fix: paths

Author: tristan-f-r

test/algorithms/AllPairs/test_ap.py

@@ -12,7 +12,7 @@
 # like setting hash length behaviors, container registries, etc.
 config.init_from_file("config/config.yaml")
 
-TEST_DIR = Path('test/AllPairs/')
+TEST_DIR = Path('test/algorithms/AllPairs/')
 OUT_DIR = TEST_DIR / 'output'
 EXPECTED_DIR = TEST_DIR / 'expected'
 

test/algorithms/BowTieBuilder/test_btb.py

@@ -10,11 +10,11 @@
 
 # TODO consider refactoring to simplify the import
 # Modify the path because of the - in the directory
-SPRAS_ROOT = Path(__file__).parent.parent.parent.absolute()
+SPRAS_ROOT = Path(__file__).parent.parent.parent.parent.absolute()
 sys.path.append(str(Path(SPRAS_ROOT, 'docker-wrappers', 'BowTieBuilder')))
 from spras.btb import BowTieBuilder as BTB
 
-TEST_DIR = Path('test', 'BowTieBuilder/')
+TEST_DIR = Path('test', 'algorithms', 'BowTieBuilder/')
 OUT_FILE_DEFAULT = Path(TEST_DIR, 'output', 'raw-pathway.txt')
 
 

test/algorithms/MEO/test_meo.py

@@ -8,7 +8,7 @@
 
 config.init_from_file("config/config.yaml")
 
-TEST_DIR = 'test/MEO/'
+TEST_DIR = 'test/algorithms/MEO/'
 OUT_FILE = TEST_DIR + 'output/edges.txt'
 
 

test/algorithms/MinCostFlow/test_mcf.py

@@ -8,7 +8,7 @@
 
 config.init_from_file("config/config.yaml")
 
-TEST_DIR = 'test/MinCostFlow/'
+TEST_DIR = 'test/algorithms/MinCostFlow/'
 OUT_FILE = TEST_DIR + 'output/mincostflow-output.txt'
 
 

test/algorithms/OmicsIntegrator1/test_oi1.py

@@ -8,7 +8,7 @@
 
 config.init_from_file("config/config.yaml")
 
-TEST_DIR = 'test/OmicsIntegrator1/'
+TEST_DIR = 'test/algorithms/OmicsIntegrator1/'
 OUT_FILE = TEST_DIR+'output/test_optimalForest.sif'
 
 

test/algorithms/OmicsIntegrator2/test_oi2.py

@@ -8,7 +8,7 @@
 
 config.init_from_file("config/config.yaml")
 
-TEST_DIR = Path('test', 'OmicsIntegrator2')
+TEST_DIR = Path('test', 'algorithms', 'OmicsIntegrator2')
 OUT_FILE = TEST_DIR / 'output' / 'test.tsv'
 
 EDGE_FILE = TEST_DIR / 'input' / 'simple' / 'oi2-edges.txt'

test/algorithms/RWR/test_RWR.py

@@ -9,7 +9,7 @@
 
 config.init_from_file("config/config.yaml")
 
-TEST_DIR = Path('test', 'RWR/')
+TEST_DIR = Path('test', 'algorithms', 'RWR/')
 OUT_FILE = Path(TEST_DIR, 'output', 'rwr-output.txt')
 
 

test/algorithms/ST_RWR/test_STRWR.py

@@ -9,7 +9,7 @@
 
 config.init_from_file("config/config.yaml")
 
-TEST_DIR = Path('test', 'ST_RWR')
+TEST_DIR = Path('test', 'algorithms', 'ST_RWR')
 OUT_FILE = Path(TEST_DIR, 'output', 'strwr-output.txt')
 EXPECTED_OUTPUT = Path(TEST_DIR, 'expected_output', 'strwr-output.txt')