From 742790b81dae1d8e831a256e2a8b2f64dabedf47 Mon Sep 17 00:00:00 2001 From: wingertkm-NIH Date: Mon, 9 Mar 2026 16:19:51 -0400 Subject: [PATCH] Update 02_cellranger_and_fastq_download.md --- notebooks/scRNA-seq/02_cellranger_and_fastq_download.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/notebooks/scRNA-seq/02_cellranger_and_fastq_download.md b/notebooks/scRNA-seq/02_cellranger_and_fastq_download.md index 325f5ea..709bb5a 100644 --- a/notebooks/scRNA-seq/02_cellranger_and_fastq_download.md +++ b/notebooks/scRNA-seq/02_cellranger_and_fastq_download.md @@ -209,8 +209,8 @@ export PATH=$PATH:$HOME/cellranger-10.0.0 cellranger count \ --id=pbmc_1k_run \ --create-bam=true \ - --transcriptome=/home/YOURNAME/refdata-gex-GRCh38-2020-A \ - --fastqs=/home/YOURNAME/test_fastqs/pbmc_1k/pbmc_1k_v3_fastqs/ \ + --transcriptome=/home/YOURUSERNAME/refdata-gex-GRCh38-2020-A \ + --fastqs=/home/YOURUSERNAME/test_fastqs/pbmc_1k/pbmc_1k_v3_fastqs/ \ --sample=pbmc_1k_v3 \ --localcores=16 \ --localmem=100