stargraph/meta.yaml at main · SAMtoBAM/stargraph · GitHub

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package:
  name: stargraph
  version: "1.0.0"  # Change this to your desired version

source:
  git_url: https://github.com/samtobam/stargraph.git
  git_rev: main

build:
  number: 0 # Increment with each new build
  scripts:
    - bin/starfish
    - bin/cnef

requirements:
  build:
  - conda-forge::gxx_linux-64
  - make
  - git

  run:
  - bioconda::pggb=0.7.4
  - bioconda::bedtools=2.31.1
  - bioconda::mash=2.3
  - bioconda::seqkit=2.10.0
  - bioconda::minimap2=2.29
  - bioconda::mummer4=4.0.1
  - conda-forge::r-base=4.4.3
  - conda-forge::r-gggenomes=1.0.1
  - conda-forge::r-svglite=2.1.3
  - bioconda::bioconductor-iranges=2.40.0
  - conda-forge::r-ggplot2=3.5.2
  - conda-forge::r-ggnewscale=0.5.1
  - conda-forge::r-igraph=2.0.3
  - conda-forge::r-ggraph=2.2.1
  - conda-forge::r-tidygraph=1.3.0
  - conda-forge::r-tidyverse=2.0.0
  - conda-forge::r-ggforce=0.5.0
  - conda-forge::r-ggpubr=0.6.0
  - conda-forge::r-gghalves=0.1.4
  - conda-forge::r-ellipsis=0.3.2
  - conda-forge::r-rlang=1.1.7
  - conda-forge::r-textshaping==1.0.4
  - conda-forge::r-systemfonts==1.3.1
  - conda-forge::ncbi-datasets-cli=18.9.0
  - samtools=1.6
  - bioconda::sourmash>=4.9.0
  - conda-forge::sourmash_plugin_branchwater=0.9.13
  - bioconda::blast=2.16.0
  - bioconda::mcl=14.137
  - bioconda::circos=0.69.9
  - bioconda::hmmer=3.4
  - bioconda::metaeuk=7.bba0d80
  - conda-forge::mafft=7.526
  - bioconda::mmseqs2=17.b804f
  - bioconda::eggnog-mapper=2.1.12


test:
  commands:
    - "stargraph.sh --help"

about:
  home: "https://github.com/samtobam/stargraph"
  summary: "Genome-graph based Starship detection tool"