NuClick needed to adapt the latest changes to AsDiscreted transform input arguments and other minor path fixes in SSL (#924)

Signed-off-by: Vishwesh Nath <vnath@nvidia.com>

Signed-off-by: Vishwesh Nath <vnath@nvidia.com>
Co-authored-by: Vishwesh Nath <vnath@nvidia.com>

Author: finalelement

nuclick/nuclick_training_notebook.ipynb

@@ -2278,7 +2278,7 @@
     "\n",
     "train_post_transforms = Compose([\n",
     "    Activationsd(keys=\"pred\", sigmoid=True),\n",
-    "    AsDiscreted(keys=\"pred\", threshold_values=True, logit_thresh=0.5),\n",
+    "    AsDiscreted(keys=\"pred\", threshold=0.5),\n",
     "]\n",
     ")\n",
     "\n",
@@ -2507,9 +2507,9 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "nuclick_tutorial",
+   "display_name": "py38_monai_v1_tutorial_test",
    "language": "python",
-   "name": "nuclick_tutorial"
+   "name": "py38_monai_v1_tutorial_test"
   },
   "language_info": {
    "codemirror_mode": {

self_supervised_pretraining/ssl_script_train.py

@@ -27,9 +27,9 @@
 def main():
 
     #TODO Defining file paths & output directory path
-    json_Path = os.path.normpath('/scratch/data_2021/tcia_covid19/dataset_split_debug.json')
-    data_Root = os.path.normpath('/scratch/data_2021/tcia_covid19')
-    logdir_path = os.path.normpath('/home/vishwesh/monai_tutorial_testing/issue_467')
+    json_Path = os.path.normpath('/to/be/defined/by/user/')
+    data_Root = os.path.normpath('/to/be/defined/by/user/')
+    logdir_path = os.path.normpath('/to/be/defined/by/user/')
 
     if os.path.exists(logdir_path)==False:
         os.mkdir(logdir_path)