 69455cb34de5fa70ffe776115c76f1b05e69eaa4 Mon Sep 17 00:00:00 2001 From: David Schneller Date: Wed, 23 Oct 2024 14:22:09 +0200 Subject: [PATCH 4/5] Update CI --- .github/workflows/main.yml | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 044569a..3fd8cc8 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -14,13 +14,12 @@ jobs: steps: # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - name: Install poetry run: pipx install poetry - - uses: actions/setup-python@v4 + - uses: actions/setup-python@v5 with: python-version: '3.10' - cache: 'poetry' - run: poetry install --with dev,ci - name: Unit tests and coverage From f2f8c40f0e6bc84e2ec64ad69512d07b41eb7da4 Mon Sep 17 00:00:00 2001 From: David Schneller Date: Thu, 2 Jan 2025 19:54:24 +0100 Subject: [PATCH 5/5] Format code --- src/seissol_matrices/plasticity_matrices.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/seissol_matrices/plasticity_matrices.py b/src/seissol_matrices/plasticity_matrices.py index e7b3822..d1635fc 100644 --- a/src/seissol_matrices/plasticity_matrices.py +++ b/src/seissol_matrices/plasticity_matrices.py @@ -26,7 +26,7 @@ def nodes(self, mode): ) else: nodes, _ = stroud.stroud(self.order + 1) - + return nodes def generate_Vandermonde(self, mode):