add converted notebooks

Author: rflamary

docs/cache_nbrun

@@ -1 +1 @@
-{"plot_barycenter_1D.ipynb": "6fd8167f98816dc832fe0c58b1d5527b", "plot_otda_mapping.ipynb": "d335a15af828aaa3439a1c67570d79d6"}
+{"plot_otda_mapping_colors_images.ipynb": "4f0587a00a3c082799a75a0ed36e9ce1", "plot_optim_OTreg.ipynb": "71d3c106b3f395a6b1001078a6ca6f8d", "plot_barycenter_1D.ipynb": "6fd8167f98816dc832fe0c58b1d5527b", "plot_WDA.ipynb": "27f8de4c6d7db46497076523673eedfb", "plot_OT_L1_vs_L2.ipynb": "e15219bf651a7e39e7c5c3934069894c", "plot_otda_color_images.ipynb": "d047d635f4987c81072383241590e21f", "plot_otda_classes.ipynb": "44bb8cd93317b5d342cd62e26d9bbe60", "plot_otda_d2.ipynb": "8ac4fd2ff899df0858ce1e5fead37f33", "plot_otda_mapping.ipynb": "d335a15af828aaa3439a1c67570d79d6", "plot_compute_emd.ipynb": "bd95981189df6adcb113d9b360ead734", "plot_OT_1D.ipynb": "e44c83f6112388ae18657cb0ad76d0e9", "plot_OT_2D_samples.ipynb": "3f125714daa35ff3cfe5dae1f71265c4"}

docs/nb_run_conv

@@ -20,7 +20,7 @@ import os
 cache_file='cache_nbrun'
 
 path_doc='source/auto_examples/'
-path_nb='../../../notebooks/'
+path_nb='../notebooks/'
 
 def load_json(fname):
     try:
@@ -58,8 +58,9 @@ def to_update(fname,cache):
 def update(fname,cache):
 
     # jupyter nbconvert --to notebook --execute mynotebook.ipynb --output targte
-    print(' '.join(['jupyter','nbconvert','--to','notebook','--execute',path_doc+fname,'--output',path_nb+fname]))
-    subprocess.check_call(['jupyter','nbconvert','--to','notebook','--execute',path_doc+fname,'--output',path_nb+fname])
+    subprocess.check_call(['cp',path_doc+fname,path_nb])
+    print(' '.join(['jupyter','nbconvert','--to','notebook','--ExecutePreprocessor.timeout=600','--execute',path_nb+fname,'--inplace']))
+    subprocess.check_call(['jupyter','nbconvert','--to','notebook','--ExecutePreprocessor.timeout=600','--execute',path_nb+fname,'--inplace'])
     cache[fname]=md5(path_doc+fname)
 
 
@@ -74,11 +75,8 @@ for fname in lst_file:
     if to_update(fname,cache):
         print('Updating file: {}'.format(fname))
         update(fname,cache)
+        save_json(cache_file,cache)
 
 
 
 
-update(lst_file[0],cache)
-
-
-save_json(cache_file,cache)