remove Liquid tracking from volume tracker, delete contamination tracker (#744)

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>

Author: rickwierenga

docs/user_guide/machine-agnostic-features/using-the-visualizer.ipynb

@@ -74,11 +74,7 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "Setting up the liquid handler.\n",
-      "Resource deck was assigned to the liquid handler.\n",
-      "Resource trash was assigned to the liquid handler.\n",
-      "Resource trash_core96 was assigned to the liquid handler.\n",
-      "Resource waste_block was assigned to the liquid handler.\n"
+      "Setting up the liquid handler.\n"
      ]
     }
    ],
@@ -168,15 +164,7 @@
    "execution_count": 8,
    "id": "140872be",
    "metadata": {},
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "Resource tip carrier was assigned to the liquid handler.\n"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "lh.deck.assign_child_resource(tip_car, rails=15)"
    ]
@@ -199,15 +187,7 @@
    "execution_count": 10,
    "id": "d618ec6a",
    "metadata": {},
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "Resource plate carrier was assigned to the liquid handler.\n"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "lh.deck.assign_child_resource(plt_car, rails=8)"
    ]
@@ -312,8 +292,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "plate_1_liquids = [[(None, 500)]]*96\n",
-    "plate_1.set_well_liquids(plate_1_liquids)"
+    "plate_1.set_well_volumes([500]*96)"
    ]
   },
   {
@@ -323,8 +302,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "plate_2_liquids = [[(None, 100)], [(None, 500)]]*(96//2)\n",
-    "plate_2.set_well_liquids(plate_2_liquids)"
+    "plate_2.set_well_volumes([100, 500]*(96//2))"
    ]
   },
   {
@@ -400,10 +378,10 @@
      "text": [
       "Picking up tips:\n",
       "pip#  resource             offset           tip type     max volume (µL)  fitting depth (mm)   tip length (mm)  filter    \n",
-      "  p0: tips_01_tipspot_0_0  0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n",
-      "  p1: tips_01_tipspot_1_1  0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n",
-      "  p2: tips_01_tipspot_2_2  0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n",
-      "  p3: tips_01_tipspot_3_3  0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n"
+      "  p0: tips_01_tipspot_A1   0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n",
+      "  p1: tips_01_tipspot_B2   0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n",
+      "  p2: tips_01_tipspot_C3   0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n",
+      "  p3: tips_01_tipspot_D4   0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n"
      ]
     }
    ],
@@ -423,10 +401,10 @@
      "text": [
       "Dropping tips:\n",
       "pip#  resource             offset           tip type     max volume (µL)  fitting depth (mm)   tip length (mm)  filter    \n",
-      "  p0: tips_01_tipspot_0_0  0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n",
-      "  p1: tips_01_tipspot_1_1  0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n",
-      "  p2: tips_01_tipspot_2_2  0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n",
-      "  p3: tips_01_tipspot_3_3  0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n"
+      "  p0: tips_01_tipspot_A1   0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n",
+      "  p1: tips_01_tipspot_B2   0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n",
+      "  p2: tips_01_tipspot_C3   0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n",
+      "  p3: tips_01_tipspot_D4   0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n"
      ]
     }
    ],
@@ -454,7 +432,7 @@
      "text": [
       "Picking up tips:\n",
       "pip#  resource             offset           tip type     max volume (µL)  fitting depth (mm)   tip length (mm)  filter    \n",
-      "  p0: tips_01_tipspot_0_0  0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n"
+      "  p0: tips_01_tipspot_A1   0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n"
      ]
     }
    ],
@@ -474,7 +452,7 @@
      "text": [
       "Aspirating:\n",
       "pip#  vol(ul)  resource             offset           flow rate  blowout    lld_z       \n",
-      "  p0: 200.0    plate_01_well_1_0    0,0,0            None       None       None       \n"
+      "  p0: 200.0    plate_01_well_A2     0,0,0            None       None       None       \n"
      ]
     }
    ],
@@ -494,7 +472,7 @@
      "text": [
       "Dispensing:\n",
       "pip#  vol(ul)  resource             offset           flow rate  blowout    lld_z       \n",
-      "  p0: 200.0    plate_02_well_0_0    0,0,0            None       None       None       \n"
+      "  p0: 200.0    plate_02_well_A1     0,0,0            None       None       None       \n"
      ]
     }
    ],
@@ -514,7 +492,7 @@
      "text": [
       "Dropping tips:\n",
       "pip#  resource             offset           tip type     max volume (µL)  fitting depth (mm)   tip length (mm)  filter    \n",
-      "  p0: tips_01_tipspot_0_0  0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n"
+      "  p0: tips_01_tipspot_A1   0,0,0            HamiltonTip  1065             8                    95.1             Yes       \n"
      ]
     }
    ],
@@ -656,7 +634,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.13.7"
+   "version": "3.9.23"
   },
   "toc": {
    "base_numbering": 1,