Updates jupyter notebook

Author: DrPaulSharp

RATapi/examples/convert_rascal_project/convert_rascal.ipynb

@@ -6,7 +6,7 @@
    "source": [
     "### RasCAL-1 to RAT\n",
     "\n",
-    "RasCAL-1 (R1) project structs can be converted to RAT Project classes, and vice versa. This is done via the functions `r1_to_project_class` and `project_class_to_r1`.\n",
+    "RasCAL-1 (R1) project structs can be converted to RAT Projects, and vice versa. This is done via the functions `r1_to_project` and `project_to_r1`.\n",
     "\n",
     "Converting from R1 to a `Project` is very simple. We use the example R1 project in the file `R1monolayerVolumeModel.mat`, which is a project for analysing a monolayer of DSPC with various deuterations (tail-deuterated, head-deuterated, fully deuterated, hydrogenated)"
    ]
@@ -15,7 +15,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "Simply give the file path to the function `r1_to_project_class`, and it returns a RAT `Project` that you can use exactly like any other."
+    "Simply give the file path to the function `r1_to_project`, and it returns a RAT `Project` that you can use exactly like any other."
    ]
   },
   {
@@ -24,9 +24,9 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from RATapi.utils.convert import r1_to_project_class\n",
+    "from RATapi.utils.convert import r1_to_project\n",
     "\n",
-    "project = r1_to_project_class(\"R1monolayerVolumeModel.mat\")\n",
+    "project = r1_to_project(\"R1monolayerVolumeModel.mat\")\n",
     "print(project)"
    ]
   },
@@ -108,7 +108,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "`project_class_to_r1` takes parameters `project` and `filename`, which are the `Project` object and filename for the produced .mat file respectively. This .mat file can then be loaded into RasCAL-1.\n",
+    "`project_to_r1` takes parameters `project` and `filename`, which are the `Project` object and filename for the produced .mat file respectively. This .mat file can then be loaded into RasCAL-1.\n",
     "\n",
     "Alternatively, if one sets `return_struct=True`, the struct is returned as a Python dictionary instead of being saved.\n",
     "\n",
@@ -121,14 +121,14 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from RATapi.utils.convert import project_class_to_r1\n",
+    "from RATapi.utils.convert import project_to_r1\n",
     "from pprint import pp  # for printing the struct\n",
     "\n",
     "# save to a file called lipid_bilayer.mat\n",
-    "project_class_to_r1(lipid_bilayer_project, filename=\"lipid_bilayer.mat\")\n",
+    "project_to_r1(lipid_bilayer_project, filename=\"lipid_bilayer.mat\")\n",
     "\n",
     "# return as a Python dictionary\n",
-    "struct = project_class_to_r1(lipid_bilayer_project, return_struct=True)\n",
+    "struct = project_to_r1(lipid_bilayer_project, return_struct=True)\n",
     "pp(struct)"
    ]
   }