NucleiMix/environment.yml at main · QuIIL/NucleiMix · GitHub

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name: nucleimix
channels:
  - defaults
dependencies:
  - _libgcc_mutex=0.1=main
  - _openmp_mutex=5.1=1_gnu
  - ca-certificates=2025.2.25=h06a4308_0
  - ld_impl_linux-64=2.40=h12ee557_0
  - libffi=3.4.4=h6a678d5_1
  - libgcc-ng=11.2.0=h1234567_1
  - libgomp=11.2.0=h1234567_1
  - libstdcxx-ng=11.2.0=h1234567_1
  - libxcb=1.17.0=h9b100fa_0
  - ncurses=6.4=h6a678d5_0
  - openssl=3.0.16=h5eee18b_0
  - pip=24.2=py38h06a4308_0
  - pthread-stubs=0.3=h0ce48e5_1
  - python=3.8.20=he870216_0
  - readline=8.2=h5eee18b_0
  - setuptools=75.1.0=py38h06a4308_0
  - sqlite=3.50.2=hb25bd0a_1
  - tk=8.6.14=h993c535_1
  - wheel=0.44.0=py38h06a4308_0
  - xorg-libx11=1.8.12=h9b100fa_1
  - xorg-libxau=1.0.12=h9b100fa_0
  - xorg-libxdmcp=1.1.5=h9b100fa_0
  - xorg-xorgproto=2024.1=h5eee18b_1
  - xz=5.6.4=h5eee18b_1
  - zlib=1.2.13=h5eee18b_1
  - pip:
      - albumentations==1.3.0
      - contourpy==1.1.1
      - cycler==0.12.1
      - fonttools==4.57.0
      - imageio==2.35.1
      - importlib-resources==6.4.5
      - joblib==1.4.2
      - kiwisolver==1.4.7
      - lazy-loader==0.4
      - matplotlib==3.7.1
      - networkx==3.1
      - numpy==1.24.3
      - opencv-python==4.6.0.66
      - opencv-python-headless==4.7.0.72
      - packaging==25.0
      - pandas==2.0.1
      - pillow==10.4.0
      - pyparsing==3.1.4
      - python-dateutil==2.9.0.post0
      - pytz==2025.2
      - pywavelets==1.4.1
      - pyyaml==6.0.2
      - qudida==0.0.4
      - scikit-image==0.21.0
      - scikit-learn==1.3.2
      - scipy==1.10.1
      - seaborn==0.13.0
      - six==1.17.0
      - threadpoolctl==3.5.0
      - tifffile==2023.7.10
      - torch==1.10.0
      - torchvision==0.11.1
      - typing-extensions==4.13.2
      - tzdata==2025.2
      - zipp==3.20.2
      - timm==0.5.4