das_tool for handling avamb multi-bin contigs?

[aistBMRG]

Hi,

Small question. Avamb assigns contigs to multiple bins, and you resolved this using checkm2 and removing contigs. Would a tool such as das_tool be helpful here, since this is designed to consolidate the output of multiple binners? Do you have any insights here?

Thanks,

Dieter.

[jakobnissen]

Hm, I can't remember if we've run comparisons between AVAMB and DAS Tool run on the individual binners of AVAMB. I feel like we must have. Pinging @Paupiera, who may remember.

[aistBMRG]

Thanks! Another useful tool may be binette (https://github.com/genotoul-bioinfo/Binette), which seems to be a faster version of metaWRAP but I did not explore its performance yet.