[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/PyCQA/isort: 5.13.2 → 6.0.1](PyCQA/isort@5.13.2...6.0.1)
- [github.com/codespell-project/codespell: v2.3.0 → v2.4.1](codespell-project/codespell@v2.3.0...v2.4.1)
- [github.com/psf/black-pre-commit-mirror: 24.10.0 → 25.1.0](psf/black-pre-commit-mirror@24.10.0...25.1.0)
- [github.com/snakemake/snakefmt: v0.10.2 → v0.11.0](snakemake/snakefmt@v0.10.2...v0.11.0)

Author: pre-commit-ci[bot]

.pre-commit-config.yaml

@@ -14,7 +14,7 @@ repos:
 
   # Sort package imports alphabetically
 - repo: https://github.com/PyCQA/isort
-  rev: 5.13.2
+  rev: 6.0.1
   hooks:
   - id: isort
     args: ["--profile", "black", "--filter-files"]
@@ -27,7 +27,7 @@ repos:
 
   # Find common spelling mistakes in comments and docstrings
 - repo: https://github.com/codespell-project/codespell
-  rev: v2.3.0
+  rev: v2.4.1
   hooks:
   - id: codespell
     args: ['--ignore-regex="(\b[A-Z]+\b)"', '--ignore-words-list=fom,appartment,bage,ore,setis,tabacco,berfore,vor,pris'] # Ignore capital case words, e.g. country codes
@@ -50,7 +50,7 @@ repos:
 
   # Formatting with "black" coding style
 - repo: https://github.com/psf/black-pre-commit-mirror
-  rev: 24.10.0
+  rev: 25.1.0
   hooks:
       # Format Python files
   - id: black
@@ -73,7 +73,7 @@ repos:
 
   # Format Snakemake rule / workflow files
 - repo: https://github.com/snakemake/snakefmt
-  rev: v0.10.2
+  rev: v0.11.0
   hooks:
   - id: snakefmt