From c0d36058516f7dcd6d66c5a1427f6d44c37a65c3 Mon Sep 17 00:00:00 2001
From: ohewryk <ohewryk@sas.upenn.edu>
Date: Wed, 17 Dec 2025 15:50:30 -0500
Subject: [PATCH] Update poppystructure.rdf

---
 data/ontology/poppystructure.rdf | 98 ++++++++++++++++++++++++++++++++
 1 file changed, 98 insertions(+)

diff --git a/data/ontology/poppystructure.rdf b/data/ontology/poppystructure.rdf
index 6159fa7..38a81e1 100644
--- a/data/ontology/poppystructure.rdf
+++ b/data/ontology/poppystructure.rdf
@@ -21,9 +21,32 @@
     
 
 
+    <!-- http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#diseaseTreatedBy -->
+
+    <owl:ObjectProperty rdf:about="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#diseaseTreatedBy">
+        <owl:inverseOf rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#treatsDisease"/>
+        <rdfs:domain rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#DiseaseConcept"/>
+        <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#ChemicalConcept"/>
+        <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#PlantConcept"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#geneTargetedBy -->
+
+    <owl:ObjectProperty rdf:about="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#geneTargetedBy">
+        <owl:inverseOf rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#targetsGene"/>
+        <rdfs:domain rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#Gene"/>
+        <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#ChemicalConcept"/>
+        <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#PlantConcept"/>
+    </owl:ObjectProperty>
+    
+
+
     <!-- http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#hasAdverseEffect -->
 
     <owl:ObjectProperty rdf:about="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#hasAdverseEffect">
+        <owl:inverseOf rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#isAdverseEffectFor"/>
         <rdfs:domain rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#ChemicalConcept"/>
         <rdfs:domain rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#PlantConcept"/>
         <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#AdverseEffect"/>
@@ -31,9 +54,20 @@
     
 
 
+    <!-- http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#hasBeenContributedTo -->
+
+    <owl:ObjectProperty rdf:about="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#hasBeenContributedTo">
+        <owl:inverseOf rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#isAssociatedWith"/>
+        <rdfs:domain rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#TherapeuticEffect"/>
+        <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#PlantConcept"/>
+    </owl:ObjectProperty>
+    
+
+
     <!-- http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#hasClinicalStudy -->
 
     <owl:ObjectProperty rdf:about="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#hasClinicalStudy">
+        <owl:inverseOf rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#isClinicalStudyFor"/>
         <rdfs:domain rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#ChemicalConcept"/>
         <rdfs:domain rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#PlantConcept"/>
         <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#ClinicalTrial"/>
@@ -45,6 +79,7 @@
     <!-- http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#hasCompound -->
 
     <owl:ObjectProperty rdf:about="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#hasCompound">
+        <owl:inverseOf rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#isDerivedFrom"/>
         <rdfs:domain rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#Plant"/>
         <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#ChemicalConcept"/>
         <rdfs:comment>Links a plant to its active compound(s)</rdfs:comment>
@@ -52,9 +87,21 @@
     
 
 
+    <!-- http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#hasInteractionsWith -->
+
+    <owl:ObjectProperty rdf:about="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#hasInteractionsWith">
+        <owl:inverseOf rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#interactsWith"/>
+        <rdfs:domain rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#ChemicalConcept"/>
+        <rdfs:domain rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#TherapeuticEffect"/>
+        <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#ChemicalConcept"/>
+    </owl:ObjectProperty>
+    
+
+
     <!-- http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#hasPaper -->
 
     <owl:ObjectProperty rdf:about="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#hasPaper">
+        <owl:inverseOf rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#isPaperFor"/>
         <rdfs:domain rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#ChemicalConcept"/>
         <rdfs:domain rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#PlantConcept"/>
         <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#ScientificPaper"/>
@@ -65,6 +112,7 @@
     <!-- http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#hasTherapeuticEffect -->
 
     <owl:ObjectProperty rdf:about="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#hasTherapeuticEffect">
+        <owl:inverseOf rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#therapeuticDueTo"/>
         <rdfs:domain rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#ChemicalConcept"/>
         <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#TherapeuticConcept"/>
     </owl:ObjectProperty>
@@ -82,6 +130,16 @@
     
 
 
+    <!-- http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#isAdverseEffectFor -->
+
+    <owl:ObjectProperty rdf:about="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#isAdverseEffectFor">
+        <rdfs:domain rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#AdverseEffect"/>
+        <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#ChemicalConcept"/>
+        <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#PlantConcept"/>
+    </owl:ObjectProperty>
+    
+
+
     <!-- http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#isAssociatedWith -->
 
     <owl:ObjectProperty rdf:about="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#isAssociatedWith">
@@ -92,6 +150,16 @@
     
 
 
+    <!-- http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#isClinicalStudyFor -->
+
+    <owl:ObjectProperty rdf:about="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#isClinicalStudyFor">
+        <rdfs:domain rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#ClinicalTrial"/>
+        <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#ChemicalConcept"/>
+        <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#PlantConcept"/>
+    </owl:ObjectProperty>
+    
+
+
     <!-- http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#isDerivedFrom -->
 
     <owl:ObjectProperty rdf:about="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#isDerivedFrom">
@@ -102,6 +170,27 @@
     
 
 
+    <!-- http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#isPaperFor -->
+
+    <owl:ObjectProperty rdf:about="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#isPaperFor">
+        <rdfs:domain rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#ScientificPaper"/>
+        <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#ChemicalConcept"/>
+        <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#PlantConcept"/>
+    </owl:ObjectProperty>
+    
+
+
+    <!-- http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#pathwayTargetedBy -->
+
+    <owl:ObjectProperty rdf:about="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#pathwayTargetedBy">
+        <owl:inverseOf rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#targetsPathway"/>
+        <rdfs:domain rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#Pathway"/>
+        <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#ChemicalConcept"/>
+        <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#PlantConcept"/>
+    </owl:ObjectProperty>
+    
+
+
     <!-- http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#targetsGene -->
 
     <owl:ObjectProperty rdf:about="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#targetsGene">
@@ -123,6 +212,15 @@
     
 
 
+    <!-- http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#therapeuticDueTo -->
+
+    <owl:ObjectProperty rdf:about="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#therapeuticDueTo">
+        <rdfs:domain rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#TherapeuticConcept"/>
+        <rdfs:range rdf:resource="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#ChemicalConcept"/>
+    </owl:ObjectProperty>
+    
+
+
     <!-- http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#treatsDisease -->
 
     <owl:ObjectProperty rdf:about="http://www.semanticweb.org/orestah/ontologies/2024/9/phytotherapies#treatsDisease">