This is a pytest plugin that enables next generation sequencing pytest fixtures, including fastq files and output files from a variety of bioinformatics applications and tools. There are sequencing fixtures for some common sample layouts, but it's easy to generate additional sample fixture layouts using fixture factories.
See the pytest-ngsfixtures documentation for more information.
- Free software: GNU General Public License v3
- ngs data sets of different sizes
- predefined sample layouts
- factories for generating new sample layouts
- result files from a variety of bioinformatics applications and tools
$ conda install pytest-ngsfixturesThis package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.