Fix PR #98 issues from code review

- Remove internal/ directory with misleading CLAUDE.md files
- Remove .serena/ IDE configuration from version control
- Add .serena/ and internal/ to .gitignore
- Fix GitHub Actions workflow: add mkdocs-material dependency
- Fix typos in docs/index.md (resproschema -> reproschema)
- Fix incorrect pre-commit command in installation docs
- Fix variable name mismatch in redcap2reproschema.md example

Author: yibeichan

.github/workflows/deploy_mkdocs.yml

@@ -21,7 +21,7 @@ jobs:
 
       - name: Install dependencies
         run: |
-          pip install mkdocs
+          pip install mkdocs mkdocs-material
 
       - name: Deploy docs
         run: |

.gitignore

@@ -134,3 +134,9 @@ dmypy.json
 
 # Pycharm
 .idea/
+
+# Serena IDE configuration
+.serena/
+
+# Internal documentation
+internal/

.serena/project.yml

@@ -9,7 +9,7 @@ reproschema requires Python 3.10+
         index.md  # The documentation homepage.
         installation.md #A tutorial for installation.
         cli_usage.md #Notes on CLI usage
-        reproschema2redcap.md #How to convert from resproschema to redcap
-        redcap2reproschema.md #How to convert from redcap to reproscehma
+        reproschema2redcap.md #How to convert from reproschema to redcap
+        redcap2reproschema.md #How to convert from redcap to reproschema
         output2redcap.md #How to convert the output into redcap
         reproschema2fhir.md #How to convert the reproschema into an FHIR Questionnaire Resource

docs/index.md

@@ -18,7 +18,7 @@ pip install -e .
 #### Style
 This repo uses pre-commit to check styling.
 - Install pre-commit with pip: `pip install pre-commit`
-- In order to use it with the repository, you have to run `run pre-commit install` in the root directory the first time you use it.
+- In order to use it with the repository, you have to run `pre-commit install` in the root directory the first time you use it.
 
 When pre-commit is used, you may have to run git commit twice,
 since pre-commit may make additional changes to your code for styling and will

docs/installation.md

@@ -41,5 +41,5 @@ csv_path = "path-to/your_redcap_data_dic.csv"
 yaml_path = "path-to/your_redcap2rs.yaml"
 output_path = "path-to/directory_you_want_to_save_output"
 
-redcap2reproschema(csv_file, yaml_file, output_path)
+redcap2reproschema(csv_path, yaml_path, output_path)
 ```