DESCRIPTION

Package: PathwayEmbed
Title: Tools for Pathway-Level Embedding and Visualization in Single-Cell Data
Version: 0.0.0.9000
Authors@R: 
    person("Yaqing", "Huang", email = "yaqing.huang@yale.edu", role = c("aut", "cre"))
Description: Provides tools for analyzing and visualizing pathway-level activity 
    in single-cell RNA-seq data. Includes functions for computing cell-wise pathway scores, 
    visualizing transduction states, calculating activation percentages, 
    and integrating pathway data with Seurat objects.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Depends: 
    R (>= 3.5)
Imports:
    readxl,
    RColorBrewer,
    ggplot2,
    cowplot,
    dplyr,
    matrixStats,
    viridis,
    stats,
    effsize,
    tidyverse,
    purrr
Suggests:
    Seurat,
    scales,
    rmarkdown,
    knitr,
    testthat (>= 3.0.0)
Config/testthat/edition: 3
LazyData: true
VignetteBuilder: knitr
URL: https://raredonlab.github.io/PathwayEmbed