brc.parent/Makefile at master · SEEDtk/brc.parent · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
TOP_DIR = ../..
include $(TOP_DIR)/tools/Makefile.common

DEPLOY_RUNTIME ?= /kb/runtime
TARGET ?= /kb/deployment

WRAP_JAVA_TOOL = wrap_java
WRAP_JAVA_SCRIPT = bash $(TOOLS_DIR)/$(WRAP_JAVA_TOOL).sh

# identify the output jar names here
JARS = kmers.reps dl4j.eval bins.generate kmers.hammer kmers.reps genome.changes

BIN_DIR = $(KB_TOP)/bin
BIN_JAVA = $(foreach mod,$(JARS),$(BIN_DIR)/$(mod))
JAR_JAVA = $(foreach mod,$(JARS),$(SEED_JARS)/$(mod).jar)

all: bin

bin: $(BIN_JAVA) build

test:
	mvn test

show:
	echo jars $(JAR_JAVA)
	echo bins $(BIN_JAVA)
	echo jarDir $(SEED_JARS)

clean:
	mvn clean

$(BIN_DIR)/%: $(SEED_JARS)/%.jar
	$(WRAP_JAVA_SCRIPT) $* $@

build:
	mvn package -Dmaven.test.skip=true

include $(TOP_DIR)/tools/Makefile.common.rules