txtools/NAMESPACE at master · SchwartzLab/txtools · GitHub

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# Generated by roxygen2: do not edit by hand

export(getDumpedAlignments)
export(hlp_coverageTab_mc)
export(hlp_genCoorTab_mc)
export(hlp_nucFreqTab_mc)
export(hlp_plot_metageneRegions)
export(mm_geneAnnot)
export(sc_faGenome)
export(sc_geneAnnot)
export(tk_faGenome)
export(tk_geneAnnot)
export(tx_add_diffNucToRef)
export(tx_add_diffNucToRefRatio)
export(tx_add_endRatio)
export(tx_add_endRatio1bpDS)
export(tx_add_endRatio1bpUS)
export(tx_add_exonNumber)
export(tx_add_exonPlace)
export(tx_add_geneRegion)
export(tx_add_misincCount)
export(tx_add_misincRate)
export(tx_add_misincRateNucSpec)
export(tx_add_misincorpRateNucSpec)
export(tx_add_motifPresence)
export(tx_add_nucTotal)
export(tx_add_pos)
export(tx_add_refSeqDT)
export(tx_add_relTxPos)
export(tx_add_rollingMean)
export(tx_add_siteAnnotation)
export(tx_add_spliceSitesLogical)
export(tx_add_startRatio)
export(tx_add_startRatio1bpDS)
export(tx_add_startRatio1bpUS)
export(tx_combineTxReads)
export(tx_complete_DT)
export(tx_counts)
export(tx_covNucFreqDT)
export(tx_coverageDT)
export(tx_cutEnds_DT)
export(tx_cut_geneAnnotBytxDT)
export(tx_data_caseStudy2)
export(tx_dm3_geneAnnot)
export(tx_extend_UTR)
export(tx_filter_maxWidth)
export(tx_filter_max_width)
export(tx_getUnassignedAlignments)
export(tx_get_flankSequence)
export(tx_get_flanksFromLogicAnnot)
export(tx_get_geneLengths)
export(tx_get_metageneAtCDS)
export(tx_get_metageneExons)
export(tx_get_metageneRegions)
export(tx_get_transcriptSeqs)
export(tx_get_unassignedAlignments)
export(tx_load_bam)
export(tx_load_bed)
export(tx_load_genome)
export(tx_load_rdsDT)
export(tx_makeDT_covNucFreq)
export(tx_makeDT_coverage)
export(tx_makeDT_nucFreq)
export(tx_merge_DT)
export(tx_nucFreqDT)
export(tx_orderDT)
export(tx_plot_ggseqlogo)
export(tx_plot_metageneAtCDS)
export(tx_plot_metageneExons)
export(tx_plot_metageneRegions)
export(tx_plot_nucFreq)
export(tx_plot_numeric)
export(tx_plot_staEndCov)
export(tx_reads)
export(tx_reads_mc)
export(tx_sampleByGenes)
export(tx_sample_GRList)
export(tx_shift_geneWise)
export(tx_split_DT)
export(tx_test_LRTedgeR)
export(tx_test_ttest)
export(tx_unifyTxDTL)
export(window_around)
importFrom(rlang,.data)