IndexError: too many indices for array

[Howyoudoonething]

Hello,

I ran into this error when running "python run.py -s 176 micrographs/"

Traceback (most recent call last):
File "run.py", line 49, in
apple.pick_particles()
File "/APPLE/APPLEpicker-python/apple/apple.py", line 177, in pick_particles
pool.map(partial_func, filenames)
File "/home/my/anaconda3/envs/applepicker/lib/python3.6/multiprocessing/pool.py", line 266, in map
return self._map_async(func, iterable, mapstar, chunksize).get()
File "/home/my/anaconda3/envs/applepicker/lib/python3.6/multiprocessing/pool.py", line 644, in get
raise self._value
IndexError: too many indices for array

Can you help look into this error?

Thanks,
Chen

[ayeltg]

Hi Chen,

Certainly, happy to help.

First, we currently have two repositories for our python code. The latest version is available as part of the aspire repository: https://github.com/ComputationalCryoEM/ASPIRE-Python
Is this the one that you are running?

Also, is the micrograph you are using publicly available?