analyze.h

#ifndef ANALYZE_H
#define ANALYZE_H

#include <set>
#include <QtMath>
#include <QVector3D>
#include "utils.h"
#include "colldetection.h"

//获取soma附近的二分叉和多分叉
vector<int> getMulfurcationsCountNearSoma(float dist_thre, XYZ somaCoordinate, V_NeuronSWC_list segments);
//获取颜色突变点
map<string, set<int>> getColorChangedPoints(V_NeuronSWC_list segments);
//获取游离的线的末端点
set<string> getDissociativeSegEndPoints(V_NeuronSWC_list segments);
//获取背景中的漂浮分支标记点
set<string> getDissociativeSegsMarkerPoints(QList<NeuronSWC> neuron, XYZ somaCoordinate);
//获取角度错误的树突分叉点
set<string> getAngleErrPoints(QTextStream& logOut, float dist_thre, XYZ somaCoordinate, V_NeuronSWC_list& segments, bool isSomaExists, bool needConsiderType);
//计算两个向量的夹角
float calculateAngleofVecs(QVector3D vector1, QVector3D vector2);
//将soma点的半径设置为1.234
void setSomaPointRadius(QString fileSaveName, V_NeuronSWC_list segments, XYZ somaCoordinate);
//从swc文件中获取soma点的序号
int getSomaNumberFromSwcFile(QString filePath, float r);

//analyze
void analyzeSomaNearBy(QTextStream& logOut, XYZ somaCoordinate, V_NeuronSWC_list segments, float dist_thre);//分析soma处是否连接至一点,需要知道soma位置
vector<CellAPO> analyzeColorMutation(QTextStream& logOut, bool isSomaExists, XYZ somaCoordinate, V_NeuronSWC_list segments, float dist_thre);//分析是否存在颜色突变,需要知道soma位置
vector<CellAPO> analyzeColorMutationForHB(QTextStream& logOut, bool isSomaExists, XYZ somaCoordinate, V_NeuronSWC_list segments, float dist_thre);//分析人脑神经元是否存在颜色突变,需要知道soma位置
vector<CellAPO> analyzeDissociativeSegs(QTextStream& logOut, V_NeuronSWC_list segments, XYZ somaCoordinate);//分析是否存在游离的线段
vector<CellAPO> analyzeAngles(QTextStream& logOut, XYZ somaCoordinate, V_NeuronSWC_list& segments, float dist_thre, bool isSomaExists);//分析树突分叉的角度是否合理,最好知道soma位置

#endif // ANALYZE_H