From 654172ce0aac79f9cc18c54ee66216c13d524fcc Mon Sep 17 00:00:00 2001 From: Kyle Bittinger Date: Wed, 1 Apr 2026 16:18:40 -0400 Subject: [PATCH 01/17] Add data-raw to .Rbuildignore --- .Rbuildignore | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) diff --git a/.Rbuildignore b/.Rbuildignore index 7d897c0..a092039 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -1,5 +1,6 @@ -^renv$ -^renv\.lock$ -^\.github$ -^.*\.Rproj$ -^\.Rproj\.user$ +^renv$ +^renv\.lock$ +^\.github$ +^.*\.Rproj$ +^\.Rproj\.user$ +^data-raw$ From 532e9a3f83bac61011dc1352fa198c3fa5e261b8 Mon Sep 17 00:00:00 2001 From: Kyle Bittinger Date: Wed, 1 Apr 2026 16:19:15 -0400 Subject: [PATCH 02/17] Add CSV tables and script to generate synonyms table --- data-raw/extra_synonyms.csv | 2 + data-raw/lpsn_synonyms.csv | 6679 +++++++++++++++++++++++++++++++++++ data-raw/ncbi_synonyms.csv | 827 +++++ data-raw/taxon_synonyms.Rmd | 112 + 4 files changed, 7620 insertions(+) create mode 100644 data-raw/extra_synonyms.csv create mode 100644 data-raw/lpsn_synonyms.csv create mode 100644 data-raw/ncbi_synonyms.csv create mode 100644 data-raw/taxon_synonyms.Rmd diff --git a/data-raw/extra_synonyms.csv b/data-raw/extra_synonyms.csv new file mode 100644 index 0000000..0c04295 --- /dev/null +++ b/data-raw/extra_synonyms.csv @@ -0,0 +1,2 @@ +name,rank,correct_name +Firmicutes,phylum,Bacillota \ No newline at end of file diff --git a/data-raw/lpsn_synonyms.csv b/data-raw/lpsn_synonyms.csv new file mode 100644 index 0000000..309aa3f --- /dev/null +++ b/data-raw/lpsn_synonyms.csv @@ -0,0 +1,6679 @@ +name,rank,correct_name +Abiotrophia adiacens,species,Granulicatella adiacens +Abiotrophia balaenopterae,species,Granulicatella balaenopterae +Abiotrophia elegans,species,Granulicatella elegans +Absiella argi,species,Amedibacterium intestinale +Absiella,genus,Amedibacterium +Abyssivirga alkaniphila,species,Vallitalea guaymasensis +Abyssivirga,genus,Vallitalea +Acetivibrio cellulosolvens,species,Acetivibrio cellulolyticus +Acetivibrio multivorans,species,Youngiibacter multivorans +Acetobacter ascendens,species,Acetobacter pasteurianus +Acetobacter ascendens,species,Acetobacter pasteurianus +Acetobacter diazotrophicus,species,Gluconacetobacter diazotrophicus +Acetobacter europaeus,species,Komagataeibacter europaeus +Acetobacter hansenii,species,Komagataeibacter hansenii +Acetobacter intermedius,species,Komagataeibacter intermedius +Acetobacter liquefaciens,species,Gluconacetobacter liquefaciens +Acetobacter liquefaciens,species,Gluconacetobacter liquefaciens +Acetobacter methanolicus,species,Acidomonas methanolica +Acetobacter oboediens,species,Komagataeibacter oboediens +Acetobacter peroxydans,species,Acetobacter pasteurianus +Acetobacter persicus,species,Acetobacter persici +Acetobacter suratthanensis,species,Acetobacter suratthaniensis +Acetobacter xylinum,species,Komagataeibacter xylinus +Acetobacter xylinus,species,Komagataeibacter xylinus +Acetogenium kivui,species,Thermoanaerobacter kivui +Acetogenium,genus,Thermoanaerobacter +Acetomicrobium faecale,species,Caldicoprobacter faecalis +Acetomicrobium faecalis,species,Caldicoprobacter faecalis +Acholeplasma entomophilum,species,Mesoplasma entomophilum +Acholeplasma florum,species,Mesoplasma florum +Acholeplasma oculusi,species,Acholeplasma oculi +Acholeplasma seiffertii,species,Mesoplasma seiffertii +Achromobacter sediminum,species,Verticiella sediminum +Achromobacter spiritinus,species,Achromobacter marplatensis +Acidicaldus organivorus,species,Acidicaldus organivorans +Acidimangrovimonas indica,species,Allgaiera indica +Acidiphilium aminilyticum,species,Acidocella aminolytica +Acidiphilium aminolytica,species,Acidocella aminolytica +Acidiphilium facile,species,Acidocella facilis +Acidiphilium facilis,species,Acidocella facilis +Acidipila dinghuensis,species,Silvibacterium dinghuense +Acidisoma cellulosilytica,species,Acidisoma cellulosilyticum +Acidithiobacillus albertis,species,Acidithiobacillus albertensis +Acidithiobacillus concretivorus,species,Acidithiobacillus thiooxidans +Acidovorax antarcticus,species,Comamonas antarctica +Acinetobacter dijkshoorniae,species,Acinetobacter lactucae +Acinetobacter grimontii,species,Acinetobacter junii +Acinetobacter guangdongensis,species,Acinetobacter indicus +Acinetobacter oryzae,species,Acinetobacter johnsonii +Acinetobacter pakistanensis,species,Acinetobacter bohemicus +Acinetobacter plantarum,species,Acinetobacter junii +Acinetobacter zhairhuonensis,species,Acinetobacter zhairuonensis +Actinacidiphila acididurans,species,Streptomyces acididurans +Actinacidiphila acidipaludis,species,Streptomyces acidipaludis +Actinacidiphila alni,species,Streptomyces alni +Actinacidiphila bryophytorum,species,Streptomyces bryophytorum +Actinacidiphila cocklensis,species,Streptomyces cocklensis +Actinacidiphila epipremni,species,Streptomyces epipremni +Actinacidiphila glaucinigra,species,Streptomyces glauciniger +Actinacidiphila guanduensis,species,Streptomyces guanduensis +Actinacidiphila oryziradicis,species,Streptomyces oryziradicis +Actinacidiphila paucisporea,species,Streptomyces paucisporeus +Actinacidiphila rubida,species,Streptomyces rubidus +Actinacidiphila soli,species,Streptomyces soli +Actinacidiphila yanglinensis,species,Streptomyces yanglinensis +Actinacidiphila yeochonensis,species,Streptomyces yeochonensis +Actinacidiphila,genus,Streptomyces +Actinarchaeum halophilum,species,Halocatena halophila +Actinarchaeum,genus,Halocatena +Actinaurispora siamensis,species,Plantactinospora siamensis +Actinaurispora,genus,Plantactinospora +Actinoalloteichus cyanogriseus,species,Actinoalloteichus caeruleus +Actinoarchaeum halophilum,species,Halocatena halophila +Actinoarchaeum,genus,Halocatena +Actinobacillus actinomycetemcomitans,species,Aggregatibacter actinomycetemcomitans +Actinobacillus muris,species,Muribacter muris +Actinobaculum schaalii,species,Actinotignum schaalii +Actinobaculum urinale,species,Actinotignum urinale +Actinobispora alaniniphila,species,Pseudonocardia alaniniphila +Actinobispora aurantiaca,species,Pseudonocardia aurantiaca +Actinobispora xinjiangensis,species,Pseudonocardia xinjiangensis +Actinobispora yunnanensis,species,Pseudonocardia yunnanensis +Actinobispora,genus,Pseudonocardia +Actinokineospora mzabensis,species,Actinokineospora spheciospongiae +Actinomadura africana,species,Nonomuraea africana +Actinomadura amylolytica,species,Thermomonospora amylolytica +Actinomadura aurantiaca,species,Actinocorallia aurantiaca +Actinomadura carminata,species,Nonomuraea roseoviolacea subsp. carminata +Actinomadura catellatispora,species,Actinomadura livida +Actinomadura cellulosilytica,species,Thermomonospora cellulosilytica +Actinomadura coeruleofusca,species,Saccharothrix coeruleofusca +Actinomadura coeruleoviolacea,species,Goodfellowiella coeruleoviolacea +Actinomadura echinospora,species,Thermomonospora echinospora +Actinomadura fastidiosa,species,Nonomuraea fastidiosa +Actinomadura ferruginea,species,Nonomuraea ferruginea +Actinomadura flava,species,Lentzea flava +Actinomadura flexuosa,species,Thermopolyspora flexuosa +Actinomadura glauciflava,species,Actinomadura luteofluorescens +Actinomadura glomerata,species,Actinocorallia glomerata +Actinomadura hankyongense,species,Actinomadura hankyongensis +Actinomadura helvata,species,Nonomuraea helvata +Actinomadura libanotica,species,Actinocorallia libanotica +Actinomadura longicatena,species,Actinocorallia longicatena +Actinomadura longispora,species,Saccharothrix longispora +Actinomadura malachitica,species,Actinomadura viridis +Actinomadura meyerii,species,Actinomadura meyerae +Actinomadura polychroma,species,Nonomuraea polychroma +Actinomadura pusilla,species,Nonomuraea pusilla +Actinomadura recticatena,species,Nonomuraea recticatena +Actinomadura roseola,species,Nonomuraea roseola +Actinomadura roseoviolacea,species,Nonomuraea roseoviolacea +Actinomadura rubra,species,Nonomuraea rubra +Actinomadura rubrobrunea,species,Actinomadura viridilutea +Actinomadura salmonea,species,Nonomuraea salmonea +Actinomadura spadix,species,Actinoallomurus spadix +Actinomadura spiralis,species,Nonomuraea spiralis +Actinomadura turkmeniaca,species,Nonomuraea turkmeniaca +Actinomadura umbrina,species,Thermomonospora umbrina +Actinomyces bernardiae,species,Trueperella bernardiae +Actinomyces canis,species,Schaalia canis +Actinomyces cardiffensis,species,Schaalia cardiffensis +Actinomyces coleocanis,species,Gleimia coleocanis +Actinomyces europaeus,species,Gleimia europaea +Actinomyces funkei,species,Schaalia funkei +Actinomyces georgiae,species,Schaalia georgiae +Actinomyces hominis,species,Gleimia hominis +Actinomyces hongkongensis,species,Pauljensenia hongkongensis +Actinomyces hordeovulneris,species,Buchananella hordeovulneris +Actinomyces humiferus,species,Cellulomonas humilata +Actinomyces humilatus,species,Cellulomonas humilata +Actinomyces hyovaginalis,species,Schaalia hyovaginalis +Actinomyces liubingyangii,species,Boudabousia liubingyangii +Actinomyces marimammalium,species,Boudabousia marimammalium +Actinomyces meyeri,species,Schaalia meyeri +Actinomyces naeslundi,species,Actinomyces naeslundii +Actinomyces nasicola,species,Bowdeniella nasicola +Actinomyces naturae,species,Schaalia naturae +Actinomyces neuii,species,Winkia neuii +Actinomyces odontolyticus,species,Schaalia odontolytica +Actinomyces pyogenes,species,Trueperella pyogenes +Actinomyces pyogenes,species,Trueperella pyogenes +Actinomyces radingae,species,Schaalia radingae +Actinomyces suimastitidis,species,Schaalia suimastitidis +Actinomyces suis,species,Actinobaculum suis +Actinomyces tangfeifanii,species,Boudabousia tangfeifanii +Actinomyces turicensis,species,Schaalia turicensis +Actinomyces vaccimaxillae,species,Schaalia vaccimaxillae +Actinophytocola corallina,species,Actinophytocola corallinus +Actinoplanes armeniacus,species,Streptomyces armeniacus +Actinoplanes bogoriensis,species,Actinoplanes bogorensis +Actinoplanes caeruleus,species,Couchioplanes caeruleus +Actinoplanes capillaceus,species,Actinoplanes campanulatus +Actinoplanes digitatis,species,Actinoplanes digitatus +Actinoplanes minutisporangius,species,Cryptosporangium minutisporangium +Actinopolyspora iraqiensis,species,Saccharomonospora iraqiensis +Actinopycnidium caeruleum,species,Streptomyces violaceoruber +Actinopycnidium,genus,Streptomyces +Actinospongiicola halichondriae,species,Actinospongicola halichondriae +Actinospongiicola,genus,Actinospongicola +Actinosporangium violaceum,species,Streptomyces paradoxus +Actinosporangium violaceus,species,Streptomyces paradoxus +Actinosporangium vitaminophilum,species,Wenjunlia vitaminophila +Actinosporangium,genus,Streptomyces +Actinotalea suaedae,species,Pseudactinotalea suaedae +Actirhodobacter atriluteus,species,Qipengyuania atrilutea +Actirhodobacter,genus,Qipengyuania +Aedoeadaptatus coxii,species,Peptoniphilus coxii +Aedoeadaptatus ivorii,species,Peptoniphilus ivorii +Aedoeadaptatus nemausensis,species,Peptoniphilus nemausensis +Aequorivita aquimaris,species,Aequorivita aquimaris +Aequorivita aquimaris,species,Aequorivita aquimaris +Aequorivita todarodis,species,Aequorivita todarodis +Aeribacillus alveayuensis,species,Bacillus alveayuensis +Aeribacillus kexueae,species,Bacillus kexueae +Aerobium aerolatum,species,Aquamicrobium aerolatum +Aerobium,genus,Aquamicrobium +Aerococcus sanguicola,species,Aerococcus sanguinicola +Aerolutibacter daejeonensis,species,Lysobacter daejeonensis +Aerolutibacter ruishenii,species,Lysobacter ruishenii +Aerolutibacter,genus,Lysobacter +Aeromonas aquariorum,species,Aeromonas dhakensis +Aeromonas culicicola,species,Aeromonas veronii +Aeromonas finlandiensis,species,Aeromonas finlandensis +Aeromonas punctata,species,Aeromonas caviae +Aeromonas sharmana,species,Pseudaeromonas sharmana +Aeromonas trota,species,Aeromonas enteropelogenes +Aestuarierythrobacter aquiaggeris,species,Altererythrobacter aquiaggeris +Aestuarierythrobacter confluentis,species,Pontixanthobacter confluentis +Aestuarierythrobacter sediminis,species,Pontixanthobacter sediminis +Aestuarierythrobacter,genus,Altererythrobacter +Aestuariibacter aggregatus,species,Marisediminitalea aggregata +Aestuariibacter litoralis,species,Aliiglaciecola litoralis +Aestuariicella albida,species,Pseudomaricurvus albidus +Aestuariicella hydrocarbonica,species,Pseudomaricurvus hydrocarbonicus +Aestuariicella,genus,Pseudomaricurvus +Aestuariicola saemankumensis,species,Lutimonas saemankumensis +Aestuariicola,genus,Lutimonas +Aestuariisphingobium litorale,species,Chakrabartia godavariana +Aestuariisphingobium,genus,Chakrabartia +Aestuariivita atlantica,species,Pseudaestuariivita atlantica +Aestuarium zhoushanense,species,Marivivens donghaensis +Aestuarium,genus,Marivivens +Agrilutibacter niabensis,species,Lysobacter niabensis +Agrilutibacter terrestris,species,Lysobacter terrestris +Agrilutibacter,genus,Lysobacter +Agrinovosphingobium ipomoeae,species,Novosphingobium ipomoeae +Agrinovosphingobium,genus,Novosphingobium +Agrobacterium atlanticum,species,Ruegeria atlantica +Agrobacterium deltaense,species,Agrobacterium deltae +Agrobacterium ferrugineum,species,Pseudorhodobacter ferrugineus +Agrobacterium gelatinovorum,species,Ruegeria gelatinovorans +Agrobacterium meteori,species,Ruegeria meteori +Agrobacterium rhizogenes,species,Rhizobium rhizogenes +Agrobacterium stellulatum,species,Stappia stellulata +Agrobacterium vitis,species,Allorhizobium vitis +Agromonas oligotrophica,species,Bradyrhizobium oligotrophicum +Agromonas,genus,Bradyrhizobium +Agromyces hippuratus,species,Agromyces fucosus subsp. hippuratus +Agromyces rhizospherae,species,Agromyces rhizosphaerae +Ahrensia kieliense,species,Ahrensia kielensis +Albidoferax ferrireducens,species,Albidiferax ferrireducens +Albidoferax,genus,Albidiferax +Albidovulum xiamenense,species,Meinhardsimonia xiamenensis +Alcaligenes aestus,species,Halomonas aquamarina +Alcaligenes aquamarinus,species,Halomonas aquamarina +Alcaligenes cupidus,species,Halomonas cupida +Alcaligenes defragrans,species,Castellaniella defragrans +Alcaligenes denitrificans,species,Achromobacter denitrificans +Alcaligenes eutrophus,species,Wautersia eutropha +Alcaligenes latus,species,Azohydromonas lata +Alcaligenes pacificus,species,Halomonas pacifica +Alcaligenes pacifus,species,Halomonas pacifica +Alcaligenes paradoxus,species,Variovorax paradoxus +Alcaligenes parafaecalis,species,Alcaligenes faecalis subsp. parafaecalis +Alcaligenes phenolicus,species,Alcaligenes faecalis subsp. phenolicus +Alcaligenes piechaudii,species,Achromobacter piechaudii +Alcaligenes ruhlandii,species,Achromobacter ruhlandii +Alcaligenes venustus,species,Halomonas venusta +Alcaligenes xylosoxidans,species,Achromobacter xylosoxidans +Alcalilimnicola halodurans,species,Alkalilimnicola halodurans +Alcalilimnicola,genus,Alkalilimnicola +Algibacter aestuarii,species,Hyunsoonleella aestuarii +Algibacter alginicilyticus,species,Pseudalgibacter alginicilyticus +Algibacter alginolytica,species,Pseudalgibacter alginicilyticus +Algibacter onchidii,species,Cognatitamlana onchidii +Algibacter wandonensis,species,Algibacter lectus +Algicoccus marinus,species,Orrella marina +Algicoccus,genus,Orrella +Algoriphagus aquimaris,species,Algoriphagus formosus +Aliarcobacter butzleri,species,Arcobacter butzleri +Aliarcobacter cibarius,species,Arcobacter cibarius +Aliarcobacter cryaerophilus,species,Arcobacter cryaerophilus +Aliarcobacter faecis,species,Arcobacter faecis +Aliarcobacter lanthieri,species,Arcobacter lanthieri +Aliarcobacter skirrowii,species,Arcobacter skirrowii +Aliarcobacter thereius,species,Arcobacter thereius +Aliarcobacter trophiarum,species,Arcobacter trophiarum +Aliarcobacter vitoriensis,species,Arcobacter vitoriensis +Aliarcobacter,genus,Arcobacter +Alicyclobacillus consociatus,species,Effusibacillus consociatus +Alicyclobacillus pohliae,species,Effusibacillus pohliae +Aliifodinibius halophilus,species,Fodinibius halophilus +Aliifodinibius roseus,species,Fodinibius roseus +Aliifodinibius salicampi,species,Fodinibius salicampi +Aliifodinibius saliphilus,species,Fodinibius saliphilus +Aliifodinibius sediminis,species,Fodinibius sediminis +Aliifodinibius,genus,Fodinibius +Aliigemmobacter aestuarii,species,Gemmobacter aestuarii +Aliigemmobacter,genus,Gemmobacter +Aliiruegeria haliotis,species,Pseudoruegeria haliotis +Aliiruegeria lutimaris,species,Pseudoruegeria lutimaris +Aliiruegeria sabulilitoris,species,Pseudoruegeria sabulilitoris +Aliiruegeria,genus,Pseudoruegeria +Aliitabrizicola rongguiensis,species,Tabrizicola rongguiensis +Aliitabrizicola,genus,Tabrizicola +Alirhizobium cellulosilyticum,species,Aliirhizobium cellulosilyticum +Alirhizobium smilacinae,species,Aliirhizobium smilacinae +Alirhizobium,genus,Aliirhizobium +Alkalibacterium olivapovliticus,species,Alkalibacterium olivapovliticum +Alkalibacterium olivoapovliticus,species,Alkalibacterium olivapovliticum +Alkalicoccobacillus plakortidis,species,Shouchella oshimensis +Alkalihalobacillus akibai,species,Halalkalibacter akibai +Alkalihalobacillus alkalinitrilicus,species,Alkalihalobacterium alkalinitrilicum +Alkalihalobacillus alkalisediminis,species,Halalkalibacter alkalisediminis +Alkalihalobacillus berkeleyi,species,Pseudalkalibacillus berkeleyi +Alkalihalobacillus bogoriensis,species,Alkalihalobacterium bogoriense +Alkalihalobacillus caeni,species,Pseudalkalibacillus caeni +Alkalihalobacillus clausii,species,Shouchella clausii +Alkalihalobacillus decolorationis,species,Pseudalkalibacillus decolorationis +Alkalihalobacillus gibsonii,species,Alkalicoccobacillus gibsonii +Alkalihalobacillus haemicellulosilyticus,species,Halalkalibacter hemicellulosilyticus +Alkalihalobacillus haemicentroti,species,Alkalihalobacillus hemicentroti +Alkalihalobacillus halodurans,species,Halalkalibacterium halodurans +Alkalihalobacillus hemicellulosilyticus,species,Halalkalibacter hemicellulosilyticus +Alkalihalobacillus hunanensis,species,Shouchella hunanensis +Alkalihalobacillus hwajinpoensis,species,Pseudalkalibacillus hwajinpoensis +Alkalihalobacillus kiskunsagensis,species,Halalkalibacter kiskunsagensis +Alkalihalobacillus krulwichiae,species,Halalkalibacter krulwichiae +Alkalihalobacillus lehensis,species,Shouchella oshimensis +Alkalihalobacillus ligniniphilus,species,Halalkalibacterium ligniniphilum +Alkalihalobacillus lindianensis,species,Alkalihalophilus lindianensis +Alkalihalobacillus lonarensis,species,Shouchella lonarensis +Alkalihalobacillus macyae,species,Pseudalkalibacillus hwajinpoensis +Alkalihalobacillus marmarensis,species,Alkalihalophilus marmarensis +Alkalihalobacillus miscanthi,species,Shouchella miscanthi +Alkalihalobacillus murimartini,species,Alkalicoccobacillus murimartini +Alkalihalobacillus nanhaiisediminis,species,Halalkalibacter nanhaiisediminis +Alkalihalobacillus oceani,species,Halalkalibacter oceani +Alkalihalobacillus okhensis,species,Halalkalibacter okhensis +Alkalihalobacillus okuhidensis,species,Halalkalibacterium halodurans +Alkalihalobacillus oshimensis,species,Shouchella oshimensis +Alkalihalobacillus patagoniensis,species,Shouchella patagoniensis +Alkalihalobacillus plakortidis,species,Shouchella oshimensis +Alkalihalobacillus pseudofirmus,species,Alkalihalophilus pseudofirmus +Alkalihalobacillus rhizosphaerae,species,Shouchella clausii +Alkalihalobacillus shacheensis,species,Shouchella shacheensis +Alkalihalobacillus urbisdiaboli,species,Halalkalibacter urbisdiaboli +Alkalihalobacillus wakoensis,species,Halalkalibacter wakoensis +Alkalihalobacillus xiaoxiensis,species,Shouchella xiaoxiensis +Alkalihalobacterium alkalicellulosilyticus,species,Alkalihalobacterium alkalicellulosilyticum +Alkalimicrobium pacificum,species,Mameliella alba +Alkalimicrobium,genus,Mameliella +Alkaliphilus peptidofermentans,species,Alkaliphilus peptidifermentans +Alkalithermobacter thermoalcaliphilum,species,Alkalithermobacter thermoalcaliphilus +Allisonella histaminiformans,species,Dialister histaminiformans +Allisonella,genus,Dialister +Alloactinosynnema album,species,Actinokineospora alba +Alloactinosynnema iranicum,species,Actinokineospora iranica +Alloactinosynnema,genus,Actinokineospora +Alloalcanivorax balearicus,species,Alcanivorax balearicus +Alloalcanivorax dieselolei,species,Alcanivorax dieselolei +Alloalcanivorax gelatiniphagus,species,Alcanivorax gelatiniphagus +Alloalcanivorax marinus,species,Alcanivorax marinus +Alloalcanivorax mobilis,species,Alcanivorax mobilis +Alloalcanivorax profundimaris,species,Alcanivorax profundimaris +Alloalcanivorax venustensis,species,Alcanivorax venustensis +Alloalcanivorax xenomutans,species,Alcanivorax xenomutans +Alloalcanivorax,genus,Alcanivorax +Allobrachymonas chironomi,species,Brachymonas chironomi +Allobrachymonas denitrificans,species,Brachymonas denitrificans +Allobrachymonas wangyanguii,species,Brachymonas wangyanguii +Allobrachymonas,genus,Brachymonas +Allolucifera butyrica,species,Lucifera butyrica +Allolucifera,genus,Lucifera +Allomesorhizobium alhagi,species,Mesorhizobium alhagi +Allomesorhizobium camelthorni,species,Mesorhizobium camelthorni +Allomesorhizobium,genus,Mesorhizobium +Allomonas enterica,species,Vibrio fluvialis +Allomonas,genus,Vibrio +Allomuricauda abyssi,species,Flagellimonas abyssi +Allomuricauda aequoris,species,Flagellimonas aequoris +Allomuricauda algicola,species,Flagellimonas algicola +Allomuricauda alvinocaridis,species,Flagellimonas alvinocaridis +Allomuricauda amoyensis,species,Flagellimonas amoyensis +Allomuricauda amphidinii,species,Flagellimonas amphidinii +Allomuricauda antarctica,species,Flagellimonas taeanensis +Allomuricauda aquimarina,species,Flagellimonas marinaquae +Allomuricauda aurantiaca,species,Flagellimonas maritima +Allomuricauda aurea,species,Flagellimonas aurea +Allomuricauda beolgyonensis,species,Flagellimonas beolgyonensis +Allomuricauda chongwuensis,species,Flagellimonas chongwuensis +Allomuricauda eckloniae,species,Flagellimonas eckloniae +Allomuricauda flava,species,Flagellimonas flava +Allomuricauda flavescens,species,Flagellimonas flavescens +Allomuricauda hadalis,species,Flagellimonas hadalis +Allomuricauda hymeniacidonis,species,Flagellimonas allohymeniacidonis +Allomuricauda indica,species,Flagellimonas indica +Allomuricauda iocasae,species,Flagellimonas iocasae +Allomuricauda koreensis,species,Flagellimonas aquimarina +Allomuricauda lutaonensis,species,Flagellimonas lutaonensis +Allomuricauda lutea,species,Croceivirga lutea +Allomuricauda lutimaris,species,Flagellimonas lutimaris +Allomuricauda marina,species,Flagellimonas marina +Allomuricauda maritima,species,Flagellimonas pelagia +Allomuricauda nanhaiensis,species,Flagellimonas nanhaiensis +Allomuricauda oceanensis,species,Flagellimonas oceanensis +Allomuricauda oceani,species,Flagellimonas oceani +Allomuricauda ochracea,species,Flagellimonas ochracea +Allomuricauda olearia,species,Flagellimonas olearia +Allomuricauda onchidii,species,Flagellimonas onchidii +Allomuricauda pacifica,species,Flagellimonas meridianipacifica +Allomuricauda parva,species,Flagellimonas pacifica +Allomuricauda profundi,species,Flagellimonas profundi +Allomuricauda ruestringensis,species,Flagellimonas ruestringensis +Allomuricauda sediminis,species,Flagellimonas sediminis +Allomuricauda spongiicola,species,Flagellimonas spongiicola +Allomuricauda taeanensis,species,Flagellimonas taeanensis +Allomuricauda zhangzhouensis,species,Flagellimonas zhangzhouensis +Allomuricauda,genus,Flagellimonas +Allopontixanthobacter confluentis,species,Pontixanthobacter confluentis +Allopontixanthobacter sediminis,species,Pontixanthobacter sediminis +Allopontixanthobacter,genus,Pontixanthobacter +Allopseudarcicella aquatilis,species,Aquirufa nivalisilvae +Allopseudarcicella,genus,Aquirufa +Allopusillimonas soli,species,Pusillimonas soli +Allorhizobium pseudoryzae,species,Affinirhizobium pseudoryzae +Allorhodopirellula heiligendammensis,species,Rhodopirellula heiligendammensis +Allorhodopirellula solitaria,species,Rhodopirellula solitaria +Allorhodopirellula,genus,Rhodopirellula +Allosphingosinicella deserti,species,Sphingomonas deserti +Allosphingosinicella flava,species,Sphingosinicella flava +Allosphingosinicella ginsenosidimutans,species,Sphingosinicella ginsenosidimutans +Allosphingosinicella humi,species,Sphingosinicella humi +Allotamlana fucoidanivorans,species,Tamlana fucoidanivorans +Allotamlana,genus,Tamlana +Alteracholeplasma parvum,species,Acholeplasma parvum +Alteracholeplasma,genus,Acholeplasma +Alteraquisediminimonas sediminicola,species,Aquisediminimonas sediminicola +Alteraquisediminimonas,genus,Aquisediminimonas +Altererythrobacter aerius,species,Tsuneonella aeria +Altererythrobacter aerophilus,species,Pelagerythrobacter aerophilus +Altererythrobacter aestiaquae,species,Pontixanthobacter aestiaquae +Altererythrobacter aestuarii,species,Alteraurantiacibacter aestuarii +Altererythrobacter amylolyticus,species,Tsuneonella amylolytica +Altererythrobacter aquaemixtae,species,Pontixanthobacter aquaemixtae +Altererythrobacter aquimixticola,species,Alteraurantiacibacter aquimixticola +Altererythrobacter atlanticus,species,Croceibacterium atlanticum +Altererythrobacter aurantiacus,species,Qipengyuania lutea +Altererythrobacter buctense,species,Alteraurantiacibacter buctensis +Altererythrobacter buctensis,species,Alteraurantiacibacter buctensis +Altererythrobacter confluentis,species,Pontixanthobacter confluentis +Altererythrobacter deserti,species,Tsuneonella deserti +Altererythrobacter dongtanensis,species,Tsuneonella dongtanensis +Altererythrobacter endophyticus,species,Altericroceibacterium endophyticum +Altererythrobacter estronivorus,species,Caenibius estronivorus +Altererythrobacter flavus,species,Tsuneonella flava +Altererythrobacter fulvus,species,Fulverythrobacter fulvus +Altererythrobacter gangjinensis,species,Pontixanthobacter gangjinensis +Altererythrobacter halimionae,species,Alteriqipengyuania halimionae +Altererythrobacter indicus,species,Altericroceibacterium indicum +Altererythrobacter lauratis,species,Alteraurantiacibacter lauratis +Altererythrobacter luteolus,species,Pontixanthobacter luteolus +Altererythrobacter lutipelagi,species,Parerythrobacter lutipelagi +Altererythrobacter mangrovi,species,Tsuneonella mangrovi +Altererythrobacter marensis,species,Pelagerythrobacter marensis +Altererythrobacter marinus,species,Pelagerythrobacter marinus +Altererythrobacter maritimus,species,Alteripontixanthobacter maritimus +Altererythrobacter muriae,species,Alteripontixanthobacter muriae +Altererythrobacter namhicola,species,Paraurantiacibacter namhicola +Altererythrobacter oceanensis,species,Qipengyuania oceanensis +Altererythrobacter palmitatis,species,Alteraurantiacibacter palmitatis +Altererythrobacter rhizovicinus,species,Pelagerythrobacter rhizovicinus +Altererythrobacter rigui,species,Tsuneonella rigui +Altererythrobacter salegens,species,Croceibacterium salegens +Altererythrobacter sediminis,species,Pontixanthobacter sediminis +Altererythrobacter segetis,species,Croceibacterium segetis +Altererythrobacter soli,species,Croceibacterium soli +Altererythrobacter spongiae,species,Altericroceibacterium spongiae +Altererythrobacter troitsensis,species,Tsuneonella troitsensis +Altererythrobacter xinjiangensis,species,Altericroceibacterium xinjiangense +Altererythrobacter xixiisoli,species,Croceibacterium xixiisoli +Alterinovosphingobium aerophilum,species,Novosphingobium aerophilum +Alterinovosphingobium bradum,species,Novosphingobium bradum +Alterinovosphingobium flavum,species,Novosphingobium flavum +Alterinovosphingobium humi,species,Novosphingobium humi +Alterinovosphingobium ovatum,species,Novosphingobium ovatum +Alterinovosphingobium piscinae,species,Novosphingobium piscinae +Alterinovosphingobium rosa,species,Novosphingobium rosa +Alterinovosphingobium umbonatum,species,Novosphingobium umbonatum +Alterinovosphingobium,genus,Novosphingobium +Alterirhizorhabdus profundi,species,Sphingomonas profundi +Alterirhizorhabdus solaris,species,Sphingomonas solaris +Alterirhizorhabdus,genus,Sphingomonas +Alterisphingobium fluviale,species,Sphingobium fluviale +Alterisphingobium jiangsuense,species,Sphingobium jiangsuense +Alterisphingobium subterraneum,species,Sphingobium subterraneum +Alterisphingobium,genus,Sphingobium +Alterisphingomonas asaccharolytica,species,Sphingomonas asaccharolytica +Alterisphingomonas mali,species,Sphingomonas mali +Alterisphingomonas panacisoli,species,Sphingomonas panacisoli +Alterisphingomonas pruni,species,Sphingomonas pruni +Alterisphingomonas radiodurans,species,Sphingomonas radiodurans +Alterisphingomonas,genus,Sphingomonas +Alterisphingopyxis lacunae,species,Sphingomonas lacunae +Alterisphingopyxis,genus,Sphingomonas +Alterisphingorhabdus lutea,species,Sphingorhabdus lutea +Alteristakelama azotifigens,species,Sphingomonas azotifigens +Alteristakelama canadensis,species,Sphingomonas canadensis +Alteristakelama gei,species,Sphingomonas gei +Alteristakelama hengshuiensis,species,Sphingomonas hengshuiensis +Alteristakelama koreensis,species,Sphingomonas koreensis +Alteristakelama kyeonggiensis,species,Sphingomonas kyeonggiensis +Alteristakelama leidyi,species,Sphingomonas leidyi +Alteristakelama naasensis,species,Sphingomonas naasensis +Alteristakelama pituitosa,species,Sphingomonas pituitosa +Alteristakelama pokkalii,species,Sphingomonas pokkalii +Alteristakelama psychrotolerans,species,Sphingomonas psychrotolerans +Alteristakelama soli,species,Sphingomonas soli +Alteristakelama suaedae,species,Sphingomonas suaedae +Alteristakelama trueperi,species,Sphingomonas trueperi +Alteristakelama turrisvirgatae,species,Sphingomonas turrisvirgatae +Alteristakelama xinjiangensis,species,Sphingomonas xinjiangensis +Alteristakelama,genus,Sphingomonas +Alteriyabuuchia sanxanigenens,species,Sphingomonas sanxanigenens +Alteriyabuuchia zeicaulis,species,Sphingomonas zeicaulis +Alteriyabuuchia,genus,Sphingomonas +Alteromonas addita,species,Alteromonas stellipolaris +Alteromonas atlantica,species,Pseudoalteromonas atlantica +Alteromonas aurantia,species,Pseudoalteromonas aurantia +Alteromonas carrageenovora,species,Pseudoalteromonas carrageenovora +Alteromonas citrea,species,Pseudoalteromonas citrea +Alteromonas colwelliana,species,Shewanella colwelliana +Alteromonas communis,species,Marinomonas communis +Alteromonas denitrificans,species,Pseudoalteromonas denitrificans +Alteromonas distincta,species,Pseudoalteromonas distincta +Alteromonas elyakovii,species,Pseudoalteromonas distincta +Alteromonas espejiana,species,Pseudoalteromonas espejiana +Alteromonas fuliginea,species,Pseudoalteromonas fuliginea +Alteromonas haloplanktis,species,Pseudoalteromonas haloplanktis +Alteromonas hanedai,species,Shewanella hanedai +Alteromonas indica,species,Alteromonas alterisediminis +Alteromonas luteoviolacea,species,Pseudoalteromonas luteoviolacea +Alteromonas putrefaciens,species,Shewanella putrefaciens +Alteromonas rubra,species,Pseudoalteromonas rubra +Alteromonas tetraodonis,species,Pseudoalteromonas tetraodonis +Alteromonas undina,species,Pseudoalteromonas undina +Alteromonas vaga,species,Oceanospirillum vagum +Aminobacter lissarensis,species,Aminobacter carboxidus +Aminocella lysinolytica,species,Aminicella lysinilytica +Aminocella,genus,Aminicella +Amoebobacter pedioformis,species,Thiolamprovum pedioforme +Amoebobacter pendens,species,Thiocapsa pendens +Amoebobacter purpureus,species,Lamprocystis purpurea +Amoebobacter roseus,species,Thiocapsa rosea +Amoebobacter,genus,Thiocapsa +Amorphoplanes auranticolor,species,Actinoplanes auranticolor +Amorphoplanes digitatis,species,Actinoplanes digitatus +Amorphoplanes digitatus,species,Actinoplanes digitatus +Amorphoplanes friuliensis,species,Actinoplanes friuliensis +Amorphoplanes nipponensis,species,Actinoplanes nipponensis +Amorphoplanes,genus,Actinoplanes +Amorphosporangium auranticolor,species,Actinoplanes auranticolor +Amorphosporangium globisporum,species,Actinoplanes globisporus +Amorphosporangium,genus,Actinoplanes +Amphibacillus fermentum,species,Pelagirhabdus fermentum +Amphritea ceti,species,Aliamphritea ceti +Amphritea spongicola,species,Aliamphritea spongicola +Ampullariella campanulata,species,Actinoplanes campanulatus +Ampullariella digitata,species,Actinoplanes digitatus +Ampullariella lobata,species,Actinoplanes lobatus +Ampullariella regularis,species,Actinoplanes regularis +Ampullariella,genus,Actinoplanes +Amycolata alni,species,Pseudonocardia alni +Amycolata autotrophica,species,Pseudonocardia autotrophica +Amycolata hydrocarbonoxydans,species,Pseudonocardia hydrocarbonoxydans +Amycolata saturnea,species,Pseudonocardia saturnea +Amycolata,genus,Pseudonocardia +Amycolatopsis albidoflavus,species,Amycolatopsis albidoflava +Amycolatopsis eurytherma,species,Amycolatopsis thermoflava +Amycolatopsis fastidiosa,species,Actinokineospora fastidiosa +Amycolatopsis halophila,species,Haloechinothrix halophila +Amycolatopsis japonicum,species,Amycolatopsis japonica +Amycolatopsis niigatensis,species,Amycolatopsis echigonensis +Amycolatopsis pithecelloba,species,Amycolatopsis pithecellobii +Amycolatopsis rugosa,species,Prauserella rugosa +Amycolatopsis salitolerans,species,Haloechinothrix salitolerans +Amycolicicoccus subflavus,species,Hoyosella subflava +Amycolicicoccus,genus,Hoyosella +Anaeroarcus burkinabensis,species,Anaeroarcus burkinensis +Anaerobacillus alkalilacustre,species,Anaerobacillus alkalilacustris +Anaerobacter polyendosporus,species,Clostridium polyendosporum +Anaerobacter,genus,Clostridium +Anaerobaculum hydrogeniformans,species,Acetomicrobium hydrogeniformans +Anaerobaculum mobile,species,Acetomicrobium mobile +Anaerobaculum thermoterrenum,species,Acetomicrobium thermoterrenum +Anaerobaculum,genus,Acetomicrobium +Anaerococcus degenerii,species,Anaerococcus degeneri +Anaerococcus kampingiae,species,Anaerococcus kampingae +Anaerococcus provenciensis,species,Anaerococcus provencensis +Anaerococcus rubiinfantis,species,Anaerococcus rubeinfantis +Anaeroglobus geminatus,species,Megasphaera geminata +Anaeroglobus,genus,Megasphaera +Anaerophilus nitritogenes,species,Anaerophilus nitritigenes +Anaerorhabdus furcosus,species,Anaerorhabdus furcosa +Anaerovibrio burkinabensis,species,Anaeroarcus burkinensis +Anaerovibrio glycerini,species,Anaerosinus glycerini +Anaerovibrio lipolytica,species,Anaerovibrio lipolyticus +Anaplasma phagocytophila,species,Anaplasma phagocytophilum +Ancylomarina euxinus,species,Ancylomarina euxina +Andreesenella formicoacetica,species,Andreesenella formicacetica +Aneurinibacillus aneurinolyticus,species,Aneurinibacillus aneurinilyticus +Angiococcus disciformis,species,Archangium disciforme 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amylolyticum +Anoxybacteroides geothermale,species,Anoxybacillus rupiensis +Anoxybacteroides geothermalis,species,Anoxybacillus rupiensis +Anoxybacteroides rupiense,species,Anoxybacillus rupiensis +Anoxybacteroides rupiensis,species,Anoxybacillus rupiensis +Anoxybacteroides voinovskiensis,species,Anoxybacteroides voinovskiense +Antiquaquibacter metalliresistens,species,Salinibacterium metalliresistens +Antiquaquibacter soli,species,Salinibacterium soli +Apilactobacillus kosoi,species,Apilactobacillus micheneri +Aporhodopirellula aestuarii,species,Rhodopirellula aestuarii +Aporhodopirellula rubra,species,Rhodopirellula rubra +Aporhodopirellula,genus,Rhodopirellula +Aquabacterium pictum,species,Rubrivivax pictus +Aquabacterium tepidiphilum,species,Caldimonas tepidiphila +Aquaspirillum anulus,species,Giesbergeria anulus +Aquaspirillum aquaticum,species,Comamonas aquatica +Aquaspirillum autotrophicum,species,Herbaspirillum autotrophicum +Aquaspirillum delicatum,species,Curvibacter delicatus +Aquaspirillum fasciculus,species,Prolinoborus fasciculus +Aquaspirillum giesbergeri,species,Giesbergeria giesbergeri +Aquaspirillum gracile,species,Hylemonella gracilis +Aquaspirillum itersonii,species,Novispirillum itersonii +Aquaspirillum magnetotacticum,species,Magnetospirillum magnetotacticum +Aquaspirillum metamorphum,species,Simplicispira metamorpha +Aquaspirillum peregrinum,species,Insolitispirillum peregrinum +Aquaspirillum psychrophilum,species,Simplicispira psychrophila +Aquaspirillum sinuosum,species,Giesbergeria sinuosa +Aquiflexum aquatile,species,Cognataquiflexum aquatile +Aquincola rivuli,species,Rubrivivax rivuli +Aquipseudomonas alcaligenes,species,Pseudomonas alcaligenes +Aquipseudomonas campi,species,Pseudomonas campi +Aquipseudomonas guryensis,species,Pseudomonas guryensis +Aquipseudomonas ullengensis,species,Pseudomonas ullengensis +Aquipseudomonas,genus,Pseudomonas +Aquisediminimonas godavariana,species,Chakrabartia godavariana +Arboriscoccus pini,species,Arboricoccus pini +Arboriscoccus,genus,Arboricoccus +Arcanobacterium abortisuis,species,Trueperella abortisuis +Arcanobacterium bernardiae,species,Trueperella bernardiae +Arcanobacterium bialowiezense,species,Trueperella bialowiezensis +Arcanobacterium bonasi,species,Trueperella bonasi +Arcanobacterium pyogenes,species,Trueperella pyogenes +Archangium lansinium,species,Archangium lansingense +Arcobacter haliotis,species,Arcobacter lekithochrous +Arcticiflavibacter luteus,species,Psychroserpens luteus +Arcticiflavibacter,genus,Psychroserpens +Arenitalea lutea,species,Algibacter luteus +Arenitalea,genus,Algibacter +Aromatoleum pumilum,species,Pseudazoarcus pumilus +Arthrobacter albidus,species,Sinomonas albida +Arthrobacter albus,species,Pseudoglutamicibacter albus +Arthrobacter antarcticus,species,Paeniglutamicibacter antarcticus +Arthrobacter ardleyensis,species,Glutamicibacter bergerei +Arthrobacter arilaitensis,species,Glutamicibacter arilaitensis +Arthrobacter atrocyaneus,species,Sinomonas atrocyanea +Arthrobacter aurescens,species,Paenarthrobacter aurescens +Arthrobacter bergerei,species,Glutamicibacter bergerei +Arthrobacter chlorophenolicus,species,Pseudarthrobacter chlorophenolicus +Arthrobacter creatinolyticus,species,Glutamicibacter creatinolyticus +Arthrobacter cryotolerans,species,Paeniglutamicibacter cryotolerans +Arthrobacter cumminsii,species,Pseudoglutamicibacter cumminsii +Arthrobacter defluvii,species,Pseudarthrobacter defluvii +Arthrobacter dokdonellae,species,Arthrobacter dokdonensis +Arthrobacter duodecadis,species,Phycicoccus duodecadis +Arthrobacter echigonensis,species,Sinomonas echigonensis +Arthrobacter enclensis,species,Pseudarthrobacter enclensis +Arthrobacter endophyticus,species,Glutamicibacter endophyticus +Arthrobacter equi,species,Pseudarthrobacter equi +Arthrobacter flavescens,species,Microbacterium flavescens +Arthrobacter gangotriensis,species,Paeniglutamicibacter gangotriensis +Arthrobacter globiforme,species,Arthrobacter globiformis +Arthrobacter histidinolovorans,species,Paenarthrobacter histidinolovorans +Arthrobacter ilicis,species,Paenarthrobacter ilicis +Arthrobacter kerguelensis,species,Paeniglutamicibacter kerguelensis +Arthrobacter mysorens,species,Glutamicibacter nicotianae +Arthrobacter nasiphocae,species,Falsarthrobacter nasiphocae +Arthrobacter nicotianae,species,Glutamicibacter nicotianae +Arthrobacter nicotinovorans,species,Paenarthrobacter nicotinovorans +Arthrobacter niigatensis,species,Pseudarthrobacter niigatensis +Arthrobacter nitroguajacolicus,species,Paenarthrobacter nitroguajacolicus +Arthrobacter oxydans,species,Pseudarthrobacter oxydans +Arthrobacter phenanthrenivorans,species,Pseudarthrobacter phenanthrenivorans +Arthrobacter picolinophilus,species,Rhodococcus erythropolis +Arthrobacter polychromogenes,species,Pseudarthrobacter polychromogenes +Arthrobacter protophormiae,species,Glutamicibacter protophormiae +Arthrobacter psychrophenolicus,species,Paeniglutamicibacter psychrophenolicus +Arthrobacter radiotolerans,species,Rubrobacter radiotolerans +Arthrobacter sanguinis,species,Haematomicrobium sanguinis +Arthrobacter scleromae,species,Pseudarthrobacter scleromae +Arthrobacter siccitolerans,species,Pseudarthrobacter siccitolerans +Arthrobacter siderocapsulatus,species,Pseudomonas putida +Arthrobacter simplex,species,Nocardioides simplex +Arthrobacter soli,species,Glutamicibacter soli +Arthrobacter sulfonivorans,species,Pseudarthrobacter sulfonivorans +Arthrobacter sulfureus,species,Paeniglutamicibacter sulfureus +Arthrobacter terregens,species,Microbacterium terregens +Arthrobacter tumescens,species,Terrabacter tumescens +Arthrobacter uratoxydans,species,Glutamicibacter uratoxydans +Arthrobacter ureafaciens,species,Paenarthrobacter ureafaciens +Arthrobacter variabilis,species,Corynebacterium variabile +Arthrobacter viscosus,species,Rhizobium viscosum +Asaccharobacter celatus,species,Adlercreutzia equolifaciens subsp. celata +Asaccharobacter,genus,Adlercreutzia +Asaia astilbes,species,Asaia astilbis +Asaia lannaensis,species,Asaia lannensis +Asinibacterium lactis,species,Sediminibacterium lactis +Asinibacterium,genus,Sediminibacterium +Asprobacillus argos,species,Asprobacillus argus +Aspromonas composti,species,Arenimonas composti +Aspromonas,genus,Arenimonas +Asticcacaulis biprosthecium,species,Asticcacaulis biprosthecius +Asticcacaulis biprosthecum,species,Asticcacaulis biprosthecius +Atlantibacter hermannii,species,Escherichia hermannii +Atlantibacter subterranea,species,Salmonella subterranea +Atlantibacter subterraneus,species,Salmonella subterranea +Atlantibacter,genus,Escherichia +Atopobium parvulum,species,Lancefieldella parvula +Atopobium rimae,species,Lancefieldella rimae +Atopobium vaginae,species,Fannyhessea vaginae +Atopostipes suicloacale,species,Atopostipes suicloacalis +Aurantimonas altamirensis,species,Aureimonas altamirensis +Aurantimonas frigidaquae,species,Aureimonas frigidaquae +Aurantimonas manganoxidans,species,Aurantimonas coralicida +Aurantimonas manganoxydans,species,Aurantimonas coralicida +Aurantimonas ureilytica,species,Aureimonas ureilytica +Aureimonas glaciistagni,species,Jiella glaciistagni +Aureimonas psammosilene,species,Aureimonas psammosilenae +Aureobacterium arabinogalactanolyticum,species,Microbacterium arabinogalactanolyticum +Aureobacterium barkeri,species,Microbacterium barkeri +Aureobacterium esteraromaticum,species,Microbacterium esteraromaticum +Aureobacterium flavescens,species,Microbacterium flavescens +Aureobacterium keratanolyticum,species,Microbacterium keratanolyticum +Aureobacterium liquefaciens,species,Microbacterium liquefaciens +Aureobacterium luteolum,species,Microbacterium luteolum +Aureobacterium resistens,species,Microbacterium resistens +Aureobacterium saperdae,species,Microbacterium saperdae +Aureobacterium schleiferi,species,Microbacterium schleiferi +Aureobacterium terrae,species,Microbacterium terrae +Aureobacterium terregens,species,Microbacterium terregens +Aureobacterium testaceum,species,Microbacterium testaceum +Aureobacterium trichothecenolyticum,species,Microbacterium trichothecenolyticum +Aureobacterium,genus,Microbacterium +Auricoccus indicus,species,Abyssicoccus albus +Auricoccus,genus,Abyssicoccus +Azoarcus anaerobius,species,Aromatoleum anaerobium +Azoarcus buckelii,species,Aromatoleum buckelii +Azoarcus communis,species,Parazoarcus communis +Azoarcus evansii,species,Aromatoleum evansii +Azoarcus halotolerans,species,Cognatazoarcus halotolerans +Azoarcus nasutitermitis,species,Pseudothauera nasutitermitis +Azoarcus pumilus,species,Pseudazoarcus pumilus +Azoarcus rhizosphaerae,species,Pseudothauera rhizosphaerae +Azoarcus tolulyticus,species,Aromatoleum tolulyticum +Azoarcus toluvorans,species,Aromatoleum toluvorans +Azomonotrichon macrocytogenes,species,Azomonas macrocytogenes +Azomonotrichon,genus,Azomonas +Azospirillum amazonense,species,Nitrospirillum amazonense +Azospirillum brasiliense,species,Azospirillum brasilense +Azospirillum irakense,species,Niveispirillum irakense +Azospirillum largomobile,species,Azospirillum largimobile +Azotobacter macrocytogenes,species,Azomonas macrocytogenes +Azotobacter paspali,species,Azorhizophilus paspali +Bacillus abyssalis,species,Priestia abyssalis +Bacillus acanthi,species,Peribacillus acanthi +Bacillus acidiceler,species,Gottfriedia acidiceleris +Bacillus acidicola,species,Heyndrickxia acidicola +Bacillus acidinfaciens,species,Siminovitchia acidinfaciens +Bacillus acidiproducens,species,Heyndrickxia acidiproducens +Bacillus aciditolerans,species,Ferdinandcohnia aciditolerans +Bacillus acidocaldarius,species,Alicyclobacillus acidocaldarius +Bacillus acidoterrestris,species,Alicyclobacillus acidoterrestris +Bacillus agaradhaerens,species,Salipaludibacillus agaradhaerens +Bacillus agri,species,Brevibacillus agri +Bacillus aidingensis,species,Salibacterium aidingense +Bacillus akibai,species,Halalkalibacter akibai +Bacillus alcalophilus,species,Alkalihalobacillus alcalophilus +Bacillus algicola,species,Alkalihalobacillus algicola +Bacillus alginolyticus,species,Paenibacillus alginolyticus +Bacillus alkalicellulosilyticus,species,Alkalihalobacterium alkalicellulosilyticum +Bacillus alkalicola,species,Evansella alkalicola +Bacillus alkalidiazotrophicus,species,Anaerobacillus alkalidiazotrophicus +Bacillus alkalilacus,species,Alkalihalobacillus alkalilacus +Bacillus alkalinitrilicus,species,Alkalihalobacterium alkalinitrilicum +Bacillus alkalisediminis,species,Halalkalibacter alkalisediminis +Bacillus alkalitelluris,species,Litchfieldia alkalitelluris +Bacillus alkalitolerans,species,Peribacillus alkalitolerans +Bacillus alvei,species,Paenibacillus alvei +Bacillus amylolyticus,species,Paenibacillus amylolyticus +Bacillus andreesenii,species,Anoxybacillus andreesenii +Bacillus aneurinilyticus,species,Aneurinibacillus aneurinilyticus +Bacillus aneurinolyticus,species,Aneurinibacillus aneurinilyticus +Bacillus antri,species,Ectobacillus antri +Bacillus aquimaris,species,Rossellomorea aquimaris +Bacillus arenosi,species,Viridibacillus arenosi +Bacillus arseniciselenatis,species,Anaerobacillus arseniciselenatis +Bacillus arsenicoselenatis,species,Anaerobacillus arseniciselenatis +Bacillus arsenicus,species,Fictibacillus arsenicus +Bacillus arvi,species,Viridibacillus arvi +Bacillus aryabhattai,species,Priestia aryabhattai +Bacillus asahii,species,Peribacillus asahii +Bacillus aurantiacus,species,Alteribacter aurantiacus +Bacillus axarquiensis,species,Bacillus halotolerans +Bacillus azotofixans,species,Paenibacillus azotofixans +Bacillus azotoformans,species,Schinkia azotoformans +Bacillus badius,species,Pseudobacillus badius +Bacillus barbaricus,species,Fictibacillus barbaricus +Bacillus bataviensis,species,Neobacillus bataviensis +Bacillus beijingensis,species,Bhargavaea beijingensis +Bacillus beringensis,species,Robertmurraya beringensis +Bacillus berkeleyi,species,Pseudalkalibacillus berkeleyi +Bacillus beveridgei,species,Salisediminibacterium beveridgei +Bacillus bogoriensis,species,Alkalihalobacterium bogoriense +Bacillus boroniphilus,species,Mesobacillus boroniphilus +Bacillus borstelensis,species,Brevibacillus borstelensis +Bacillus brevis,species,Brevibacillus brevis +Bacillus butanolivorans,species,Peribacillus butanolivorans +Bacillus caeni,species,Pseudalkalibacillus caeni +Bacillus camelliae,species,Heyndrickxia camelliae +Bacillus campisalis,species,Mesobacillus campisalis +Bacillus caseinilyticus,species,Evansella caseinilytica +Bacillus catenulatus,species,Sutcliffiella catenulata +Bacillus cavernae,species,Peribacillus cavernae +Bacillus cecembensis,species,Solibacillus cecembensis +Bacillus cellulosilyticus,species,Evansella cellulosilytica +Bacillus centrosporus,species,Brevibacillus centrosporus +Bacillus chagannorensis,species,Alkalicoccus chagannorensis +Bacillus chitinolyticus,species,Paenibacillus chitinolyticus +Bacillus chondroitinus,species,Paenibacillus chondroitinus +Bacillus choshinensis,species,Brevibacillus choshinensis +Bacillus cibi,species,Metabacillus indicus +Bacillus ciccensis,species,Cytobacillus solani +Bacillus clarkii,species,Evansella clarkii +Bacillus clausii,species,Shouchella clausii +Bacillus cohnii,species,Sutcliffiella cohnii +Bacillus composti,species,Siminovitchia composti +Bacillus crassostreae,species,Metabacillus crassostreae +Bacillus crescens,species,Robertmurraya crescens +Bacillus cucumis,species,Neobacillus cucumis +Bacillus curdlanolyticus,species,Paenibacillus curdlanolyticus +Bacillus cycloheptanicus,species,Alicyclobacillus cycloheptanicus +Bacillus daliensis,species,Alkalicoccus daliensis +Bacillus decolorationis,species,Pseudalkalibacillus decolorationis +Bacillus depressus,species,Cytobacillus depressus +Bacillus deserti,species,Peribacillus deserti +Bacillus dielmoensis,species,Neobacillus dielmonensis +Bacillus dielmonensis,species,Neobacillus dielmonensis +Bacillus dipsosauri,species,Gracilibacillus dipsosauri +Bacillus drentensis,species,Neobacillus drentensis +Bacillus edaphicus,species,Paenibacillus edaphicus +Bacillus ehimensis,species,Paenibacillus ehimensis +Bacillus eiseniae,species,Cytobacillus eiseniae +Bacillus encimensis,species,Pseudobacillus badius +Bacillus endolithicus,species,Metabacillus endolithicus +Bacillus endophyticus,species,Priestia endophytica +Bacillus endoradicis,species,Peribacillus endoradicis +Bacillus farraginis,species,Siminovitchia farraginis +Bacillus fastidiosus,species,Metabacillus fastidiosus +Bacillus fermenti,species,Mesobacillus fermenti +Bacillus filamentosus,species,Priestia filamentosa +Bacillus firmus,species,Cytobacillus firmus +Bacillus flexus,species,Priestia flexa +Bacillus foraminis,species,Mesobacillus foraminis +Bacillus fordii,species,Siminovitchia fordii +Bacillus formosensis,species,Cytobacillus formosensis +Bacillus formosus,species,Brevibacillus formosus +Bacillus fortis,species,Siminovitchia fortis +Bacillus frigoritolerans,species,Peribacillus frigoritolerans +Bacillus fumarioli,species,Neobacillus fumarioli +Bacillus funiculus,species,Ectobacillus funiculus +Bacillus fusiformis,species,Lysinibacillus fusiformis +Bacillus galactophilus,species,Brevibacillus agri +Bacillus galactosidilyticus,species,Lederbergia galactosidilytica +Bacillus galliciensis,species,Metabacillus galliciensis +Bacillus gelatini,species,Fictibacillus gelatini +Bacillus gibsonii,species,Alkalicoccobacillus gibsonii +Bacillus ginsengi,species,Bhargavaea ginsengi +Bacillus ginsengihumi,species,Heyndrickxia ginsengihumi +Bacillus ginsengisoli,species,Neobacillus ginsengisoli +Bacillus glennii,species,Peribacillus glennii +Bacillus globisporus,species,Sporosarcina globispora +Bacillus glucanolyticus,species,Paenibacillus glucanolyticus +Bacillus gordonae,species,Paenibacillus validus +Bacillus gossypii,species,Peribacillus gossypii +Bacillus gottheilii,species,Cytobacillus gottheilii +Bacillus graminis,species,Lederbergia graminis +Bacillus halmapalus,species,Sutcliffiella halmapala +Bacillus haloalkaliphilus,species,Alkalibacillus haloalkaliphilus +Bacillus halochares,species,Salibacterium halochares +Bacillus halodenitrificans,species,Virgibacillus halodenitrificans +Bacillus halodurans,species,Halalkalibacterium halodurans +Bacillus halophilus,species,Salimicrobium halophilum +Bacillus halosaccharovorans,species,Metabacillus halosaccharovorans +Bacillus hemicellulosilyticus,species,Halalkalibacter hemicellulosilyticus +Bacillus hemicentroti,species,Alkalihalobacillus hemicentroti +Bacillus herbersteinensis,species,Metabacillus herbersteinensis +Bacillus hisashii,species,Caldibacillus hisashii +Bacillus hominis,species,Bacillus mycoides +Bacillus horikoshii,species,Sutcliffiella horikoshii +Bacillus horneckiae,species,Cytobacillus horneckiae +Bacillus huizhouensis,species,Peribacillus huizhouensis +Bacillus humi,species,Ferdinandcohnia humi +Bacillus hunanensis,species,Shouchella hunanensis +Bacillus hwajinpoensis,species,Pseudalkalibacillus hwajinpoensis +Bacillus idriensis,species,Metabacillus idriensis +Bacillus indicus,species,Metabacillus indicus +Bacillus insolitus,species,Psychrobacillus insolitus +Bacillus invictae,species,Bacillus altitudinis +Bacillus iocasae,species,Metabacillus iocasae +Bacillus iranensis,species,Alteribacillus iranensis +Bacillus isronensis,species,Solibacillus isronensis +Bacillus jeddahensis,species,Neobacillus jeddahensis +Bacillus jeotgali,species,Mesobacillus jeotgali +Bacillus kaustophilus,species,Geobacillus kaustophilus +Bacillus kiskunsagensis,species,Halalkalibacter kiskunsagensis +Bacillus kobensis,species,Paenibacillus kobensis +Bacillus kochii,species,Cytobacillus kochii +Bacillus kokeshiiformis,species,Caldibacillus kokeshiiformis +Bacillus koreensis,species,Priestia koreensis +Bacillus korlensis,species,Robertmurraya korlensis +Bacillus kribbensis,species,Peribacillus kribbensis +Bacillus krulwichiae,species,Halalkalibacter krulwichiae +Bacillus lacisalsi,species,Alteribacter lacisalsi +Bacillus lacus,species,Metabacillus lacus +Bacillus laevolacticus,species,Sporolactobacillus laevolacticus +Bacillus larvae,species,Paenibacillus larvae +Bacillus laterosporus,species,Brevibacillus laterosporus +Bacillus lautus,species,Paenibacillus lautus +Bacillus lehensis,species,Shouchella oshimensis +Bacillus lentimorbus,species,Paenibacillus lentimorbus +Bacillus lentus,species,Lederbergia lenta +Bacillus ligniniphilus,species,Halalkalibacterium ligniniphilum +Bacillus lindianensis,species,Alkalihalophilus lindianensis +Bacillus litoralis,species,Metabacillus litoralis +Bacillus locisalis,species,Salisediminibacterium locisalis +Bacillus loiseleuriae,species,Peribacillus loiseleuriae +Bacillus lonarensis,species,Shouchella lonarensis +Bacillus luciferensis,species,Gottfriedia luciferensis +Bacillus luteolus,species,Cytobacillus luteolus +Bacillus luteus,species,Alkalicoccus luteus +Bacillus lycopersici,species,Caldibacillus lycopersici +Bacillus macauensis,species,Fictibacillus macauensis +Bacillus macerans,species,Paenibacillus macerans +Bacillus macquariensis,species,Paenibacillus macquariensis +Bacillus macyae,species,Pseudalkalibacillus hwajinpoensis +Bacillus malacitensis,species,Bacillus halotolerans +Bacillus malikii,species,Metabacillus malikii +Bacillus mangrovi,species,Metabacillus mangrovi +Bacillus mannanilyticus,species,Caldalkalibacillus mannanilyticus +Bacillus marinus,species,Jeotgalibacillus marinus +Bacillus marisflavi,species,Rossellomorea marisflavi +Bacillus marismortui,species,Virgibacillus marismortui +Bacillus maritimus,species,Mesobacillus maritimus +Bacillus marmarensis,species,Alkalihalophilus marmarensis +Bacillus massiliensis,species,Ureibacillus massiliensis +Bacillus massiliigabonensis,species,Cytobacillus massiliigabonensis +Bacillus massiliogabonensis,species,Cytobacillus massiliigabonensis +Bacillus massiliogorillae,species,Bacillus massiliigorillae +Bacillus massiliosenegalensis,species,Robertmurraya massiliosenegalensis +Bacillus megaterium,species,Priestia megaterium +Bacillus mesonae,species,Neobacillus mesonae +Bacillus methylotrophicus,species,Bacillus velezensis +Bacillus migulanus,species,Aneurinibacillus migulanus +Bacillus miscanthi,species,Shouchella miscanthi +Bacillus mucilaginosus,species,Paenibacillus mucilaginosus +Bacillus muralis,species,Peribacillus muralis +Bacillus murimartini,species,Alkalicoccobacillus murimartini +Bacillus naganoensis,species,Pullulanibacillus naganoensis +Bacillus nanhaiensis,species,Fictibacillus nanhaiensis +Bacillus nanhaiisediminis,species,Halalkalibacter nanhaiisediminis +Bacillus natronophilus,species,Alteribacter natronophilus +Bacillus neidei,species,Viridibacillus neidei +Bacillus neizhouensis,species,Salipaludibacillus neizhouensis +Bacillus niabensis,species,Metabacillus niabensis +Bacillus niacini,species,Neobacillus niacini +Bacillus notoginsengisoli,species,Neobacillus notoginsengisoli +Bacillus novalis,species,Neobacillus novalis +Bacillus oceani,species,Halalkalibacter oceani +Bacillus oceanisediminis,species,Cytobacillus oceanisediminis +Bacillus odysseyi,species,Lysinibacillus odysseyi +Bacillus okhensis,species,Halalkalibacter okhensis +Bacillus okuhidensis,species,Halalkalibacterium halodurans +Bacillus oleronius,species,Heyndrickxia oleronia +Bacillus onubensis,species,Ferdinandcohnia onubensis +Bacillus oryzaecorticis,species,Rossellomorea oryzaecorticis +Bacillus oryziterrae,species,Schinkia oryziterrae +Bacillus oshimensis,species,Shouchella oshimensis +Bacillus pabuli,species,Paenibacillus pabuli +Bacillus pakistanensis,species,Rossellomorea pakistanensis +Bacillus pallidus,species,Aeribacillus pallidus +Bacillus pallidus,species,Falsibacillus pallidus +Bacillus panacisoli,species,Lederbergia panacisoli +Bacillus panaciterrae,species,Ectobacillus panaciterrae +Bacillus pantothenticus,species,Virgibacillus pantothenticus +Bacillus parabrevis,species,Brevibacillus parabrevis +Bacillus paraflexus,species,Priestia paraflexa +Bacillus pasinlerensis,species,Caldibacillus pasinlerensis +Bacillus pasteuri,species,Sporosarcina pasteurii +Bacillus pasteurii,species,Sporosarcina pasteurii +Bacillus patagoniensis,species,Shouchella patagoniensis +Bacillus peoriae,species,Paenibacillus peoriae +Bacillus persepolensis,species,Alteribacillus persepolensis +Bacillus persicus,species,Mesobacillus persicus +Bacillus pervagus,species,Oikeobacillus pervagus +Bacillus piezotolerans,species,Neobacillus piezotolerans +Bacillus plakortidis,species,Shouchella oshimensis +Bacillus pocheonensis,species,Neobacillus pocheonensis +Bacillus polygoni,species,Evansella polygoni +Bacillus polymachus,species,Ectobacillus polymachus +Bacillus polymyxa,species,Paenibacillus polymyxa +Bacillus popilliae,species,Paenibacillus popilliae +Bacillus populi,species,Alteribacter populi +Bacillus praedii,species,Cytobacillus praedii +Bacillus pseudalcaliphilus,species,Alkalihalobacillus pseudalcaliphilus +Bacillus pseudalcalophilus,species,Alkalihalobacillus pseudalcaliphilus +Bacillus pseudofirmus,species,Alkalihalophilus pseudofirmus +Bacillus psychrodurans,species,Psychrobacillus psychrodurans +Bacillus psychrophilus,species,Sporosarcina psychrophila +Bacillus psychrosaccharolyticus,species,Peribacillus psychrosaccharolyticus +Bacillus psychrotolerans,species,Psychrobacillus psychrotolerans +Bacillus pulvifaciens,species,Paenibacillus larvae +Bacillus purgationiresistans,species,Cytobacillus purgationiresistens +Bacillus purgationiresistens,species,Cytobacillus purgationiresistens +Bacillus pycnus,species,Rummeliibacillus pycnus +Bacillus qingdaonensis,species,Salibacterium qingdaonense +Bacillus qingshengii,species,Priestia qingshengii +Bacillus reuszeri,species,Brevibacillus reuszeri +Bacillus rhizosphaerae,species,Shouchella clausii +Bacillus rigiliprofundi,species,Mesobacillus rigiliprofundi +Bacillus rigui,species,Fictibacillus rigui +Bacillus ruris,species,Lederbergia ruris +Bacillus saganii,species,Peribacillus saganii +Bacillus salarius,species,Salibacterium salarium +Bacillus salexigens,species,Virgibacillus salexigens +Bacillus salidurans,species,Ferdinandcohnia salidurans +Bacillus saliphilus,species,Alkalicoccus saliphilus +Bacillus salsus,species,Litchfieldia salsa +Bacillus schlegelii,species,Hydrogenibacillus schlegelii +Bacillus sediminis,species,Siminovitchia sediminis +Bacillus selenatarsenatis,species,Mesobacillus selenatarsenatis +Bacillus selenitireducens,species,Salisediminibacterium selenitireducens +Bacillus shacheensis,species,Shouchella shacheensis +Bacillus shackletonii,species,Heyndrickxia shackletonii +Bacillus silvestris,species,Solibacillus silvestris +Bacillus simplex,species,Peribacillus simplex +Bacillus siralis,species,Robertmurraya siralis +Bacillus solani,species,Cytobacillus solani +Bacillus soli,species,Neobacillus soli +Bacillus solisalsi,species,Fictibacillus solisalsi +Bacillus solisilvae,species,Gottfriedia solisilvae +Bacillus sphaericus,species,Lysinibacillus sphaericus +Bacillus sporothermodurans,species,Heyndrickxia sporothermodurans +Bacillus stamsii,species,Mesobacillus stamsii +Bacillus stearothermophilus,species,Geobacillus stearothermophilus +Bacillus suaedae,species,Bacillus suaedaesalsae +Bacillus subterraneus,species,Mesobacillus subterraneus +Bacillus taiwanensis,species,Priestia taiwanensis +Bacillus tamaricis,species,Evansella tamaricis +Bacillus tepidiphilus,species,Peribacillus tepidiphilus +Bacillus terrae,species,Siminovitchia terrae +Bacillus thermantarcticus,species,Parageobacillus thermantarcticus +Bacillus thermoaerophilus,species,Aneurinibacillus thermoaerophilus +Bacillus thermoantarcticus,species,Parageobacillus thermantarcticus +Bacillus thermocatenulatus,species,Geobacillus thermocatenulatus +Bacillus thermocloaceae,species,Bacillus thermocloacae +Bacillus thermocopriae,species,Neobacillus thermocopriae +Bacillus thermodenitrificans,species,Geobacillus thermodenitrificans +Bacillus thermoglucosidasius,species,Parageobacillus thermoglucosidasius +Bacillus thermolactis,species,Caldibacillus thermolactis +Bacillus thermoleovorans,species,Geobacillus thermoleovorans +Bacillus thermophilus,species,Siminovitchia thermophila +Bacillus thermoruber,species,Brevibacillus thermoruber +Bacillus thermosphaericus,species,Ureibacillus thermosphaericus +Bacillus thiaminolyticus,species,Paenibacillus thiaminolyticus +Bacillus thioparans,species,Mesobacillus thioparans +Bacillus thioparus,species,Mesobacillus thioparans +Bacillus trypoxylicola,species,Alkalihalobacillus trypoxylicola +Bacillus tusciae,species,Kyrpidia tusciae +Bacillus urbisdiaboli,species,Halalkalibacter urbisdiaboli +Bacillus urumqiensis,species,Alkalicoccus urumqiensis +Bacillus validus,species,Paenibacillus validus +Bacillus vedderi,species,Evansella vedderi +Bacillus vietnamensis,species,Rossellomorea vietnamensis +Bacillus vini,species,Heyndrickxia vini +Bacillus vireti,species,Neobacillus vireti +Bacillus vulcani,species,Geobacillus vulcani +Bacillus wakoensis,species,Halalkalibacter wakoensis +Bacillus weihenstephanensis,species,Bacillus mycoides +Bacillus wudalianchiensis,species,Pseudobacillus wudalianchiensis +Bacillus wuyishanensis,species,Lederbergia wuyishanensis +Bacillus xiaoxiensis,species,Shouchella xiaoxiensis +Bacillus zeae,species,Mesobacillus zeae +Bacillus zhanjiangensis,species,Sutcliffiella zhanjiangensis +Bacteriolyticum stolpii,species,Bacteriovorax stolpii +Bacteriolyticum,genus,Bacteriovorax +Bacterionema matruchotii,species,Corynebacterium matruchotii +Bacterionema,genus,Corynebacterium +Bacteriovorax litoralis,species,Halobacteriovorax litoralis +Bacteriovorax marinus,species,Halobacteriovorax marinus +Bacteriovorax starrii,species,Peredibacter starrii +Bacteroides amylophilus,species,Ruminobacter amylophilus +Bacteroides asaccharolyticus,species,Porphyromonas asaccharolytica +Bacteroides barnesiae,species,Phocaeicola barnesiae +Bacteroides bivius,species,Prevotella bivia +Bacteroides buccae,species,Prevotella buccae +Bacteroides buccalis,species,Prevotella buccalis +Bacteroides capillosus,species,Pseudoflavonifractor capillosus +Bacteroides capillus,species,Prevotella buccae +Bacteroides cellulosolvens,species,Pseudobacteroides cellulosolvens +Bacteroides chinchillae,species,Phocaeicola sartorii +Bacteroides coagulans,species,Ezakiella coagulans +Bacteroides coprocola,species,Phocaeicola coprocola +Bacteroides coprophilus,species,Phocaeicola coprophilus +Bacteroides corporis,species,Prevotella corporis +Bacteroides denticola,species,Prevotella denticola +Bacteroides disiens,species,Prevotella disiens +Bacteroides distasonis,species,Parabacteroides distasonis +Bacteroides dorei,species,Phocaeicola dorei +Bacteroides endodontalis,species,Porphyromonas endodontalis +Bacteroides forsythus,species,Tannerella forsythia +Bacteroides furcosus,species,Anaerorhabdus furcosa +Bacteroides gallinaceum,species,Bacteroides gallinaceus +Bacteroides gingivalis,species,Porphyromonas gingivalis +Bacteroides goldsteinii,species,Parabacteroides goldsteinii +Bacteroides gracilis,species,Campylobacter gracilis +Bacteroides heparinolyticus,species,Prevotella heparinolytica +Bacteroides hominis,species,Bacteroides fragilis +Bacteroides humanifaecis,species,Bacteroides parvus +Bacteroides hypermegas,species,Megamonas hypermegale +Bacteroides intermedius,species,Prevotella intermedia +Bacteroides koreensis,species,Bacteroides ovatus +Bacteroides kribbi,species,Bacteroides ovatus +Bacteroides levii,species,Porphyromonas levii +Bacteroides loescheii,species,Prevotella loescheii +Bacteroides macacae,species,Porphyromonas macacae +Bacteroides massiliensis,species,Phocaeicola massiliensis +Bacteroides melaninogenicus,species,Prevotella melaninogenica +Bacteroides merdae,species,Parabacteroides merdae +Bacteroides microfusus,species,Rikenella microfusus +Bacteroides multiacidus,species,Mitsuokella multacida +Bacteroides nodosus,species,Dichelobacter nodosus +Bacteroides ochraceus,species,Capnocytophaga ochracea +Bacteroides oralis,species,Prevotella oralis +Bacteroides oris,species,Prevotella oris +Bacteroides oulorum,species,Prevotella oulorum +Bacteroides paurosaccharolyticus,species,Phocaeicola paurosaccharolyticus +Bacteroides pentosaceus,species,Prevotella buccae +Bacteroides plebeius,species,Phocaeicola plebeius +Bacteroides pneumosintes,species,Dialister pneumosintes +Bacteroides praeacutus,species,Tissierella praeacuta +Bacteroides putredinis,species,Alistipes putredinis +Bacteroides rhinocerotis,species,Bacteroides parvus +Bacteroides ruminicola,species,Prevotella ruminicola +Bacteroides salanitronis,species,Phocaeicola salanitronis +Bacteroides salivosus,species,Porphyromonas macacae +Bacteroides salyersae,species,Bacteroides salyersiae +Bacteroides sartorii,species,Phocaeicola sartorii +Bacteroides splanchnicus,species,Odoribacter splanchnicus +Bacteroides succinogenes,species,Fibrobacter succinogenes +Bacteroides suis,species,Bacteroides pyogenes +Bacteroides tectum,species,Bacteroides pyogenes +Bacteroides tectus,species,Bacteroides pyogenes +Bacteroides termitidis,species,Sebaldella termitidis +Bacteroides ureolyticus,species,Campylobacter ureolyticus +Bacteroides veroralis,species,Prevotella veroralis +Bacteroides vulgatus,species,Phocaeicola vulgatus +Bacteroides xylanolyticus,species,Lacrimispora xylanisolvens +Bactoderma alba,species,Bactoderma album +Bactoderma rosea,species,Bactoderma roseum +Baileyella intestinalis,species,Allobaileyella intestinalis +Baileyella,genus,Allobaileyella +Balneimonas flocculans,species,Microvirga flocculans +Balneimonas,genus,Microvirga +Balneomonas flocculans,species,Microvirga flocculans +Balneomonas,genus,Microvirga +Bartonella florenciae,species,Bartonella florencae +Bartonella schoenbuchii,species,Bartonella schoenbuchensis +Bdellovibrio exovorus,species,Pseudobdellovibrio exovorus +Bdellovibrio starrii,species,Peredibacter starrii +Bdellovibrio stolpii,species,Bacteriovorax stolpii +Beijerinckia fluminensis,species,Agrobacterium radiobacter +Beneckea alginolytica,species,Vibrio alginolyticus +Beneckea campbellii,species,Vibrio campbellii +Beneckea gazogenes,species,Vibrio gazogenes +Beneckea harveyi,species,Vibrio harveyi +Beneckea natriegens,species,Vibrio natriegens +Beneckea nereida,species,Vibrio nereis +Beneckea nereis,species,Vibrio nereis +Beneckea nigrapulchritoda,species,Vibrio nigripulchritudo +Beneckea nigrapulchrituda,species,Vibrio nigripulchritudo +Beneckea nigripulchritudo,species,Vibrio nigripulchritudo +Beneckea parahaemolytica,species,Vibrio parahaemolyticus +Beneckea pelagia,species,Listonella pelagia +Beneckea splendida,species,Vibrio splendidus +Beneckea vulnifica,species,Vibrio vulnificus +Beneckea,genus,Vibrio +Bieblia veldkampii,species,Phaeovulum veldkampii +Bieblia vinaykumarii,species,Phaeovulum vinaykumarii +Bieblia,genus,Phaeovulum +Bifidobacterium coryneforme,species,Bifidobacterium indicum +Bifidobacterium denticolens,species,Parascardovia denticolens +Bifidobacterium faecale,species,Bifidobacterium adolescentis +Bifidobacterium infantis,species,Bifidobacterium longum subsp. infantis +Bifidobacterium inopinatum,species,Scardovia inopinata +Bifidobacterium kashiwanohense,species,Bifidobacterium catenulatum subsp. kashiwanohense +Bifidobacterium lactis,species,Bifidobacterium animalis subsp. lactis +Bifidobacterium saeculare,species,Bifidobacterium gallinarum subsp. saeculare +Bifidobacterium stercoris,species,Bifidobacterium adolescentis +Bifidobacterium suis,species,Bifidobacterium longum subsp. suis +Bifidobacterium thermophilium,species,Bifidobacterium thermophilum +Bifidobacterium tissierii,species,Bifidobacterium tissieri +Billgrantia antri,species,Halomonas antri +Billgrantia azerbaijanica,species,Halomonas azerbaijanica +Billgrantia bachuensis,species,Halomonas bachuensis +Billgrantia campisalis,species,Halomonas campisalis +Billgrantia desiderata,species,Halomonas desiderata +Billgrantia diversa,species,Halomonas diversa +Billgrantia endophytica,species,Halomonas endophytica +Billgrantia gudaonensis,species,Halomonas gudaonensis +Billgrantia kenyensis,species,Halomonas kenyensis +Billgrantia lactosivorans,species,Halomonas lactosivorans +Billgrantia montanilacus,species,Halomonas montanilacus +Billgrantia pellis,species,Halomonas pellis +Billgrantia saliphila,species,Halomonas saliphila +Billgrantia,genus,Halomonas +Bisbaumannia pacifica,species,Halomonas pacifica +Bisbaumannia salifodinae,species,Halomonas salifodinae +Bisbaumannia,genus,Halomonas +Blastobacter aggregatus,species,Rhizobium aggregatum +Blastobacter capsulatus,species,Pararhizobium capsulatum +Blastobacter denitrificans,species,Bradyrhizobium denitrificans +Blastobacter natatorius,species,Blastomonas natatoria +Blastococcus endophyticus,species,Trujillonella endophytica +Blastopirellula cremea,species,Bremerella cremea +Blautia coccoides,species,Blautia producta +Blautia glucerasei,species,Blautia glucerasea +Bogoriella caseilytica,species,Allobogoriella caseilytica +Bogoriella,genus,Allobogoriella +Borrelia baltazardi,species,Borrelia baltazardii +Borrelia duttoni,species,Borrelia duttonii +Borrelia nietonii,species,Borrelia hermsii +Borrelia turdae,species,Borrelia turdi +Borreliella afzelii,species,Borrelia afzelii +Borreliella americana,species,Borrelia americana +Borreliella bavariensis,species,Borrelia bavariensis +Borreliella bissettiae,species,Borrelia bissettiae +Borreliella burgdorferi,species,Borrelia burgdorferi +Borreliella californiensis,species,Borrelia californiensis +Borreliella carolinensis,species,Borrelia carolinensis +Borreliella garinii,species,Borrelia garinii +Borreliella japonica,species,Borrelia japonica +Borreliella kurtenbachii,species,Borrelia kurtenbachii +Borreliella lanei,species,Borrelia lanei +Borreliella mayonii,species,Borrelia mayonii +Borreliella sinica,species,Borrelia sinica +Borreliella spielmanii,species,Borrelia spielmanii +Borreliella valaisiana,species,Borrelia valaisiana +Borreliella yangtzensis,species,Borrelia yangtzensis +Borreliella,genus,Borrelia +Bosea beijingensis,species,Allobosea beijingensis +Bosea caraganae,species,Allobosea caraganae +Bosea eneae,species,Allobosea eneae +Bosea lathyri,species,Allobosea lathyri +Bosea lupini,species,Allobosea lupini +Bosea massiliensis,species,Allobosea massiliensis +Bosea minatitlanensis,species,Allobosea minatitlanensis +Bosea psychrotolerans,species,Allobosea psychrotolerans +Bosea robiniae,species,Allobosea robiniae +Bosea rubneri,species,Allobosea rubneri +Bosea spartocytisi,species,Allobosea spartocytisi +Bosea thiooxidans,species,Allobosea thiooxidans +Bosea vaviloviae,species,Allobosea vaviloviae +Bosea vestrisii,species,Allobosea vestrisii +Bosea,genus,Allobosea +Bowdenia nasicola,species,Bowdeniella nasicola +Bowdenia,genus,Bowdeniella +Bowmanella pacificus,species,Bowmanella pacifica +Bradyrhizobium centrosemae,species,Bradyrhizobium centrosematis +Bradyrhizobium prioritasuperba,species,Bradyrhizobium prioriisuperbiae +Bradyrhizobium roseus,species,Bradyrhizobium roseum +Branhamella catarrhalis,species,Moraxella catarrhalis +Branhamella,genus,Moraxella +Brenneria paradisiaca,species,Dickeya paradisiaca +Brenneria quercina,species,Lonsdalea quercina +Brenneria ulupoensis,species,Brenneria uluponensis +Brevibacterium acetylicum,species,Exiguobacterium acetylicum +Brevibacterium albidum,species,Curtobacterium citreum +Brevibacterium ammoniagenes,species,Corynebacterium ammoniagenes +Brevibacterium citreum,species,Curtobacterium citreum +Brevibacterium divaricatum,species,Corynebacterium glutamicum +Brevibacterium fermentans,species,Cellulosimicrobium cellulans +Brevibacterium frigoritolerans,species,Peribacillus frigoritolerans +Brevibacterium halotolerans,species,Bacillus halotolerans +Brevibacterium imperiale,species,Microbacterium imperiale +Brevibacterium incertum,species,Desemzia incerta +Brevibacterium liquefaciens,species,Glutamicibacter nicotianae +Brevibacterium lutescens,species,Brevibacterium luteolum +Brevibacterium luteum,species,Curtobacterium luteum +Brevibacterium lyticum,species,Cellulosimicrobium cellulans +Brevibacterium massiliense,species,Brevibacterium ravenspurgense +Brevibacterium metallicus,species,Brevibacterium metallicum +Brevibacterium oxydans,species,Microbacterium oxydans +Brevibacterium protophormiae,species,Glutamicibacter protophormiae +Brevibacterium pusillum,species,Curtobacterium pusillum +Brevibacterium saperdae,species,Microbacterium saperdae +Brevibacterium stationis,species,Corynebacterium stationis +Brevibacterium testaceum,species,Microbacterium testaceum +Brevibacterium vitaeruminis,species,Corynebacterium vitaeruminis +Brevibacterium vitarumen,species,Corynebacterium vitaeruminis +Brevilactibacter coleopterorum,species,Propioniciclava coleopterorum +Brevilactibacter flavus,species,Propioniciclava flava +Brevilactibacter sinopodophylli,species,Propioniciclava sinopodophylli +Brevilactibacter,genus,Propioniciclava +Brevundimonas bullata,species,Mycoplana bullata +Brevundimonas vitisensis,species,Brevundimonas vitis +Brotolimicola acetigignens,species,Waltera acetigignens +Brotolimicola,genus,Waltera +Brucella abortus,species,Brucella melitensis +Brucella canis,species,Brucella melitensis +Brucella ceti,species,Brucella melitensis +Brucella inopinata,species,Brucella melitensis +Brucella microti,species,Brucella melitensis +Brucella neotomae,species,Brucella melitensis +Brucella ovis,species,Brucella melitensis +Brucella suis,species,Brucella melitensis +Brucella vulpis,species,Brucella melitensis +Brumicola nitratireducens,species,Glaciecola nitratireducens +Brumicola pallidula,species,Glaciecola pallidula +Brumicola,genus,Glaciecola +Bryantella formatexigens,species,Marvinbryantia formatexigens +Bryantella,genus,Marvinbryantia +Budvicia aquatica,species,Budvicia aquatica +Budvicia,genus,Budvicia +Burkholderia acidipaludis,species,Paraburkholderia acidipaludis +Burkholderia alpina,species,Pararobbsia alpina +Burkholderia andropogonis,species,Robbsia andropogonis +Burkholderia arationis,species,Caballeronia arationis +Burkholderia arvi,species,Caballeronia arvi +Burkholderia aspalathi,species,Paraburkholderia aspalathi +Burkholderia bannensis,species,Paraburkholderia bannensis +Burkholderia bryophila,species,Paraburkholderia bryophila +Burkholderia caballeronis,species,Paraburkholderia caballeronis +Burkholderia caledonica,species,Paraburkholderia caledonica +Burkholderia calidae,species,Caballeronia calidae +Burkholderia caribensis,species,Paraburkholderia caribensis +Burkholderia caryophylli,species,Trinickia caryophylli +Burkholderia catudaia,species,Caballeronia catudaia +Burkholderia choica,species,Caballeronia choica +Burkholderia cocovenenans,species,Burkholderia gladioli +Burkholderia cocovenenans,species,Burkholderia gladioli +Burkholderia concitans,species,Caballeronia concitans +Burkholderia cordobensis,species,Caballeronia cordobensis +Burkholderia denitrificans,species,Paraburkholderia denitrificans +Burkholderia diazotrophica,species,Paraburkholderia diazotrophica +Burkholderia dilworthii,species,Paraburkholderia dilworthii +Burkholderia dipogonis,species,Paraburkholderia dipogonis +Burkholderia eburnea,species,Paraburkholderia eburnea +Burkholderia endofungorum,species,Mycetohabitans endofungorum +Burkholderia ferrariae,species,Paraburkholderia ferrariae +Burkholderia fortuita,species,Caballeronia fortuita +Burkholderia fungorum,species,Paraburkholderia fungorum +Burkholderia ginsengisoli,species,Paraburkholderia ginsengisoli +Burkholderia ginsengiterrae,species,Paraburkholderia ginsengiterrae +Burkholderia glathei,species,Caballeronia glathei +Burkholderia glathei,species,Caballeronia glathei +Burkholderia glebae,species,Caballeronia glebae +Burkholderia graminis,species,Paraburkholderia graminis +Burkholderia grimmiae,species,Caballeronia grimmiae +Burkholderia heleia,species,Paraburkholderia heleia +Burkholderia hospita,species,Paraburkholderia hospita +Burkholderia humi,species,Caballeronia humi +Burkholderia humisilvae,species,Paraburkholderia humisilvae +Burkholderia hypogeia,species,Caballeronia hypogeia +Burkholderia insecticola,species,Caballeronia insecticola +Burkholderia insulsa,species,Paraburkholderia fungorum +Burkholderia jiangsuensis,species,Caballeronia jiangsuensis +Burkholderia jirisanensis,species,Paraburkholderia jirisanensis +Burkholderia kirstenboschensis,species,Paraburkholderia kirstenboschensis +Burkholderia kururiensis,species,Paraburkholderia kururiensis +Burkholderia megalochromosomata,species,Caballeronia megalochromosomata +Burkholderia megapolitana,species,Paraburkholderia megapolitana +Burkholderia metalliresistens,species,Paraburkholderia metalliresistens +Burkholderia mimosarum,species,Paraburkholderia mimosarum +Burkholderia monticola,species,Paraburkholderia monticola +Burkholderia nodosa,species,Paraburkholderia nodosa +Burkholderia norimbergensis,species,Pandoraea norimbergensis +Burkholderia novacaledonica,species,Caballeronia novacaledonica +Burkholderia oxyphila,species,Paraburkholderia oxyphila +Burkholderia panaciterrae,species,Paraburkholderia ginsengiterrae +Burkholderia pedi,species,Caballeronia pedi +Burkholderia peredens,species,Caballeronia peredens +Burkholderia phenazinia,species,Paraburkholderia phenazinia +Burkholderia phenazinium,species,Paraburkholderia phenazinia +Burkholderia phenoliruptrix,species,Paraburkholderia phenoliruptrix +Burkholderia phymatum,species,Paraburkholderia phymatum +Burkholderia phytofirmans,species,Paraburkholderia phytofirmans +Burkholderia pickettii,species,Ralstonia pickettii +Burkholderia ptereochthonis,species,Caballeronia ptereochthonis +Burkholderia pyrrocinia,species,Burkholderia pyrrocinia +Burkholderia rhizosphaerae,species,Paraburkholderia rhizosphaerae +Burkholderia rhizoxinica,species,Mycetohabitans rhizoxinica +Burkholderia rhynchosiae,species,Paraburkholderia rhynchosiae +Burkholderia sabiae,species,Paraburkholderia sabiae +Burkholderia sacchari,species,Paraburkholderia sacchari +Burkholderia sartisoli,species,Paraburkholderia sartisoli +Burkholderia sediminicola,species,Paraburkholderia sediminicola +Burkholderia silvatlantica,species,Paraburkholderia silvatlantica +Burkholderia solanacearum,species,Ralstonia solanacearum +Burkholderia soli,species,Trinickia soli +Burkholderia solisilvae,species,Paraburkholderia solisilvae +Burkholderia sordidicola,species,Caballeronia sordidicola +Burkholderia sprentiae,species,Paraburkholderia sprentiae +Burkholderia susongensis,species,Paraburkholderia susongensis +Burkholderia symbiotica,species,Trinickia symbiotica +Burkholderia telluris,species,Caballeronia telluris +Burkholderia temeraria,species,Caballeronia temeraria +Burkholderia terrae,species,Paraburkholderia terrae +Burkholderia terrestris,species,Caballeronia terrestris +Burkholderia terricola,species,Paraburkholderia terricola +Burkholderia tropica,species,Paraburkholderia tropica +Burkholderia tuberum,species,Paraburkholderia tuberum +Burkholderia turbans,species,Caballeronia turbans +Burkholderia uboniae,species,Burkholderia ubonensis +Burkholderia udeis,species,Caballeronia udeis +Burkholderia ultramafica,species,Paraburkholderia ultramafica +Burkholderia unamae,species,Paraburkholderia unamae +Burkholderia vandii,species,Burkholderia plantarii +Burkholderia xenovorans,species,Paraburkholderia xenovorans +Burkholderia zhejiangensis,species,Caballeronia zhejiangensis +Butyricicoccus desmolans,species,Agathobaculum desmolans +Butyrivibrio crossotus,species,Eshraghiella crossota +Bythopirellula goksoyri,species,Bythopirellula goksoeyrii +Caedibacter caryophila,species,Caedibacter caryophilus +Caenibacterium thermophilum,species,Caldimonas thermodepolymerans +Caenibacterium,genus,Caldimonas +Caenibius fulvus,species,Fulverythrobacter fulvus +Caldalkalibacillus horti,species,Bacillus horti +Caldalkalibacillus uzonensis,species,Thermalkalibacillus uzonensis +Calderobacterium hydrogenophilum,species,Hydrogenobacter hydrogenophilus +Calderobacterium,genus,Hydrogenobacter +Caldicellulosiruptor kristjanssonii,species,Caldicellulosiruptor acetigenus +Caldicellulosiruptor lactoaceticus,species,Caldicellulosiruptor acetigenus +Caldifermentibacillus hisashii,species,Caldibacillus hisashii +Caldifermentibacillus,genus,Caldibacillus +Caldimonas hydrothermale,species,Caldimonas hydrothermalis +Calidifontibacillus azotoformans,species,Schinkia azotoformans +Calidifontibacillus oryziterrae,species,Schinkia oryziterrae +Calidifontimicrobium sediminis,species,Azohydromonas sediminis +Calidifontimicrobium,genus,Azohydromonas +Caloramator viterbensis,species,Caloramator viterbiensis +Calymmatobacterium granulomatis,species,Klebsiella granulomatis +Calymmatobacterium,genus,Klebsiella +Campylobacter butzleri,species,Arcobacter butzleri +Campylobacter cinaedi,species,Helicobacter cinaedi +Campylobacter cryaerophila,species,Arcobacter cryaerophilus +Campylobacter cryaerophilus,species,Arcobacter cryaerophilus +Campylobacter fennelliae,species,Helicobacter fennelliae +Campylobacter hyoilei,species,Campylobacter coli +Campylobacter laridis,species,Campylobacter lari +Campylobacter mustelae,species,Helicobacter mustelae +Campylobacter nitrofigilis,species,Arcobacter nitrofigilis +Campylobacter pylori,species,Helicobacter pylori +Campylobacter pyloridis,species,Helicobacter pylori +Canicola haemoglobinophilus,species,Haemophilus haemoglobinophilus +Canicola,genus,Haemophilus +Capsularis zoogleiformans,species,Bacteroides zoogleoformans +Capsularis zoogleoformans,species,Bacteroides zoogleoformans +Capsularis,genus,Bacteroides +Carbonactinospora thermoautotrophica,species,Streptomyces thermoautotrophicus +Carbonactinospora,genus,Streptomyces +Carbophilus carboxidus,species,Aminobacter carboxidus +Carbophilus,genus,Aminobacter +Carboxydobrachium pacificum,species,Carboxydibrachium pacificum +Carboxydobrachium,genus,Carboxydibrachium +Carboxydochorda subterranea,species,Carboxydichorda subterranea +Carboxydochorda,genus,Carboxydichorda +Carboxylicivirga marinus,species,Carboxylicivirga marina +Carnobacterium piscicola,species,Carnobacterium maltaromaticum +Caseobacter polymorphus,species,Corynebacterium variabile +Caseobacter,genus,Corynebacterium +Catellatospora ferruginea,species,Asanoa ferruginea +Catellatospora koreensis,species,Catelliglobosispora koreensis +Catellatospora matsumotoense,species,Micromonospora matsumotoensis +Catellatospora matsumotoensis,species,Micromonospora matsumotoensis +Catellatospora methionotrophica,species,Catellatospora citrea subsp. methionotrophica +Catellatospora tsunoense,species,Hamadaea tsunoensis +Catellatospora tsunoensis,species,Hamadaea tsunoensis +Catellibacterium aquatile,species,Gemmobacter aquaticus +Catellibacterium caeni,species,Gemmobacter caeni +Catellibacterium changlense,species,Cereibacter changlensis +Catellibacterium nanjingense,species,Gemmobacter nanjingensis +Catellibacterium nectariphilum,species,Gemmobacter nectariphilus +Catellibacterium,genus,Gemmobacter +Catenococcus thiocycli,species,Allocatenococcus thiocycli +Catenococcus thiocyclus,species,Allocatenococcus thiocycli +Catenococcus,genus,Allocatenococcus +Catenovulum maritimus,species,Catenovulum maritimum +Caulobacter bacteroides,species,Brevundimonas bacteroides +Caulobacter crescentus,species,Caulobacter vibrioides +Caulobacter halobacteroides,species,Maricaulis maris +Caulobacter intermedius,species,Brevundimonas intermedia +Caulobacter leidyi,species,Sphingomonas leidyi +Caulobacter leidyia,species,Sphingomonas leidyi +Caulobacter maris,species,Maricaulis maris +Caulobacter profunda,species,Caulobacter profundus +Caulobacter subvibrioides,species,Brevundimonas subvibrioides +Caulobacter variabilis,species,Brevundimonas variabilis +Cedecea sulfonylureivorans,species,Dryocola clanedunensis subsp. sulfonylureivorans +Celeribacter manganoxidans,species,Pacificitalea manganoxidans +Cellulomonas aurantiaca,species,Cellulomonas algicola +Cellulomonas cartae,species,Cellulosimicrobium cellulans +Cellulomonas cellulans,species,Cellulosimicrobium cellulans +Cellulomonas fermentans,species,Actinotalea fermentans +Cellulomonas palmilyticum,species,Cellulomonas palmilytica +Cellulomonas turbata,species,Oerskovia turbata +Cellulophaga uliginosa,species,Zobellia uliginosa +Cellulosimicrobium aquatile,species,Cellulosimicrobium funkei +Cellulosimicrobium fucosivorans,species,Cellulosimicrobium composti +Cellulosimicrobium variabile,species,Isoptericola variabilis +Cereibacter flavus,species,Falsirhodobacter flavus +Cereibacter sediminicola,species,Rhodobacter sediminicola +Cetia pacifica,species,Caminibacter pacificus +Cetia,genus,Caminibacter +Chainia antibiotica,species,Streptomyces sclerotialus +Chainia flava,species,Streptomyces flaviscleroticus +Chainia fumigata,species,Streptomyces fumigatiscleroticus +Chainia kunmingensis,species,Streptomyces kunmingensis +Chainia minutisclerotica,species,Streptomyces minutiscleroticus +Chainia nigra,species,Streptomyces niger +Chainia ochracea,species,Streptomyces ochraceiscleroticus +Chainia olivacea,species,Streptomyces olivaceiscleroticus +Chainia poonensis,species,Streptomyces poonensis +Chainia purpurogena,species,Streptomyces purpurogeneiscleroticus +Chainia rosea,species,Streptomyces roseiscleroticus +Chainia rubra,species,Streptomyces ruber +Chainia violens,species,Streptomyces violens +Chainia,genus,Streptomyces +Chelativorans alearense,species,Chelativorans alearensis +Chelativorans oligotrophicus,species,Chelativorans multitrophicus +Chelativorans xinjiangense,species,Chelativorans xinjiangensis +Chelatobacter heintzii,species,Aminobacter aminovorans +Chelatobacter,genus,Aminobacter +Chimaereicella alkaliphila,species,Algoriphagus alkaliphilus +Chimaereicella boritolerans,species,Algoriphagus boritolerans +Chimaereicella,genus,Algoriphagus +Chioneia algoris,species,Glacieibacterium algoris +Chioneia brumae,species,Glacieibacterium brumae +Chioneia frigida,species,Glacieibacterium frigoris +Chioneia hiemis,species,Glacieibacterium hiemis +Chioneia,genus,Glacieibacterium +Chitinophaga extrema,species,Chitinophaga solisilvae +Chlamydophila abortus,species,Chlamydia abortus +Chlamydophila caviae,species,Chlamydia caviae +Chlamydophila felis,species,Chlamydia felis +Chlamydophila pecorum,species,Chlamydia pecorum +Chlamydophila pneumoniae,species,Chlamydia pneumoniae +Chlamydophila psittaci,species,Chlamydia psittaci +Chlamydophila,genus,Chlamydia +Chlorobium tepidum,species,Chlorobaculum tepidum +Chlorobium vibrioforme,species,Prosthecochloris vibrioformis +Christensenella hongkongensis,species,Catabacter hongkongensis +Chromatium buderi,species,Isochromatium buderi +Chromatium glycolicum,species,Halochromatium glycolicum +Chromatium gracile,species,Marichromatium gracile +Chromatium minus,species,Thiocystis minor +Chromatium minutissimum,species,Allochromatium minutissimum +Chromatium purpuratum,species,Marichromatium purpuratum +Chromatium salexigens,species,Halochromatium salexigens +Chromatium tepidum,species,Thermochromatium tepidum +Chromatium vinosum,species,Allochromatium vinosum +Chromatium violascens,species,Thiocystis violascens +Chromatium warmingii,species,Allochromatium warmingii +Chromobacterium fluviatile,species,Iodobacter fluviatilis +Chromobacterium pseudoviolaceum,species,Chromobacterium violaceum +Chromocurvus halotolerans,species,Chromatocurvus halotolerans +Chromocurvus,genus,Chromatocurvus +Chromohalobacter salarius,species,Salinicola halophilus +Chromohalobacter salexigens,species,Chromohalobacter israelensis +Chryseobacterium arothri,species,Chryseobacterium hominis +Chryseobacterium greenlandense,species,Chryseobacterium aquaticum subsp. greenlandense +Chryseobacterium meningosepticum,species,Elizabethkingia meningoseptica +Chryseobacterium miricola,species,Elizabethkingia miricola +Chryseoglobus frigidaquae,species,Microcella frigidaquae +Chryseoglobus indicus,species,Microcella indica +Chryseoglobus,genus,Microcella +Chryseomonas asuensis,species,Pseudomonas asuensis +Chryseomonas duriflava,species,Pseudomonas duriflava +Chryseomonas luteola,species,Pseudomonas luteola +Chryseomonas oryzihabitans,species,Pseudomonas oryzihabitans +Chryseomonas polytricha,species,Pseudomonas luteola +Chryseomonas psychrotolerans,species,Pseudomonas psychrotolerans +Chryseomonas zeshuii,species,Pseudomonas zeshuii +Chryseomonas,genus,Pseudomonas +Chryseosolibacter histidini,species,Chryseosolibacter histidinae +Chryseosolibacter indicus,species,Chryseosolibacter indicum +Ciceribacter naphthalenivorans,species,Rhizobium naphthalenivorans +Ciceribacter selenitireducens,species,Rhizobium selenitireducens +Citreicella aestuarii,species,Salipiger aestuarii +Citreicella manganoxidans,species,Salipiger marinus +Citreicella marina,species,Salipiger marinus +Citreicella thiooxidans,species,Salipiger thiooxidans +Citreicella,genus,Salipiger +Citrifermentans bemidjiense,species,Geomonas bemidjiensis +Citrifermentans bremense,species,Geomonas bremensis +Citrifermentans pelophilum,species,Geoanaerobacter pelophilus +Citrifermentans,genus,Geomonas +Citrobacter diversum,species,Citrobacter koseri +Citrobacter diversus,species,Citrobacter koseri +Citrobacter telavivum,species,Citrobacter telavivensis +Clavibacter capsici,species,Clavibacter capsici +Clavibacter iranicum,species,Rathayibacter iranicus +Clavibacter iranicus,species,Rathayibacter iranicus +Clavibacter michiganense,species,Clavibacter michiganensis +Clavibacter nebraskensis,species,Clavibacter nebraskensis +Clavibacter rathayi,species,Rathayibacter rathayi +Clavibacter sepedonicus,species,Clavibacter sepedonicus +Clavibacter toxicus,species,Rathayibacter toxicus +Clavibacter tritici,species,Rathayibacter tritici +Clavibacter xyli,species,Leifsonia xyli +Clostridioides mangenotii,species,Metaclostridioides mangenotii +Clostridium absonum,species,Clostridium sardiniense +Clostridium aceticum,species,Andreesenella acetica +Clostridium acidiurici,species,Gottschalkia acidurici +Clostridium acidurici,species,Gottschalkia acidurici +Clostridium aerotolerans,species,Lacrimispora aerotolerans +Clostridium aldenense,species,Enterocloster aldenensis +Clostridium aldrichii,species,Acetivibrio aldrichii +Clostridium algidixylanolyticum,species,Lacrimispora algidixylanolytica +Clostridium alkalicellulosi,species,Acetivibrio alkalicellulosi +Clostridium alkalicellum,species,Acetivibrio alkalicellulosi +Clostridium aminovalericum,species,Anaerocolumna aminovalerica +Clostridium amygdalinum,species,Lacrimispora amygdalina +Clostridium asparagiforme,species,Enterocloster asparagiformis +Clostridium aurantibutyricum,species,Clostridium felsineum +Clostridium barati,species,Clostridium baratii +Clostridium barkeri,species,Eubacterium barkeri +Clostridium bartlettii,species,Intestinibacter bartlettii +Clostridium bifermentans,species,Paraclostridium bifermentans +Clostridium bolteae,species,Enterocloster bolteae +Clostridium bryantii,species,Syntrophospora bryantii +Clostridium caenicola,species,Thermoclostridium caenicola +Clostridium cagae,species,Clostridium caccae +Clostridium caminithermale,species,Paramaledivibacter caminithermalis +Clostridium celerecrescens,species,Lacrimispora celerecrescens +Clostridium cellobioparum,species,Ruminiclostridium cellobioparum +Clostridium cellulolyticum,species,Ruminiclostridium cellulolyticum +Clostridium citroniae,species,Enterocloster citroniae +Clostridium clariflavum,species,Acetivibrio clariflavus +Clostridium clostridiiforme,species,Enterocloster clostridioformis +Clostridium clostridioforme,species,Enterocloster clostridioformis +Clostridium coccoides,species,Blautia producta +Clostridium difficile,species,Clostridioides difficile +Clostridium diolis,species,Clostridium beijerinckii +Clostridium durum,species,Paenibacillus durus +Clostridium fervidum,species,Caloramator fervidus +Clostridium fervidus,species,Caloramator fervidus +Clostridium formicaceticum,species,Andreesenella formicacetica +Clostridium formicoaceticum,species,Andreesenella formicacetica +Clostridium ghoni,species,Paeniclostridium ghonii +Clostridium ghonii,species,Paeniclostridium ghonii +Clostridium glycolicum,species,Terrisporobacter glycolicus +Clostridium glycyrrhizinilyticum,species,Mediterraneibacter glycyrrhizinilyticus +Clostridium halophilium,species,Maledivibacter halophilus +Clostridium halophilum,species,Maledivibacter halophilus +Clostridium hastiforme,species,Tissierella praeacuta +Clostridium hathewayi,species,Hungatella hathewayi +Clostridium hemolyticum,species,Clostridium haemolyticum +Clostridium hiranonis,species,Peptacetobacter hiranonis +Clostridium histolyticum,species,Hathewaya histolytica +Clostridium hungatei,species,Ruminiclostridium hungatei +Clostridium hydroxybenzoicum,species,Sedimentibacter hydroxybenzoicus +Clostridium indicum,species,Lacrimispora amygdalina +Clostridium indolis,species,Lacrimispora indolis +Clostridium intestinalis,species,Clostridium intestinale +Clostridium irregulare,species,Asaccharospora irregularis +Clostridium irregularis,species,Asaccharospora irregularis +Clostridium jeddahense,species,Faecalispora jeddahensis +Clostridium jejuense,species,Anaerocolumna jejuensis +Clostridium josui,species,Ruminiclostridium josui +Clostridium kogasensis,species,Clostridium kogasense +Clostridium lactatifermentans,species,Anaerotignum lactatifermentans +Clostridium laramie,species,Clostridium estertheticum subsp. laramiense +Clostridium laramiense,species,Clostridium estertheticum subsp. laramiense +Clostridium lavalense,species,Enterocloster lavalensis +Clostridium lentocellum,species,Cellulosilyticum lentocellum +Clostridium lentoputrescens,species,Clostridium cochlearium +Clostridium limosum,species,Hathewaya limosa +Clostridium litorale,species,Peptoclostridium litorale +Clostridium lituseburense,species,Romboutsia lituseburensis +Clostridium lortetii,species,Sporohalobacter lortetii +Clostridium mangenotii,species,Metaclostridioides mangenotii +Clostridium maximum,species,Sarcina maxima +Clostridium mayombei,species,Terrisporobacter mayombei +Clostridium methoxybenzovorans,species,Lacrimispora indolis +Clostridium neopropionicum,species,Anaerotignum neopropionicum +Clostridium nexile,species,Faecalimonas nexilis +Clostridium orbiscindens,species,Flavonifractor plautii +Clostridium oroticum,species,Faecalicatena orotica +Clostridium oxalicum,species,Oxalophagus oxalicus +Clostridium papyrosolvens,species,Ruminiclostridium papyrosolvens +Clostridium paradoxum,species,Alkalithermobacter paradoxus +Clostridium paraperfringens,species,Clostridium baratii +Clostridium perenne,species,Clostridium baratii +Clostridium pfennigii,species,Oxobacter pfennigii +Clostridium populeti,species,Anaeromicropila populeti +Clostridium propionicum,species,Anaerotignum propionicum +Clostridium proteoclasticum,species,Butyrivibrio proteoclasticus +Clostridium proteolyticum,species,Hathewaya proteolytica +Clostridium purinilyticum,species,Gottschalkia purinilytica +Clostridium purinolyticum,species,Gottschalkia purinilytica +Clostridium quercicolum,species,Dendrosporobacter quercicolus +Clostridium rectum,species,Fusobacterium mortiferum +Clostridium roseum,species,Clostridium felsineum +Clostridium saccharolyticum,species,Lacrimispora saccharolytica +Clostridium sardiniensis,species,Clostridium sardiniense +Clostridium sartagoformum,species,Clostridium sartagoforme +Clostridium saudii,species,Clostridium saudiense +Clostridium sordellii,species,Paeniclostridium sordellii +Clostridium sphenoides,species,Lacrimispora sphenoides +Clostridium sporosphaeroides,species,Faecalispora sporosphaeroides +Clostridium stercorarium,species,Thermoclostridium stercorarium +Clostridium sticklandii,species,Acetoanaerobium sticklandii +Clostridium straminisolvens,species,Acetivibrio straminisolvens +Clostridium sufflavum,species,Ruminiclostridium sufflavum +Clostridium termitidis,species,Ruminiclostridium cellobioparum subsp. termitidis +Clostridium thermaceticum,species,Neomoorella thermoacetica +Clostridium thermautotrophicum,species,Neomoorella thermoacetica +Clostridium thermoaceticum,species,Neomoorella thermoacetica +Clostridium thermoalcaliphilum,species,Alkalithermobacter thermoalcaliphilus +Clostridium thermoautotrophicum,species,Neomoorella thermoacetica +Clostridium thermocellum,species,Acetivibrio thermocellus +Clostridium thermocopriae,species,Thermoanaerobacter thermocopriae +Clostridium thermohydrosulfuricum,species,Thermoanaerobacter ethanolicus subsp. thermohydrosulfuricus +Clostridium thermolacticum,species,Thermoclostridium stercorarium subsp. thermolacticum +Clostridium thermosaccharolyticum,species,Thermoanaerobacterium thermosaccharolyticum +Clostridium thermosulfurigenes,species,Thermoanaerobacterium thermosulfurigenes +Clostridium thermosulfurogenes,species,Thermoanaerobacterium thermosulfurigenes +Clostridium ultunense,species,Schnuerera ultunensis +Clostridium ventriculi,species,Sarcina ventriculi +Clostridium villosum,species,Filifactor villosus +Clostridium xylanolyticum,species,Lacrimispora xylanolytica +Clostridium xylanovorans,species,Anaerocolumna xylanovorans +Cobetia litoralis,species,Cobetia amphilecti +Cobetia pacifica,species,Cobetia marina +Coenonia anatina,species,Allocoenonia anatina +Coenonia,genus,Allocoenonia +Cognaticolwellia aestuarii,species,Colwellia aestuarii +Cognaticolwellia beringensis,species,Colwellia beringensis +Cognaticolwellia mytili,species,Colwellia mytili +Cognaticolwellia sediminilitoris,species,Colwellia sediminilitoris +Cognaticolwellia,genus,Colwellia +Cognatiluteimonas lumbrici,species,Luteimonas lumbrici +Cognatiluteimonas profundi,species,Lysobacter profundi +Cognatiluteimonas,genus,Luteimonas +Cognatilysobacter bugurensis,species,Lysobacter bugurensis +Cognatilysobacter lacus,species,Lysobacter lacus +Cognatilysobacter segetis,species,Lysobacter segetis +Cognatilysobacter tabacisoli,species,Lysobacter tabacisoli +Cognatilysobacter terrigena,species,Lysobacter terrigena +Cognatilysobacter xinjiangensis,species,Lysobacter xinjiangensis +Cognatilysobacter,genus,Lysobacter +Cohnella candidum,species,Cohnella candida +Cohnella damensis,species,Cohnella damuensis +Collinsella urealyticum,species,Collinsella ureilytica +Colwellia agarivorans,species,Pseudocolwellia agarivorans +Colwellia demingae,species,Colwellia demingiae +Colwellia psychroerythrus,species,Colwellia psychrerythraea +Comamonas acidovorans,species,Delftia acidovorans +Comamonas thiooxidans,species,Comamonas thiooxydans +Companilactobacillus salsicarnum,species,Companilactobacillus mishanensis +Companilactobacillus suantsaicola,species,Companilactobacillus suantsaicola +Conchiformibium kuhniae,species,Conchiformibius kuhniae +Conchiformibium steedae,species,Conchiformibius steedae +Conchiformibium,genus,Conchiformibius +Confluentimicrobium lipolyticum,species,Actibacterium lipolyticum +Confluentimicrobium naphthalenivorans,species,Actibacterium naphthalenivorans +Confluentimicrobium,genus,Actibacterium +Conglomeromonas largomobilis,species,Azospirillum largimobile +Conglomeromonas,genus,Azospirillum +Coprobacillus catenaformis,species,Coprobacillus cateniformis +Coprococcus catus,species,Pseudocoprococcus catus +Coprococcus comes,species,Allocoprococcus comes +Coprococcus immobilis,species,Pseudocoprococcus immobilis +Coprococcus mobilis,species,Faecalimonas mobilis +Coralloluteibacterium thermophilus,species,Coralloluteibacterium thermophilum +Corynebacterium betae,species,Curtobacterium flaccumfaciens +Corynebacterium camporealensis,species,Corynebacterium camporealense +Corynebacterium equi,species,Rhodococcus equi +Corynebacterium fascians,species,Rhodococcus fascians +Corynebacterium flaccumfaciens,species,Curtobacterium flaccumfaciens +Corynebacterium fournierii,species,Corynebacterium fournieri +Corynebacterium godavarianum,species,Corynebacterium gottingense +Corynebacterium hadale,species,Corynebacterium gottingense +Corynebacterium haemomassiliense,species,Corynebacterium haematomassiliense +Corynebacterium hoagii,species,Rhodococcus hoagii +Corynebacterium insidiosum,species,Clavibacter insidiosus +Corynebacterium iranicum,species,Rathayibacter iranicus +Corynebacterium lilium,species,Corynebacterium glutamicum +Corynebacterium liquefaciens,species,Glutamicibacter nicotianae +Corynebacterium michiganense,species,Clavibacter michiganensis +Corynebacterium mooreparkense,species,Corynebacterium variabile +Corynebacterium nebraskense,species,Clavibacter nebraskensis +Corynebacterium nigricans,species,Corynebacterium aurimucosum +Corynebacterium oortii,species,Curtobacterium flaccumfaciens +Corynebacterium parakroppenstedtii,species,Corynebacterium kroppenstedtii +Corynebacterium paurometabolum,species,Tsukamurella paurometabola +Corynebacterium poinsettiae,species,Curtobacterium flaccumfaciens +Corynebacterium pseudokroppenstedtii,species,Corynebacterium kroppenstedtii +Corynebacterium pyogenes,species,Trueperella pyogenes +Corynebacterium ramonii,species,Corynebacterium ulcerans +Corynebacterium rathayi,species,Rathayibacter rathayi +Corynebacterium seminale,species,Corynebacterium glucuronolyticum +Corynebacterium sepedonicum,species,Clavibacter sepedonicus +Corynebacterium tritici,species,Rathayibacter tritici +Corynebacterium tuscaniae,species,Corynebacterium tuscaniense +Corynebacterium urinapleomorphum,species,Corynebacterium urinipleomorphum +Corynebacterium variabilis,species,Corynebacterium variabile +Corynebacterium vitarumen,species,Corynebacterium vitaeruminis +Cosenzaea myxofaciens,species,Proteus myxofaciens +Cosenzaea,genus,Proteus +Cowdria ruminantium,species,Ehrlichia ruminantium +Cowdria,genus,Ehrlichia +Coxiella burneti,species,Coxiella burnetii +Crabtreella saccharophila,species,Shinella zoogloeoides +Crabtreella,genus,Shinella +Crenotalea thermophila,species,Thermoflavifilum thermophilum +Crenotalea,genus,Thermoflavifilum +Croceicoccus estronivorus,species,Caenibius estronivorus +Cronobacter helveticus,species,Franconibacter helveticus +Cronobacter pulveris,species,Franconibacter pulveris +Cronobacter zurichensis,species,Siccibacter turicensis +Cryobacterium mesophilum,species,Terrimesophilobacter mesophilus +Crystallibacter crystallifaciens,species,Arthrobacter crystallopoietes +Crystallibacter crystallopoietes,species,Arthrobacter crystallopoietes +Crystallibacter,genus,Arthrobacter +Cupidesulfovibrio liaohensis,species,Nitratidesulfovibrio liaohensis +Cupidesulfovibrio oxamicus,species,Nitratidesulfovibrio oxamicus +Cupidesulfovibrio termitidis,species,Nitratidesulfovibrio termitidis +Cupidesulfovibrio,genus,Nitratidesulfovibrio +Cupriavidus yeoncheonense,species,Cupriavidus yeoncheonensis +Curtobacterium albidum,species,Curtobacterium citreum +Curtobacterium aurantiacum,species,Curtobacterium flaccumfaciens +Curtobacterium ginsengisoli,species,Gryllotalpicola ginsengisoli +Curtobacterium saperdae,species,Microbacterium saperdae +Curtobacterium testaceum,species,Microbacterium testaceum +Curvibacter fontana,species,Curvibacter fontanus +Cyclobacterium halophilum,species,Cyclobacterium xiamenense +Cyclobacterium marinus,species,Cyclobacterium marinum +Cystobacter minor,species,Archangium minus +Cystobacter minus,species,Archangium minus +Cystobacter violaceus,species,Archangium violaceum +Cytobacillus ciccensis,species,Cytobacillus solani +Cytobacillus dafuensis,species,Bacillus dafuensis +Cytophaga agarovorans,species,Marinilabilia salmonicolor +Cytophaga aprica,species,Flammeovirga aprica +Cytophaga aquatilis,species,Flavobacterium hydatis +Cytophaga arvensicola,species,Chitinophaga arvensicola +Cytophaga columnaris,species,Flavobacterium columnare +Cytophaga diffluens,species,Persicobacter diffluens +Cytophaga fermentans,species,Saccharicrinis fermentans +Cytophaga flevensis,species,Flavobacterium flevense +Cytophaga heparina,species,Pedobacter heparinus +Cytophaga johnsonae,species,Flavobacterium johnsoniae +Cytophaga johnsoniae,species,Flavobacterium johnsoniae +Cytophaga latercula,species,Aquimarina latercula +Cytophaga lytica,species,Cellulophaga lytica +Cytophaga marina,species,Tenacibaculum maritimum +Cytophaga marinoflava,species,Leeuwenhoekiella marinoflava +Cytophaga pectinovora,species,Flavobacterium pectinovorum +Cytophaga psychrophila,species,Flavobacterium psychrophilum +Cytophaga saccharophila,species,Flavobacterium saccharophilum +Cytophaga salmonicolor,species,Marinilabilia salmonicolor +Cytophaga succinicans,species,Flavobacterium succinicans +Cytophaga uliginosa,species,Zobellia uliginosa +Cytophaga xylanolytica,species,Breznakibacter xylanolyticus +Dechloromonas suillum,species,Azospira oryzae +Dechlorosoma suillum,species,Azospira oryzae +Dechlorosoma,genus,Azospira +Defluvibacter lusatiae,species,Aquamicrobium lusatiense +Defluvibacter lusatiensis,species,Aquamicrobium lusatiense +Defluvibacter,genus,Aquamicrobium +Defluvicoccus vanus,species,Defluviicoccus vanus +Defluvicoccus,genus,Defluviicoccus +Defluviimonas aestuarii,species,Albidovulum aestuarii +Defluviimonas alba,species,Frigidibacter mobilis +Defluviimonas aquaemixtae,species,Albidovulum aquaemixtae +Defluviimonas denitrificans,species,Albidovulum denitrificans +Defluviimonas indica,species,Allgaiera indica +Defluviimonas nitratireducens,species,Pseudothioclava nitratireducens +Defluviimonas pyrenivorans,species,Acidimangrovimonas pyrenivorans +Defluviimonas sediminis,species,Albidovulum sediminis +Defluviimonas,genus,Albidovulum +Dehalospirillum multivorans,species,Sulfurospirillum multivorans +Dehalospirillum,genus,Sulfurospirillum +Deinobacter grandis,species,Deinococcus grandis +Deinobacter,genus,Deinococcus +Deinococcus erythromyxa,species,Kocuria rosea +Deinococcus mumbaiensis,species,Deinococcus ficus +Deinococcus sahariens,species,Deinococcus saharensis +Deinococcus saudiensis,species,Deinococcus soli +Deinococcus swuensis,species,Deinococcus radiopugnans +Deinococcus xibeiensis,species,Deinococcus wulumuqiensis +Deleya aesta,species,Halomonas aquamarina +Deleya aquamarina,species,Halomonas aquamarina +Deleya cupida,species,Halomonas cupida +Deleya halophila,species,Halomonas halophila +Deleya marina,species,Cobetia marina +Deleya pacifica,species,Halomonas pacifica +Deleya salina,species,Halomonas halophila +Deleya venusta,species,Halomonas venusta +Deleya,genus,Halomonas +Dennerimonas mangrovi,species,Aureimonas mangrovi +Dennerimonas populi,species,Aureimonas populi +Dennerimonas,genus,Aureimonas +Dermabacter hominus,species,Dermabacter hominis +Dermatophilus chelonae,species,Austwickia chelonae +Desertactinospora gelatinilytica,species,Spongiactinospora gelatinilytica +Desertactinospora,genus,Spongiactinospora +Desertiactinospora gelatinilytica,species,Spongiactinospora gelatinilytica +Desertiactinospora,genus,Spongiactinospora +Desertivirga xinjiangensis,species,Pedobacter xinjiangensis +Desulfallas alcoholivorax,species,Desulfotruncus alcoholivorax +Desulfallas arcticus,species,Desulfotruncus arcticus +Desulfallas geothermicus,species,Desulfoscipio geothermicus +Desulfallas gibsoniae,species,Desulfoscipio gibsoniae +Desulfitobacterium aromaticivorans,species,Paradesulfitobacterium aromaticivorans +Desulfitobacterium frappieri,species,Desulfitobacterium hafniense +Desulfobacter giganteus,species,Desulfovibrio giganteus +Desulfobacterium anilini,species,Desulfatiglans anilini +Desulfobacterium autotrophicum,species,Desulforapulum autotrophicum +Desulfobacterium catecholicum,species,Desulfocastanea catecholica +Desulfobacterium cetonicum,species,Desulfosarcina cetonica +Desulfobacterium macestii,species,Desulfomicrobium macestii +Desulfobacterium niacini,species,Desulfocicer niacini +Desulfobacterium phenolicum,species,Desulfobacula phenolica +Desulfobacterium vacuolatum,species,Desulfocicer vacuolatum +Desulfobaculum bizertensis,species,Desulfobaculum bizertense +Desulfobaculum xiamenensis,species,Desulfobaculum xiamenense +Desulfobulbus japonicus,species,Desulfogranum japonicum +Desulfobulbus marinus,species,Desulfogranum marinum +Desulfobulbus mediterraneus,species,Desulfogranum mediterraneum +Desulfocapsa sulfoexigens,species,Desulfocapsa sulfexigens +Desulfococcus niacini,species,Desulfocicer niacini +Desulfofarcimen intricatum,species,Desulfolucanica intricata +Desulfoferula mesophilus,species,Desulfoferula mesophila +Desulfohalobium utahense,species,Desulfovermiculus utahensis +Desulfohalotomaculum alkaliphilum,species,Desulfofalx alkaliphila +Desulfohalotomaculum peckii,species,Desulfovectis peckii +Desulfohalotomaculum tongense,species,Desulforadius tongensis +Desulfohalovibrio alkalitolerans,species,Alkalidesulfovibrio alkalitolerans +Desulfolucianica intricata,species,Desulfolucanica intricata +Desulfolucianica,genus,Desulfolucanica +Desulfomicrobium baculatus,species,Desulfomicrobium baculatum +Desulfomicrobium escambium,species,Desulfomicrobium escambiense +Desulfomicrobium thermophilum,species,Thermodesulfomicrobium thermophilum +Desulfomonas pigra,species,Desulfovibrio piger +Desulfomonas,genus,Desulfovibrio +Desulfomusa hansenii,species,Desulfofaba hansenii +Desulfomusa,genus,Desulfofaba +Desulfonema ishimotoi,species,Desulfonema ishimotonii +Desulforhabdus amnigenus,species,Desulforhabdus amnigena +Desulfosarcina cetonicum,species,Desulfosarcina cetonica +Desulfosporosinus auripigmentum,species,Desulfosporosinus auripigmenti +Desulfotomaculum acetoxidans,species,Desulfofarcimen acetoxidans +Desulfotomaculum aeronauticum,species,Desulforamulus aeronauticus +Desulfotomaculum alcoholivorax,species,Desulfotruncus alcoholivorax +Desulfotomaculum alkaliphilum,species,Desulfofalx alkaliphila +Desulfotomaculum aquiferis,species,Desulforamulus aquiferis +Desulfotomaculum arcticum,species,Desulfotruncus arcticus +Desulfotomaculum auripigmentum,species,Desulfosporosinus auripigmenti +Desulfotomaculum australicum,species,Desulfofundulus australicus +Desulfotomaculum carboxydivorans,species,Desulfotomaculum nigrificans +Desulfotomaculum ferrireducens,species,Desulforamulus ferrireducens +Desulfotomaculum geothermicum,species,Desulfoscipio geothermicus +Desulfotomaculum gibsoniae,species,Desulfoscipio gibsoniae +Desulfotomaculum guttoideum,species,Lacrimispora sphenoides +Desulfotomaculum halophilum,species,Desulfohalotomaculum halophilum +Desulfotomaculum hydrothermale,species,Desulforamulus hydrothermalis +Desulfotomaculum intricatum,species,Desulfolucanica intricata +Desulfotomaculum kuznetsovii,species,Desulfofundulus kuznetsovii +Desulfotomaculum luciae,species,Desulfofundulus luciae +Desulfotomaculum orientis,species,Desulfosporosinus orientis +Desulfotomaculum peckii,species,Desulfovectis peckii +Desulfotomaculum profundi,species,Desulforamulus profundi +Desulfotomaculum putei,species,Desulforamulus putei +Desulfotomaculum reducens,species,Desulforamulus reducens +Desulfotomaculum ruminis,species,Desulforamulus ruminis +Desulfotomaculum sapomandens,species,Desulfallas sapomandens +Desulfotomaculum solfataricum,species,Desulfofundulus solfataricus +Desulfotomaculum thermoacetoxidans,species,Desulfofundulus thermoacetoxidans +Desulfotomaculum thermobenzoicum,species,Desulfofundulus thermobenzoicus +Desulfotomaculum thermocisternum,species,Desulfofundulus thermocisternus +Desulfotomaculum thermosapovorans,species,Desulfallas thermosapovorans +Desulfotomaculum thermosubterraneum,species,Desulfofundulus thermosubterraneus +Desulfotomaculum tongense,species,Desulforadius tongensis +Desulfovibrio acrylicus,species,Halodesulfovibrio aestuarii +Desulfovibrio aerotolerans,species,Solidesulfovibrio aerotolerans +Desulfovibrio aespoeensis,species,Pseudodesulfovibrio aespoeensis +Desulfovibrio africanus,species,Desulfocurvibacter africanus +Desulfovibrio alaskensis,species,Oleidesulfovibrio alaskensis +Desulfovibrio alcoholivorans,species,Solidesulfovibrio alcoholivorans +Desulfovibrio alcoholovorans,species,Solidesulfovibrio alcoholivorans +Desulfovibrio alkalitolerans,species,Alkalidesulfovibrio alkalitolerans +Desulfovibrio arcticus,species,Humidesulfovibrio arcticus +Desulfovibrio baarsii,species,Desulfarculus baarsii +Desulfovibrio baculatus,species,Desulfomicrobium baculatum +Desulfovibrio bastinii,species,Maridesulfovibrio bastinii +Desulfovibrio bizertensis,species,Desulfobaculum bizertense +Desulfovibrio burkinensis,species,Solidesulfovibrio burkinensis +Desulfovibrio butyratiphilus,species,Fundidesulfovibrio butyratiphilus +Desulfovibrio capillatus,species,Paucidesulfovibrio capillatus +Desulfovibrio carbinolicus,species,Solidesulfovibrio carbinolicus +Desulfovibrio carbinoliphilus,species,Solidesulfovibrio carbinoliphilus +Desulfovibrio ferrireducens,species,Maridesulfovibrio ferrireducens +Desulfovibrio frigidus,species,Maridesulfovibrio frigidus +Desulfovibrio fructosivorans,species,Solidesulfovibrio fructosivorans +Desulfovibrio fructosovorans,species,Solidesulfovibrio fructosivorans +Desulfovibrio gabonensis,species,Oceanidesulfovibrio gabonensis +Desulfovibrio gigas,species,Megalodesulfovibrio gigas +Desulfovibrio gracilis,species,Paucidesulfovibrio gracilis +Desulfovibrio halophilus,species,Pseudodesulfovibrio halophilus +Desulfovibrio hydrothermalis,species,Maridesulfovibrio hydrothermalis +Desulfovibrio idahonensis,species,Humidesulfovibrio idahonensis +Desulfovibrio indonensis,species,Oceanidesulfovibrio indonesiensis +Desulfovibrio indonesiensis,species,Oceanidesulfovibrio indonesiensis +Desulfovibrio legallis,species,Desulfovibrio legallii +Desulfovibrio longreachii,species,Desulfovibrio longreachensis +Desulfovibrio longus,species,Paucidesulfovibrio longus +Desulfovibrio magneticus,species,Solidesulfovibrio magneticus +Desulfovibrio marinisediminis,species,Halodesulfovibrio marinisediminis +Desulfovibrio marinus,species,Oceanidesulfovibrio marinus +Desulfovibrio marrakechensis,species,Solidesulfovibrio marrakechensis +Desulfovibrio mexicanus,species,Humidesulfovibrio mexicanus +Desulfovibrio oceani,species,Halodesulfovibrio oceani +Desulfovibrio oxamicus,species,Nitratidesulfovibrio oxamicus +Desulfovibrio paquesii,species,Megalodesulfovibrio paquesii +Desulfovibrio piezophilus,species,Pseudodesulfovibrio piezophilus +Desulfovibrio portus,species,Pseudodesulfovibrio portus +Desulfovibrio profundus,species,Pseudodesulfovibrio profundus +Desulfovibrio putealis,species,Fundidesulfovibrio putealis +Desulfovibrio salexigens,species,Maridesulfovibrio salexigens +Desulfovibrio salinus,species,Maridesulfovibrio salinus +Desulfovibrio sapovorans,species,Desulfobotulus sapovorans +Desulfovibrio senegalensis,species,Pseudodesulfovibrio senegalensis +Desulfovibrio senezii,species,Desulfobaculum senezii +Desulfovibrio sulfodismutans,species,Desulfolutivibrio sulfodismutans +Desulfovibrio termitidis,species,Nitratidesulfovibrio termitidis +Desulfovibrio thermophilus,species,Thermodesulfobacterium thermophilum +Desulfovibrio tunisiensis,species,Pseudodesulfovibrio tunisiensis +Desulfovibrio vietnamensis,species,Oleidesulfovibrio vietnamensis +Desulfovibrio vulgaris,species,Nitratidesulfovibrio vulgaris +Desulfurococcus fermentans,species,Desulfurococcus amylolyticus +Desulfurococcus kamchatkensis,species,Desulfurococcus amylolyticus +Desulfurococcus mobilis,species,Desulfurococcus mucosus +Desulfurolobus ambivalens,species,Acidianus ambivalens +Desulfurolobus,genus,Acidianus +Desulfuromonas acetexigens,species,Trichloromonas acetexigens +Devosia nitraria,species,Devosia nitrariae +Devosia subaequoris,species,Devosia soli +Diaminobutyricibacter tongyongensis,species,Leifsonia tongyongensis +Diaminobutyricibacter,genus,Leifsonia +Diaphorobacter polyhydroxybutyrativorans,species,Diaphorobacter nitroreducens +Dickeya dieffenbachiae,species,Dickeya dadantii subsp. dieffenbachiae +Dictyoglomus turgidus,species,Dictyoglomus turgidum +Dietzia cinnamea,species,Dietzia maris +Dietzia natronolimnaios,species,Dietzia natronolimnaea +Dietzia schimae,species,Dietzia kunjamensis subsp. schimae +Diplorickettsia massiliensis,species,Rickettsiella massiliensis +Diplorickettsia,genus,Rickettsiella +Dokdonia diaphoros,species,Dokdonia diaphora +Donghaeana dokdonensis,species,Nonlabens dokdonensis +Donghaeana,genus,Nonlabens +Donghicola xiamenensis,species,Pseudodonghicola xiamenensis +Duganella albus,species,Duganella alba +Duganella ginsengisoli,species,Massilia ginsengisoli +Duganella pernnla,species,Duganella margarita +Duganella rivus,species,Duganella rivi +Dyella yeojuensis,species,Luteibacter yeojuensis +Ectopseudomonas alcaliphila,species,Pseudomonas alcaliphila +Ectopseudomonas chengduensis,species,Pseudomonas chengduensis +Ectopseudomonas composti,species,Pseudomonas composti +Ectopseudomonas guguanensis,species,Pseudomonas guguanensis +Ectopseudomonas hydrolytica,species,Pseudomonas hydrolytica +Ectopseudomonas khazarica,species,Pseudomonas khazarica +Ectopseudomonas mendocina,species,Pseudomonas mendocina +Ectopseudomonas oleovorans,species,Pseudomonas oleovorans +Ectopseudomonas pseudoalcaligenes,species,Pseudomonas oleovorans +Ectopseudomonas toyotomiensis,species,Pseudomonas toyotomiensis +Ectopseudomonas,genus,Pseudomonas +Ectothiorhodosinus mongolicum,species,Ectothiorhodosinus mongolicus +Ectothiorhodospira abdelmalekii,species,Halorhodospira abdelmalekii +Ectothiorhodospira halochloris,species,Halorhodospira halochloris +Ectothiorhodospira halophila,species,Halorhodospira halophila +Ectothiorhodospira marismortui,species,Ectothiorhodospira mobilis +Ectothiorhodospira vacuolata,species,Ectothiorhodospira shaposhnikovii +Edaphobacter lichenicola,species,Tunturiibacter lichenicola +Edaphosphingomonas fennica,species,Sphingomonas fennica +Edaphosphingomonas haloaromaticamans,species,Sphingomonas haloaromaticamans +Edaphosphingomonas laterariae,species,Sphingomonas laterariae +Edaphosphingomonas,genus,Sphingomonas +Edwardsiella anguillimortifera,species,Edwardsiella tarda +Effluviibacter roseus,species,Pontibacter roseus +Effluviibacter,genus,Pontibacter +Eggerthella hongkongensis,species,Paraeggerthella hongkongensis +Eggerthella lenta,species,Eggerthella lenta +Eggerthella,genus,Eggerthella +Ehrlichia equi,species,Anaplasma phagocytophilum +Ehrlichia phagocytophila,species,Anaplasma phagocytophilum +Ekhidna lutea,species,Echidna lutea +Ekhidna,genus,Echidna +Elizabethkingia endophytica,species,Elizabethkingia anophelis +Elkelangia baekryungensis,species,Novosphingopyxis baekryungensis +Elkelangia,genus,Novosphingopyxis +Elytrosporangium brasiliense,species,Streptomyces brasiliensis +Elytrosporangium brasiliensis,species,Streptomyces brasiliensis +Elytrosporangium carpinense,species,Streptomyces carpinensis +Elytrosporangium spirale,species,Streptomyces spiralis +Elytrosporangium,genus,Streptomyces +Emcibacter congregatus,species,Paremcibacter congregatus +Endobacterium cerealis,species,Endobacterium cereale +Ensifer americanum,species,Ensifer americanus +Ensifer kummerowiae,species,Ensifer meliloti +Ensifer morelense,species,Ensifer morelensis +Ensifer xinjiangensis,species,Ensifer fredii +Enterobacter aerogenes,species,Klebsiella aerogenes +Enterobacter agglomerans,species,Pantoea agglomerans +Enterobacter amnigenus,species,Lelliottia amnigena +Enterobacter arachidis,species,Kosakonia arachidis +Enterobacter cowanii,species,Kosakonia cowanii +Enterobacter dissolvens,species,Enterobacter cloacae subsp. dissolvens +Enterobacter gergoviae,species,Pluralibacter gergoviae +Enterobacter helveticus,species,Franconibacter helveticus +Enterobacter intermedium,species,Kluyvera intermedia +Enterobacter intermedius,species,Kluyvera intermedia +Enterobacter massiliensis,species,Phytobacter massiliensis +Enterobacter muelleri,species,Enterobacter asburiae +Enterobacter nimipressuralis,species,Lelliottia nimipressuralis +Enterobacter oligotrophica,species,Enterobacter oligotrophicus +Enterobacter oryzae,species,Kosakonia oryzae +Enterobacter oryzendophyticus,species,Kosakonia oryzendophytica +Enterobacter oryziphilus,species,Kosakonia oryziphila +Enterobacter pulveris,species,Franconibacter pulveris +Enterobacter pyrinus,species,Pluralibacter pyrinus +Enterobacter radicincitans,species,Kosakonia radicincitans +Enterobacter sacchari,species,Kosakonia sacchari +Enterobacter sakazakii,species,Cronobacter sakazakii +Enterobacter tabaci,species,Enterobacter mori +Enterobacter taylorae,species,Enterobacter cancerogenus +Enterobacter turicensis,species,Siccibacter turicensis +Enterobacter xiangfangensis,species,Enterobacter hormaechei subsp. xiangfangensis +Enterocloster aldensis,species,Enterocloster aldenensis +Enterococcus flavescens,species,Enterococcus casseliflavus +Enterococcus porcinus,species,Enterococcus villorum +Enterococcus saccharominimus,species,Enterococcus italicus +Enterococcus seriolicida,species,Lactococcus garvieae +Enterococcus solitarius,species,Tetragenococcus solitarius +Enterococcus xinjiangensis,species,Enterococcus lactis +Enterorhabdus caecimuris,species,Adlercreutzia caecimuris +Enterorhabdus mucosicola,species,Adlercreutzia mucosicola +Enterorhabdus muris,species,Adlercreutzia muris +Enterorhabdus,genus,Adlercreutzia +Enterovibrio pacificus,species,Veronia pacifica +Entomohabitans teleogrylli,species,Erwinia teleogrylli +Entomohabitans,genus,Erwinia +Entomoplasma entomophilum,species,Mesoplasma entomophilum +Entomoplasma florum,species,Mesoplasma florum +Entomoplasma lucivorax,species,Williamsoniiplasma lucivorax +Entomoplasma luminosum,species,Williamsoniiplasma luminosum +Entomoplasma melaleucae,species,Mesoplasma melaleucae +Entomoplasma multilocale,species,Acholeplasma multilocale +Entomoplasma somnilux,species,Williamsoniiplasma somnilux +Entomospira entomophilus,species,Entomospira entomophila +Entomospira nematocera,species,Entomospira nematocerorum +Eoetvoesia caeni,species,Eoetvoesiella caeni +Eoetvoesia,genus,Eoetvoesiella +Eperythrozoon ovis,species,Mycoplasma ovis +Eperythrozoon suis,species,Mycoplasma suis +Eperythrozoon wenyoni,species,Mycoplasma wenyonii +Eperythrozoon wenyonii,species,Mycoplasma wenyonii +Epibacterium horizontis,species,Tritonibacter horizontis +Epibacterium mobile,species,Tritonibacter mobilis +Epibacterium multivorans,species,Tritonibacter multivorans +Epibacterium scottomollicae,species,Tritonibacter scottomollicae +Epilithonimonas arachidiradicis,species,Chryseobacterium arachidiradicis +Epilithonimonas bovis,species,Chryseobacterium bovis +Epilithonimonas caeni,species,Chryseobacterium caeni +Epilithonimonas ginsengisoli,species,Chryseobacterium ginsengiterrae +Epilithonimonas hispanica,species,Chryseobacterium hispanicum +Epilithonimonas hominis,species,Chryseobacterium hominis +Epilithonimonas hungarica,species,Chryseobacterium hungaricum +Epilithonimonas lactis,species,Chryseobacterium halperniae +Epilithonimonas mollis,species,Chryseobacterium molle +Epilithonimonas pallida,species,Chryseobacterium pallidum +Epilithonimonas psychrotolerans,species,Chryseobacterium psychrotolerans +Epilithonimonas tenax,species,Chryseobacterium tenax +Epilithonimonas xixisoli,species,Chryseobacterium xixisoli +Epilithonimonas zeae,species,Chryseobacterium zeae +Epilithonimonas,genus,Chryseobacterium +Erwinia alni,species,Brenneria alni +Erwinia ananas,species,Pantoea ananatis +Erwinia ananatis,species,Pantoea ananatis +Erwinia cacticida,species,Pectobacterium cacticida +Erwinia cancerogena,species,Enterobacter cancerogenus +Erwinia carnegieana,species,Pectobacterium carnegieanum +Erwinia carotovora,species,Pectobacterium carotovorum +Erwinia chrysanthemi,species,Dickeya chrysanthemi +Erwinia cypripedii,species,Pantoea cypripedii +Erwinia dissolvens,species,Enterobacter cloacae subsp. dissolvens +Erwinia gerundensis,species,Duffyella gerundensis +Erwinia herbicola,species,Pantoea agglomerans +Erwinia milletiae,species,Pantoea agglomerans +Erwinia nigrifluens,species,Brenneria nigrifluens +Erwinia nimipressuralis,species,Lelliottia nimipressuralis +Erwinia paradisiaca,species,Dickeya paradisiaca +Erwinia persicinus,species,Erwinia persicina +Erwinia quercina,species,Lonsdalea quercina +Erwinia rubrifaciens,species,Brenneria rubrifaciens +Erwinia salicis,species,Brenneria salicis +Erwinia stewartii,species,Pantoea stewartii +Erwinia uredovora,species,Pantoea ananatis +Erythrobacter aquimaris,species,Qipengyuania aquimaris +Erythrobacter aquimixticola,species,Aurantiacibacter aquimixticola +Erythrobacter arachoides,species,Aurantiacibacter arachoides +Erythrobacter atlanticus,species,Aurantiacibacter atlanticus +Erythrobacter citreus,species,Qipengyuania citrea +Erythrobacter flavus,species,Qipengyuania flava +Erythrobacter gaetbuli,species,Qipengyuania gaetbuli +Erythrobacter gangjinensis,species,Aurantiacibacter gangjinensis +Erythrobacter jejuensis,species,Parerythrobacter jejuensis +Erythrobacter luteolus,species,Pontixanthobacter luteolus +Erythrobacter luteus,species,Aurantiacibacter luteus +Erythrobacter lutimaris,species,Alteriqipengyuania lutimaris +Erythrobacter marinus,species,Aurantiacibacter marinus +Erythrobacter marisflavi,species,Qipengyuania marisflavi +Erythrobacter nanhaisediminis,species,Qipengyuania nanhaisediminis +Erythrobacter odishensis,species,Aurantiacibacter odishensis +Erythrobacter pelagi,species,Qipengyuania pelagi +Erythrobacter seohaensis,species,Qipengyuania seohaensis +Erythrobacter spongiae,species,Aurantiacibacter spongiae +Erythrobacter suaedae,species,Aurantiacibacter suaedae +Erythrobacter vulgaris,species,Qipengyuania vulgaris +Erythrobacter xanthus,species,Aurantiacibacter xanthus +Erythrobacter zhengii,species,Aurantiacibacter zhengii +Erythromicrobium ramosum,species,Erythrobacter ramosus +Erythromicrobium,genus,Erythrobacter +Erythromonas ursincola,species,Blastomonas ursincola +Erythromonas,genus,Blastomonas +Escherichia adecarboxylata,species,Leclercia adecarboxylata +Escherichia blattae,species,Shimwellia blattae +Escherichia vulneris,species,Pseudescherichia vulneris +Eubacterium acidaminophilum,species,Peptoclostridium acidaminophilum +Eubacterium aerofaciens,species,Collinsella aerofaciens +Eubacterium alactolyticum,species,Pseudoramibacter alactolyticus +Eubacterium angustum,species,Andreesenia angusta +Eubacterium biforme,species,Holdemanella biformis +Eubacterium budayi,species,Clostridium budayi +Eubacterium combesii,species,Clostridium combesii +Eubacterium contortum,species,Faecalicatena contorta +Eubacterium cylindroides,species,Faecalitalea cylindroides +Eubacterium desmolans,species,Agathobaculum desmolans +Eubacterium dolichum,species,Amedibacillus dolichus +Eubacterium eligens,species,Lachnospira eligens +Eubacterium exiguum,species,Slackia exigua +Eubacterium fissicatena,species,Faecalicatena fissicatena +Eubacterium formicigenerans,species,Dorea formicigenerans +Eubacterium fossor,species,Atopobium fossor +Eubacterium hadrum,species,Anaerostipes hadrus +Eubacterium hallii,species,Anaerobutyricum hallii +Eubacterium hominis,species,Hoskinsella hominis +Eubacterium lentum,species,Eggerthella lenta +Eubacterium moniliforme,species,Clostridium moniliforme +Eubacterium nitritogenes,species,Clostridium nitritogenes +Eubacterium oxidoreducans,species,Eubacterium oxidoreducens +Eubacterium plautii,species,Flavonifractor plautii +Eubacterium rectale,species,Agathobacter rectalis +Eubacterium saburreum,species,Lachnoanaerobaculum saburreum +Eubacterium saphenus,species,Eubacterium saphenum +Eubacterium suis,species,Actinobaculum suis +Eubacterium tarantellae,species,Clostridium tarantellae +Eubacterium tarantellus,species,Clostridium tarantellae +Eubacterium tardum,species,Eubacterium minutum +Eubacterium timidum,species,Mogibacterium timidum +Evansella caseinilyticus,species,Evansella caseinilytica +Evansella cellulosilyticus,species,Evansella cellulosilytica +Excellospora viridilutea,species,Actinomadura viridilutea +Excellospora,genus,Actinomadura +Exiguobacterium aquaticum,species,Exiguobacterium mexicanum +Exiguobacterium enclense,species,Exiguobacterium indicum +Exiguobacterium sibiricum,species,Exiguobacterium artemiae +Exiguobacterium soli,species,Exiguobacterium antarcticum +Exobacillus caeni,species,Pseudalkalibacillus caeni +Exobacillus,genus,Pseudalkalibacillus +Fabibacter halotolerans,species,Roseivirga halotolerans +Fabibacter misakiensis,species,Roseivirga misakiensis +Fabibacter pacificus,species,Roseivirga pacifica +Fabibacter,genus,Roseivirga +Fabivirga thermotolerans,species,Roseivirga thermotolerans +Fabivirga,genus,Roseivirga +Facklamia tabacinasalis,species,Ruoffia tabacinasalis +Faecalibacterium hominis,species,Faecalibacterium duncaniae +Faenia rectivirgula,species,Saccharopolyspora rectivirgula +Faenia,genus,Saccharopolyspora +Falcivibrio grandis,species,Mobiluncus mulieris +Falcivibrio vaginalis,species,Mobiluncus holmesii +Falcivibrio,genus,Mobiluncus +Falseniella ignava,species,Facklamia ignava +Falseniella,genus,Facklamia +Falsihalocynthiibacter arcticus,species,Halocynthiibacter arcticus +Falsihalocynthiibacter,genus,Halocynthiibacter +Falsirhodobacter xinxiangensis,species,Rhodobacter xinxiangensis +Falsiroseicyclus tamaricis,species,Pseudoroseicyclus tamaricis +Falsiroseicyclus,genus,Pseudoroseicyclus +Falsiruegeria litorea,species,Ruegeria litorea +Falsiruegeria mediterranea,species,Ruegeria mediterranea +Falsiruegeria,genus,Ruegeria +Faucicola atlantae,species,Moraxella atlantae +Faucicola boevrei,species,Moraxella boevrei +Faucicola osloensis,species,Moraxella osloensis +Fererhizobium litorale,species,Ferirhizobium litorale +Fererhizobium,genus,Ferirhizobium +Ferroplasma cupricumulans,species,Acidiplasma cupricumulans +Fervidobacterium pennavorans,species,Fervidobacterium pennivorans +Filibacter limicola,species,Sporosarcina limicola +Filibacter,genus,Sporosarcina +Filimonas aurantiibacter,species,Arvibacter aurantiibacter +Filobacillus milensis,species,Filobacillus milosensis +Flagellimonas alginolytica,species,Flagellimonas alginilytica +Flagellimonas antarctica,species,Flagellimonas taeanensis +Flaviaesturariibacter amylovorans,species,Flaviaestuariibacter amylovorans +Flaviaesturariibacter flavus,species,Flaviaestuariibacter flavus +Flaviaesturariibacter luteus,species,Flaviaestuariibacter luteus +Flaviaesturariibacter terrae,species,Flaviaestuariibacter terrae +Flaviaesturariibacter,genus,Flaviaestuariibacter +Flavihalobacter algicola,species,Psychroserpens algicola +Flavihalobacter,genus,Psychroserpens +Flavimonas oryzihabitans,species,Pseudomonas oryzihabitans +Flavimonas,genus,Pseudomonas +Flavinovosphingobium sediminicola,species,Novosphingobium sediminicola +Flavinovosphingobium,genus,Novosphingobium +Flaviramulus ichthyoenteri,species,Wocania ichthyoenteri +Flavirhabdus iliipiscaria,species,Lacinutrix iliipiscaria +Flavirhabdus,genus,Lacinutrix +Flavisphingomonas formosensis,species,Sphingomonas formosensis +Flavisphingomonas,genus,Sphingomonas +Flavisphingopyxis soli,species,Sphingorhabdus soli +Flavisphingopyxis,genus,Sphingorhabdus +Flavivirga aquatica,species,Algibacter aquaticus +Flavobacterium anatoliense,species,Myroides anatoliensis +Flavobacterium aquatilis,species,Flavobacterium aquatile +Flavobacterium balustinum,species,Chryseobacterium balustinum +Flavobacterium bomensis,species,Flavobacterium bomense +Flavobacterium branchiophila,species,Flavobacterium branchiophilum +Flavobacterium breve,species,Empedobacter brevis +Flavobacterium capsulatum,species,Novosphingobium capsulatum +Flavobacterium ceti,species,Myroides ceti +Flavobacterium cloacae,species,Myroides cloacae +Flavobacterium daemonensis,species,Flavobacterium daemonense +Flavobacterium esteraromaticum,species,Microbacterium esteraromaticum +Flavobacterium ferrugineum,species,Terrimonas ferruginea +Flavobacterium gleum,species,Chryseobacterium gleum +Flavobacterium gondwanense,species,Psychroflexus gondwanensis +Flavobacterium halmephilium,species,Halomonas halmophila +Flavobacterium halmophilum,species,Halomonas halmophila +Flavobacterium heparinum,species,Pedobacter heparinus +Flavobacterium indologenes,species,Chryseobacterium indologenes +Flavobacterium indoltheticum,species,Chryseobacterium indoltheticum +Flavobacterium jejuensis,species,Flavobacterium jejuense +Flavobacterium jocheonensis,species,Flavobacterium jocheonense +Flavobacterium kyungheensis,species,Flavobacterium kyungheense +Flavobacterium marinotypicum,species,Microbacterium maritypicum +Flavobacterium marinum,species,Myroides aquimaris +Flavobacterium meningosepticum,species,Elizabethkingia meningoseptica +Flavobacterium mizutaii,species,Sphingobacterium mizutaii +Flavobacterium multivorum,species,Sphingobacterium multivorum +Flavobacterium nakdongensis,species,Flavobacterium nakdongense +Flavobacterium odoratum,species,Myroides odoratus +Flavobacterium okeanokoites,species,Planococcus okeanokoites +Flavobacterium qiangtangensis,species,Flavobacterium qiangtangense +Flavobacterium resinovorum,species,Novosphingobium resinovorum +Flavobacterium salegens,species,Salegentibacter salegens +Flavobacterium scophthalmum,species,Chryseobacterium scophthalmum +Flavobacterium spartansii,species,Flavobacterium tructae +Flavobacterium spiritivorum,species,Sphingobacterium spiritivorum +Flavobacterium tangerina,species,Flavobacterium tangerinum +Flavobacterium thalpophilum,species,Sphingobacterium thalpophilum +Flavobacterium uliginosum,species,Zobellia uliginosa +Flavobacterium viscosus,species,Flavobacterium viscosum +Flavobacterium yabuuchiae,species,Sphingobacterium spiritivorum +Flavobacterium zhairuonensis,species,Flavobacterium zhairuonense +Flavobacterium zhouii,species,Flavobacterium zhoui +Flectobacillus glomeratus,species,Polaribacter glomeratus +Flectobacillus marinus,species,Cyclobacterium marinum +Flectobacillus rhizosphaerae,species,Flectobacillus roseus +Flexibacter aurantiacus,species,Flavobacterium johnsoniae subsp. aurantiacum +Flexibacter canadensis,species,Solitalea canadensis +Flexibacter columnaris,species,Flavobacterium columnare +Flexibacter elegans,species,Eisenibacter elegans +Flexibacter filiformis,species,Chitinophaga filiformis +Flexibacter japonensis,species,Chitinophaga japonensis +Flexibacter litoralis,species,Bernardetia litoralis +Flexibacter maritimus,species,Tenacibaculum maritimum +Flexibacter ovolyticus,species,Tenacibaculum ovolyticum +Flexibacter polymorphus,species,Garritya polymorpha +Flexibacter psychrophilus,species,Flavobacterium psychrophilum +Flexibacter roseolus,species,Hugenholtzia roseola +Flexibacter ruber,species,Thermoflexibacter ruber +Flexibacter sancti,species,Chitinophaga sancti +Flexibacter tractuosus,species,Marivirga tractuosa +Flintibacter butyricum,species,Flintibacter butyricus +Fluctibacter halophilus,species,Aestuariibacter halophilus +Fluctibacter,genus,Aestuariibacter +Fluoribacter bozemanae,species,Legionella bozemanae +Fluoribacter dumoffii,species,Legionella dumoffii +Fluoribacter gormanii,species,Legionella gormanii +Fluoribacter,genus,Legionella +Fluviibacterium aquatile,species,Meridianimarinicoccus aquatilis +Fluviibacterium,genus,Meridianimarinicoccus +Formosa spongicola,species,Xanthomarina spongicola +Fournierella massiliensis,species,Allofournierella massiliensis +Fournierella,genus,Allofournierella +Francisella guangzhouensis,species,Allofrancisella guangzhouensis +Francisella novicida,species,Francisella tularensis subsp. novicida +Francisella piscicida,species,Francisella noatunensis +Franklinella schreckenbergeri,species,Allofranklinella schreckenbergeri +Franklinella,genus,Allofranklinella +Franzmannia pantelleriensis,species,Halomonas pantelleriensis +Franzmannia qiaohouensis,species,Halomonas qiaohouensis +Franzmannia,genus,Halomonas +Fredinandcohnia aciditolerans,species,Ferdinandcohnia aciditolerans +Fredinandcohnia humi,species,Ferdinandcohnia humi +Fredinandcohnia onubensis,species,Ferdinandcohnia onubensis +Fredinandcohnia salidurans,species,Ferdinandcohnia salidurans +Fredinandcohnia,genus,Ferdinandcohnia +Friedmanniella aerolata,species,Microlunatus aerolatus +Friedmanniella antarctica,species,Microlunatus antarcticus +Friedmanniella capsulata,species,Microlunatus capsulatus +Friedmanniella endophytica,species,Microlunatus kandeliicorticis +Friedmanniella flava,species,Microlunatus flavus +Friedmanniella lacustris,species,Microlunatus lacustris +Friedmanniella lucida,species,Microlunatus lucidus +Friedmanniella okinawensis,species,Microlunatus okinawensis +Friedmanniella sagamiharensis,species,Microlunatus sagamiharensis +Friedmanniella spumicola,species,Microlunatus spumicola +Friedmanniella,genus,Microlunatus +Frigoribacterium mesophilum,species,Parafrigoribacterium mesophilum +Frondicola australicus,species,Frondihabitans australicus +Frondicola,genus,Frondihabitans +Fundibacter jadensis,species,Alcanivorax jadensis +Fundibacter,genus,Alcanivorax +Fuscovulum blasticum,species,Pseudogemmobacter blasticus +Fuscovulum,genus,Pseudogemmobacter +Fusobacterium alocis,species,Filifactor alocis +Fusobacterium animalis,species,Fusobacterium nucleatum +Fusobacterium canium,species,Fusobacterium canifelinum +Fusobacterium equinum,species,Fusobacterium gonidiaformans +Fusobacterium plauti,species,Flavonifractor plautii +Fusobacterium plautii,species,Flavonifractor plautii +Fusobacterium polymorphum,species,Fusobacterium nucleatum subsp. polymorphum +Fusobacterium polysaccharolyticum,species,Clostridium polysaccharolyticum +Fusobacterium prausnitzii,species,Faecalibacterium prausnitzii +Fusobacterium pseudonecrophorum,species,Fusobacterium varium +Fusobacterium sulci,species,Eubacterium sulci +Fusobacterium vincentii,species,Fusobacterium nucleatum +Futiania mangrovii,species,Futiania mangrovi +Gaetbulicola byunsanensis,species,Marivita byunsanensis +Gaetbulicola,genus,Marivita +Gaetbulimicrobium brevivitae,species,Aquimarina brevivitae +Gaetbulimicrobium,genus,Aquimarina +Galbibacter orientalis,species,Joostella marina +Gemella bergeriae,species,Gemella bergeri +Gemelliphila asaccharolytica,species,Gemella asaccharolytica +Gemelliphila palaticanis,species,Gemella palaticanis +Gemelliphila,genus,Gemella +Geminicoccus flavidas,species,Geminicoccus flavidus +Gemmobacter changlensis,species,Cereibacter changlensis +Gemmobacter fulva,species,Gemmobacter fulvus +Gemmobacter intermedius,species,Falsigemmobacter intermedius +Geobacillus caldiproteolyticus,species,Thermaerobacillus caldiproteolyticus +Geobacillus caldoproteolyticus,species,Thermaerobacillus caldiproteolyticus +Geobacillus caldoxylosilyticus,species,Parageobacillus caldoxylosilyticus +Geobacillus debilis,species,Caldibacillus debilis +Geobacillus galactosidasius,species,Parageobacillus galactosidasius +Geobacillus gargensis,species,Geobacillus thermocatenulatus +Geobacillus pallidus,species,Aeribacillus pallidus +Geobacillus tepidamans,species,Anoxybacteroides tepidamans +Geobacillus thermantarcticus,species,Parageobacillus thermantarcticus +Geobacillus thermoglucosidans,species,Parageobacillus thermoglucosidasius +Geobacillus thermoglucosidasius,species,Parageobacillus thermoglucosidasius +Geobacillus toebii,species,Parageobacillus toebii +Geobacillus yumthangensis,species,Parageobacillus yumthangensis +Geobacter bemidjiensis,species,Geomonas bemidjiensis +Geobacter bremensis,species,Geomonas bremensis +Geobacter chapellei,species,Pelotalea chapellei +Geobacter daltonii,species,Geotalea daltonii +Geobacter luticola,species,Geomobilimonas luticola +Geobacter pelophilus,species,Geoanaerobacter pelophilus +Geobacter toluenoxydans,species,Geotalea toluenoxydans +Geobacter uraniireducens,species,Geotalea uraniireducens +Geodermatophilus brasiliensis,species,Klenkia brasiliensis +Geodermatophilus poikilotrophi,species,Geodermatophilus poikilotrophus +Geodermatophilus soli,species,Klenkia soli +Geodermatophilus taihuensis,species,Klenkia taihuensis +Geodermatophilus terrae,species,Klenkia terrae +Geomonas fuzhouensis,species,Geomonas subterranea +Geomonas nitrogeniifigens,species,Geomonas diazotrophica +Geopseudomonas aromaticivorans,species,Pseudomonas aromaticivorans +Geopseudomonas guangdongensis,species,Pseudomonas guangdongensis +Geopseudomonas sagittaria,species,Pseudomonas sagittaria +Geopseudomonas,genus,Pseudomonas +Gibbsiella papilionis,species,Gibbsiella dentisursi +Glaciecola agarilytica,species,Paraglaciecola chathamensis +Glaciecola aquimarina,species,Paraglaciecola aquimarina +Glaciecola arctica,species,Paraglaciecola arctica +Glaciecola chathamensis,species,Paraglaciecola chathamensis +Glaciecola lipolytica,species,Aliiglaciecola lipolytica +Glaciecola mesophila,species,Paraglaciecola mesophila +Glaciecola polaris,species,Paraglaciecola polaris +Glaciecola psychrophila,species,Paraglaciecola psychrophila +Glaciibacter flavus,species,Orlajensenia flava +Glaciibacter kafniensis,species,Leifsonia kafniensis +Glaciibacter psychrotolerans,species,Leifsonia psychrotolerans +Globicatella sanguis,species,Globicatella sanguinis +Gluconacetobacter europaeus,species,Komagataeibacter europaeus +Gluconacetobacter hansenii,species,Komagataeibacter hansenii +Gluconacetobacter intermedius,species,Komagataeibacter intermedius +Gluconacetobacter kakiaceti,species,Komagataeibacter kakiaceti +Gluconacetobacter kombuchae,species,Komagataeibacter kombuchae +Gluconacetobacter maltaceti,species,Komagataeibacter maltaceti +Gluconacetobacter medellinensis,species,Komagataeibacter medellinensis +Gluconacetobacter nataicola,species,Komagataeibacter nataicola +Gluconacetobacter oboediens,species,Komagataeibacter oboediens +Gluconacetobacter rhaeticus,species,Komagataeibacter rhaeticus +Gluconacetobacter saccharivorans,species,Komagataeibacter saccharivorans +Gluconacetobacter sucrofermentans,species,Komagataeibacter sucrofermentans +Gluconacetobacter swingsii,species,Komagataeibacter swingsii +Gluconacetobacter xylinus,species,Komagataeibacter xylinus +Gluconoacetobacter aggeris,species,Gluconacetobacter aggeris +Gluconoacetobacter diazotrophicus,species,Gluconacetobacter diazotrophicus +Gluconoacetobacter europaeus,species,Komagataeibacter europaeus +Gluconoacetobacter hansenii,species,Komagataeibacter hansenii +Gluconoacetobacter liquefaciens,species,Gluconacetobacter liquefaciens +Gluconoacetobacter xylinus,species,Komagataeibacter xylinus +Gluconoacetobacter,genus,Gluconacetobacter +Gluconobacter asaii,species,Gluconobacter cerinus +Gluconobacter nephelii,species,Gluconobacter japonicus +Gluconobacter uchimurae,species,Gluconobacter oxydans +Glutamicibacter ardleyensis,species,Glutamicibacter bergerei +Glutamicibacter mysorens,species,Glutamicibacter nicotianae +Goodfellowia coeruleoviolacea,species,Goodfellowiella coeruleoviolacea +Goodfellowia,genus,Goodfellowiella +Gordona aichiensis,species,Gordonia aichiensis +Gordona amarae,species,Gordonia amarae +Gordona amarae,species,Gordonia amarae +Gordona bronchialis,species,Gordonia bronchialis +Gordona hirsuta,species,Gordonia hirsuta +Gordona hydrophobica,species,Gordonia hydrophobica +Gordona rubripertincta,species,Gordonia rubripertincta +Gordona rubropertinctus,species,Gordonia rubripertincta +Gordona sputi,species,Gordonia sputi +Gordona terrae,species,Gordonia terrae +Gordona,genus,Gordonia +Gordonia amarae,species,Gordonia amarae +Gordonia kroppenstedtii,species,Jongsikchunia kroppenstedtii +Gordonia nitida,species,Gordonia alkanivorans +Gordonia rubropertinctus,species,Gordonia rubripertincta +Gordonibacillus kamchatkensis,species,Gordoniibacillus kamchatkensis +Gordonibacillus,genus,Gordoniibacillus +Gordonibacter faecihominis,species,Gordonibacter urolithinfaciens +Gottfriedia acidiceler,species,Gottfriedia acidiceleris +Gottfriedia endophyticus,species,Gottfriedia endophytica +Grahamella peromysci,species,Bartonella peromysci +Grahamella talpae,species,Bartonella talpae +Grahamella,genus,Bartonella +Gramella aestuarii,species,Christiangramia aestuarii +Gramella aestuariivivens,species,Christiangramia aestuariivivens +Gramella antarctica,species,Christiangramia antarctica +Gramella aquimixticola,species,Christiangramia aquimixticola +Gramella bathymodioli,species,Christiangramia bathymodioli +Gramella crocea,species,Christiangramia crocea +Gramella echinicola,species,Christiangramia echinicola +Gramella flava,species,Christiangramia flava +Gramella forsetii,species,Christiangramia forsetii +Gramella fulva,species,Christiangramia fulva +Gramella gaetbulicola,species,Christiangramia gaetbulicola +Gramella lutea,species,Christiangramia lutea +Gramella marina,species,Christiangramia marina +Gramella oceani,species,Christiangramia oceani +Gramella oceanisediminis,species,Christiangramia oceanisediminis +Gramella planctonica,species,Christiangramia planctonica +Gramella portivictoriae,species,Christiangramia portivictoriae +Gramella sabulilitoris,species,Christiangramia sabulilitoris +Gramella salexigens,species,Christiangramia salexigens +Gramella sediminilitoris,species,Christiangramia sediminilitoris +Gramella sediminis,species,Christiangramia sediminis +Gramella,genus,Christiangramia +Grimontia celer,species,Grimontia celeris +Grylomicrobium aquisgranensis,species,Grylomicrobium aquisgranense +Guptibacillus algicola,species,Alkalihalobacillus algicola +Guptibacillus hemicentroti,species,Alkalihalobacillus hemicentroti +Guptibacillus hwajinpoensis,species,Pseudalkalibacillus hwajinpoensis +Guptibacillus sedimenti,species,Pseudalkalibacillus sedimenti +Guptibacillus spartinae,species,Pseudalkalibacillus spartinae +Guptibacillus,genus,Pseudalkalibacillus +Haemobartonella canis,species,Mycoplasma haemocanis +Haemobartonella felis,species,Mycoplasma haemofelis +Haemophilus actinomycetemcomitans,species,Aggregatibacter actinomycetemcomitans +Haemophilus aphrophilus,species,Aggregatibacter aphrophilus +Haemophilus avium,species,Avibacterium avium +Haemophilus equigenitalis,species,Taylorella equigenitalis +Haemophilus paragallinarum,species,Avibacterium paragallinarum +Haemophilus paraphrophilus,species,Aggregatibacter aphrophilus +Haemophilus parasuis,species,Glaesserella parasuis +Haemophilus pleuropneumoniae,species,Actinobacillus pleuropneumoniae +Haemophilus segnis,species,Aggregatibacter segnis +Haemophilus vaginalis,species,Gardnerella vaginalis +Hahella antarctica,species,Allohahella antarctica +Halalkalibacter suaedae,species,Bacillus suaedae +Halalkalibacterium roseum,species,Halalkalibaculum roseum +Halalkalibacterium,genus,Halalkalibaculum +Halanaerobacter chitinovorans,species,Halanaerobacter chitinivorans +Halanaerobacter lacunaris,species,Halanaerobacter lacunarum +Halanaerobium acetoethylicum,species,Halanaerobium acetethylicum +Halanaerobium lacusroseus,species,Halanaerobium lacusrosei +Halanaerobium salsugo,species,Halanaerobium salsuginis +Halarcobacter anaerophilus,species,Arcobacter anaerophilus +Halarcobacter bivalviorum,species,Arcobacter bivalviorum +Halarcobacter ebronensis,species,Arcobacter ebronensis +Halarcobacter,genus,Arcobacter +Haliea mediterranea,species,Parahaliea mediterranea +Haliea rubra,species,Pseudohaliea rubra +Halioglobus lutimaris,species,Pseudohalioglobus lutimaris +Halioglobus pacificus,species,Parahalioglobus pacificus +Halioglobus sediminis,species,Seongchinamella sediminis +Hallella bergensis,species,Prevotella bergensis +Hallella colorans,species,Prevotella colorans +Hallella mizrahii,species,Prevotella mizrahii +Hallella multisaccharivorax,species,Prevotella multisaccharivorax +Haloactinobacterium album,species,Ruania alba +Haloactinobacterium glacieicola,species,Occultella glacieicola +Haloactinobacterium kanbiaonis,species,Occultella kanbiaonis +Haloactinobacterium,genus,Ruania +Haloanaerobacter chitinovorans,species,Halanaerobacter chitinivorans +Haloanaerobacter lacunaris,species,Halanaerobacter lacunarum +Haloanaerobacter salinarius,species,Halanaerobacter salinarius +Haloanaerobacter,genus,Halanaerobacter +Haloanaerobium acetethylicum,species,Halanaerobium acetethylicum +Haloanaerobium acetoethylicum,species,Halanaerobium acetethylicum +Haloanaerobium alcaliphilum,species,Halanaerobium alcaliphilum +Haloanaerobium congolense,species,Halanaerobium congolense +Haloanaerobium fermentans,species,Halanaerobium fermentans +Haloanaerobium kushneri,species,Halanaerobium kushneri +Haloanaerobium lacusrosei,species,Halanaerobium lacusrosei +Haloanaerobium lacusroseus,species,Halanaerobium lacusrosei +Haloanaerobium praevalens,species,Halanaerobium praevalens +Haloanaerobium saccharolyticum,species,Halanaerobium saccharolyticum +Haloanaerobium salsuginis,species,Halanaerobium salsuginis +Haloanaerobium salsugo,species,Halanaerobium salsuginis +Haloanaerobium,genus,Halanaerobium +Haloarcobacter anaerophilus,species,Arcobacter anaerophilus +Haloarcobacter bivalviorum,species,Arcobacter bivalviorum +Haloarcobacter ebronensis,species,Arcobacter ebronensis +Haloarcobacter,genus,Arcobacter +Haloarcula mukohataei,species,Halomicrobium mukohataei +Halobacterium cutirubrum,species,Halobacterium salinarum +Halobacterium denitrificans,species,Haloferax denitrificans +Halobacterium distributum,species,Halorubrum distributum +Halobacterium distributus,species,Halorubrum distributum +Halobacterium halobium,species,Halobacterium salinarum +Halobacterium lacusprofundi,species,Halorubrum lacusprofundi +Halobacterium mediterranei,species,Haloferax mediterranei +Halobacterium pharaonis,species,Natronomonas pharaonis +Halobacterium piscisalsi,species,Halobacterium salinarum +Halobacterium saccharovorum,species,Halorubrum saccharovorum +Halobacterium salinarium,species,Halobacterium salinarum +Halobacterium sodomense,species,Halorubrum sodomense +Halobacterium trapanicum,species,Halorubrum trapanicum +Halobacterium vallismortis,species,Haloarcula vallismortis +Halobacterium volcanii,species,Haloferax volcanii +Halobacteroides acetoethylicus,species,Halanaerobium acetethylicum +Halobacteroides lacunaris,species,Halanaerobacter lacunarum +Halobellus ramosii,species,Halobellus inordinatus +Halobiforma haloterrestris,species,Natronobacterium haloterrestre +Halobiforma lacisalsi,species,Natronobacterium lacisalsi +Halobiforma nitratireducens,species,Natronobacterium nitratireducens +Halobiforma,genus,Natronobacterium +Halocella cellulolytica,species,Halocella cellulosilytica +Halococcus turkmenicus,species,Haloterrigena turkmenica +Haloferax alexandrinum,species,Haloferax volcanii +Haloferax alexandrinus,species,Haloferax volcanii +Haloferax lucentense,species,Haloferax volcanii +Haloferax lucentensis,species,Haloferax volcanii +Halogranum salarium,species,Halogranum rubrum +Haloincola saccharolytica,species,Halanaerobium saccharolyticum +Haloincola saccharolyticus,species,Halanaerobium saccharolyticum +Haloincola,genus,Halanaerobium +Halomicroarcula amylolytica,species,Haloarcula amylovorans +Halomicroarcula laminariae,species,Haloarcula laminariae +Halomicroarcula limicola,species,Haloarcula limicola +Halomicroarcula marina,species,Haloarcula marina +Halomicroarcula nitratireducens,species,Haloarcula nitratireducens +Halomicroarcula onubensis,species,Haloarcula onubensis +Halomicroarcula pellucida,species,Haloarcula pellucida +Halomicroarcula rubra,species,Haloarcula rubra +Halomicroarcula salina,species,Haloarcula salina +Halomicroarcula salinisoli,species,Haloarcula salinisoli +Halomicroarcula saliterrae,species,Haloarcula saliterrae +Halomicroarcula,genus,Haloarcula +Halomicrobium katesii,species,Halomicrobium mukohataei +Halomonas alkaliantarctica,species,Halomonas neptunia +Halomonas avicenniae,species,Kushneria avicenniae +Halomonas axialensis,species,Halomonas aquamarina +Halomonas canadensis,species,Chromohalobacter canadensis +Halomonas daqingensis,species,Halomonas desiderata +Halomonas halodurans,species,Cobetia marina +Halomonas hydrothermalis,species,Halomonas venusta +Halomonas indalinina,species,Kushneria indalinina +Halomonas israelensis,species,Chromohalobacter israelensis +Halomonas johnsoniae,species,Halomonas hamiltonii +Halomonas magadii,species,Halomonas magadiensis +Halomonas marina,species,Cobetia marina +Halomonas marisflavae,species,Kushneria marisflavi +Halomonas marisflavi,species,Kushneria marisflavi +Halomonas meridiana,species,Halomonas aquamarina +Halomonas niordiana,species,Halomonas niordana +Halomonas nitrilicus,species,Halomonas nitrilica +Halomonas pantelleriense,species,Halomonas pantelleriensis +Halomonas salaria,species,Salinicola salarius +Halomonas salina,species,Halomonas halophila +Halomonas sinaiensis,species,Halomonas caseinilytica +Halomonas variabilis,species,Halovibrio variabilis +Halopeptonella vilamensis,species,Spiribacter vilamensis +Halopeptonella,genus,Spiribacter +Halopiger djelfamassiliensis,species,Halopiger djelfimassiliensis +Halopiger goleamassiliensis,species,Halopiger goleimassiliensis +Halopiger salifodinae,species,Natrinema salifodinae +Haloplanus rallus,species,Haloplanus salinarum +Halopseudomonas nanhaiensis,species,Pseudomonas nanhaiensis +Halorarum halophilum,species,Halobaculum halophilum +Halorarum salinum,species,Halobaculum salinum +Halorarum,genus,Halobaculum +Halorientalis persicus,species,Halorientalis persica +Halorubrobacterium coriense,species,Halorubrum coriense +Halorubrobacterium coriensis,species,Halorubrum coriense +Halorubrobacterium distributum,species,Halorubrum distributum +Halorubrobacterium lacusprofundi,species,Halorubrum lacusprofundi +Halorubrobacterium saccharovorum,species,Halorubrum saccharovorum +Halorubrobacterium sodomense,species,Halorubrum sodomense +Halorubrobacterium,genus,Halorubrum +Halorubrum arcis,species,Halorubrum distributum +Halorubrum chaoviator,species,Halorubrum ezzemoulense +Halorubrum litoreum,species,Halorubrum distributum +Halorubrum terrestre,species,Halorubrum distributum +Halosarcina limi,species,Halogeometricum limi +Halosarcina pallida,species,Halogeometricum pallidum +Halosarcina,genus,Halogeometricum +Halosiccatus urmianus,species,Halomicrobium urmianum +Halosiccatus,genus,Halomicrobium +Haloterrigena daqingensis,species,Natronorubrum daqingense +Haloterrigena hispanica,species,Natrinema hispanicum +Haloterrigena jeotgali,species,Natrinema thermotolerans +Haloterrigena limicola,species,Natrinema limicola +Haloterrigena longa,species,Natrinema longum +Haloterrigena mahii,species,Natrinema mahii +Haloterrigena saccharevitans,species,Natrinema saccharevitans +Haloterrigena thermotolerans,species,Natrinema thermotolerans +Halothiobacillus halophilus,species,Guyparkeria halophila +Halothiobacillus hydrothermalis,species,Guyparkeria hydrothermalis +Halovarius luteus,species,Natribaculum luteum +Halovarius,genus,Natribaculum +Halpernia frigidisoli,species,Chryseobacterium frigidisoli +Halpernia humi,species,Chryseobacterium humi +Halpernia marina,species,Chryseobacterium marinum +Halpernia,genus,Chryseobacterium +Hanstruepera crassostreae,species,Hanstruepera ponticola +Haploplasma axanthum,species,Acholeplasma axanthum +Haploplasma cavigenitalium,species,Acholeplasma cavigenitalium +Haploplasma modicum,species,Acholeplasma modicum +Haploplasma,genus,Acholeplasma +Helicobacter acinonix,species,Helicobacter acinonychis +Helicobacter acinonyx,species,Helicobacter acinonychis +Helicobacter japonicum,species,Helicobacter japonicus +Helicobacter nemestrinae,species,Helicobacter pylori +Heliobacillus mobilis,species,Heliobacterium mobile +Heliobacillus,genus,Heliobacterium +Heliobacterium gestii,species,Heliomicrobium gestii +Heliobacterium modesticaldum,species,Heliomicrobium modesticaldum +Heliobacterium undosum,species,Heliomicrobium undosum +Helmutkoenigia isoptericolens,species,Treponema isoptericolens +Helmutkoenigia,genus,Treponema +Hemophilus aegyptius,species,Haemophilus aegyptius +Hemophilus influenzae,species,Haemophilus influenzae +Hemophilus piscium,species,Haemophilus piscium +Hemophilus pleuropneumoniae,species,Actinobacillus pleuropneumoniae +Hemophilus,genus,Haemophilus +Herbaspirillum aurantiacum,species,Noviherbaspirillum aurantiacum +Herbaspirillum canariense,species,Noviherbaspirillum canariense +Herbaspirillum denitrificans,species,Noviherbaspirillum denitrificans +Herbaspirillum massiliense,species,Noviherbaspirillum massiliense +Herbaspirillum psychrotolerans,species,Noviherbaspirillum psychrotolerans +Herbaspirillum putei,species,Herbaspirillum huttiense subsp. putei +Herbaspirillum soli,species,Noviherbaspirillum soli +Herbiconiux daphne,species,Herbiconiux daphnes +Herbidospora osyris,species,Herbidospora cretacea +Herbivorax saccincola,species,Acetivibrio saccincola +Herbivorax,genus,Acetivibrio +Herpetosiphon cohaerens,species,Lewinella cohaerens +Herpetosiphon llansteffanense,species,Herpetosiphon llansteffanensis +Herpetosiphon nigricans,species,Flavilitoribacter nigricans +Herpetosiphon persicus,species,Lewinella persica +Heyndrickxia coagulans,species,Bacillus coagulans +Hoeflea suaedae,species,Pseudohoeflea suaedae +Holospora obtusa,species,Holospora obtusa +Holospora undulata,species,Holospora undulata +Holzapfelia floricola,species,Holzapfeliella floricola +Holzapfelia,genus,Holzapfeliella +Homoserinimonas hongtaonis,species,Salinibacterium hongtaonis +Homoserinimonas sedimenticola,species,Salinibacterium sedimenticola +Hongia koreensis,species,Kribbella koreensis +Hongia,genus,Kribbella +Hongiella halophila,species,Algoriphagus halophilus +Hongiella mannitolivorans,species,Algoriphagus mannitolivorans +Hongiella marincola,species,Algoriphagus marincola +Hongiella ornithinivorans,species,Algoriphagus ornithinivorans +Hongiella,genus,Algoriphagus +Hoylesella buccalis,species,Prevotella buccalis +Hoylesella enoeca,species,Prevotella enoeca +Hoylesella loescheii,species,Prevotella loescheii +Hoylesella marshii,species,Prevotella marshii +Hoylesella nanceiensis,species,Prevotella nanceiensis +Hoylesella oralis,species,Prevotella oralis +Hoylesella pleuritidis,species,Prevotella pleuritidis +Hoylesella saccharolytica,species,Prevotella saccharolytica +Hoylesella shahii,species,Prevotella shahii +Hoylesella timonensis,species,Prevotella timonensis +Hoylesella,genus,Prevotella +Hoyosella lacisalsi,species,Lolliginicoccus lacisalsi +Hoyosella suaedae,species,Lolliginicoccus suaedae +Huaishuia halophila,species,Celeribacter halophilus +Huaishuia,genus,Celeribacter +Humicoccus flavidus,species,Nakamurella flavida +Humicoccus,genus,Nakamurella +Humihabitans oryzae,species,Intrasporangium oryzae +Humihabitans,genus,Intrasporangium +Humisphingomonas gilva,species,Sphingomonas gilva +Humisphingomonas,genus,Sphingomonas +Hungateiclostridium aldrichii,species,Acetivibrio aldrichii +Hungateiclostridium alkalicellulosi,species,Acetivibrio alkalicellulosi +Hungateiclostridium cellulolyticum,species,Acetivibrio cellulolyticus +Hungateiclostridium clariflavum,species,Acetivibrio clariflavus +Hungateiclostridium mesophilum,species,Acetivibrio mesophilus +Hungateiclostridium saccincola,species,Acetivibrio saccincola +Hungateiclostridium straminisolvens,species,Acetivibrio straminisolvens +Hungateiclostridium thermocellum,species,Acetivibrio thermocellus +Hungateiclostridium,genus,Acetivibrio +Hungatella xylanolytica,species,Lacrimispora xylanisolvens +Hutsoniella sourekii,species,Facklamia sourekii +Hutsoniella,genus,Facklamia +Hwanghaeicola aestuarii,species,Palleronia aestuarii +Hwanghaeicola,genus,Palleronia +Hyalangium gracile,species,Cystobacter gracilis +Hyalangium ruber,species,Hyalangium rubrum +Hydrogeniiclostidium hominis,species,Hydrogeniiclostridium hominis +Hydrogeniiclostidium mannosilyticum,species,Hydrogeniiclostridium mannosilyticum +Hydrogeniiclostidium,genus,Hydrogeniiclostridium +Hydrogenobacter acidophilus,species,Hydrogenobaculum acidophilum +Hyphomicrobium facilis,species,Hyphomicrobium facile +Hyphomicrobium indicum,species,Photobacterium indicum +Hyphomicrobium neptunium,species,Hyphomonas neptunia +Hyphomonas atlanticus,species,Hyphomonas atlantica +Hyphomonas neptunium,species,Hyphomonas neptunia +Hyunsoonleella pallidilutea,species,Jejuia pallidilutea +Hyunsoonleella udoensis,species,Hyunsoonleella udonensis +Ichthyenterobacterium magnum,species,Psychroserpens magnus +Ichthyenterobacterium,genus,Psychroserpens +Ideonella sakaiensis,species,Piscinibacter sakaiensis +Idiomarina aestuarii,species,Pseudidiomarina aestuarii +Idiomarina andamanensis,species,Pseudidiomarina andamanensis +Idiomarina aquimaris,species,Pseudidiomarina aquimaris +Idiomarina atlantica,species,Pseudidiomarina atlantica +Idiomarina donghaiensis,species,Pseudidiomarina donghaiensis +Idiomarina halophila,species,Pseudidiomarina halophila +Idiomarina homiensis,species,Pseudidiomarina homiensis +Idiomarina insulisalsae,species,Pseudidiomarina insulisalsae +Idiomarina mangrovi,species,Pseudidiomarina mangrovi +Idiomarina marina,species,Pseudidiomarina marina +Idiomarina maris,species,Aliidiomarina maris +Idiomarina maritima,species,Pseudidiomarina tainanensis +Idiomarina planktonica,species,Pseudidiomarina planktonica +Idiomarina salinarum,species,Pseudidiomarina salinarum +Idiomarina sediminum,species,Pseudidiomarina sediminum +Idiomarina tainanensis,species,Pseudidiomarina tainanensis +Idiomarina taiwanensis,species,Pseudidiomarina taiwanensis +Idiomarina woesei,species,Pseudidiomarina woesei +Ilumatobacter coccineum,species,Ilumatobacter coccineus +Ilumatobacter nonamiense,species,Ilumatobacter nonamiensis +Indolivaga alginatilytica,species,Dysgonomonas alginatilytica +Indolivaga capnocytophagoides,species,Dysgonomonas capnocytophagoides +Indolivaga macrotermitis,species,Dysgonomonas macrotermitis +Indolivaga,genus,Dysgonomonas +Insectihabitans xujianqingii,species,Limnobaculum xujianqingii +Insectihabitans,genus,Limnobaculum +Insulambacter thermoxylanivorax,species,Insulibacter thermoxylanivorax +Insulambacter,genus,Insulibacter +Iocasia fonsfrigidae,species,Iocasia frigidifontis +Iodobacter fluviatile,species,Iodobacter fluviatilis +Isoalcanivorax indicus,species,Alcanivorax indicus +Isoalcanivorax pacificus,species,Alcanivorax pacificus +Isoalcanivorax,genus,Alcanivorax +Jahnia thaxteri,species,Jahnella thaxteri +Jahnia,genus,Jahnella +Janibacter brevis,species,Janibacter terrae +Jejubacter calystegiae,species,Jejuibacter calystegiae +Jejubacter,genus,Jejuibacter +Jeongeuplla avenae,species,Jeongeupella avenae +Jeongeuplla,genus,Jeongeupella +Jeotgalicoccus halophilus,species,Jeotgalicoccus aerolatus +Jeotgalicoccus pinnipedialis,species,Phocicoccus pinnipedialis +Jeotgalicoccus schoeneichii,species,Phocicoccus schoeneichii +Jinshanibacter allomyrinae,species,Limnobaculum allomyrinae +Jinshanibacter xujianqingii,species,Limnobaculum xujianqingii +Jinshanibacter zhutongyuii,species,Limnobaculum zhutongyuii +Jinshanibacter,genus,Limnobaculum +Jishengella endophytica,species,Micromonospora endophytica +Jishengella zingiberis,species,Micromonospora zingiberis +Jishengella,genus,Micromonospora +Kaistella antarctica,species,Chryseobacterium antarcticum +Kaistella anthropi,species,Chryseobacterium anthropi +Kaistella carnis,species,Chryseobacterium carnis +Kaistella chaponensis,species,Chryseobacterium chaponense +Kaistella faecalis,species,Chryseobacterium faecale +Kaistella haifensis,species,Chryseobacterium haifense +Kaistella jeonii,species,Chryseobacterium jeonii +Kaistella koreensis,species,Chryseobacterium koreense +Kaistella montana,species,Chryseobacterium montanum +Kaistella palustris,species,Chryseobacterium palustre +Kaistella solincola,species,Chryseobacterium solincola +Kaistella treverensis,species,Chryseobacterium treverense +Kaistella yonginensis,species,Chryseobacterium yonginense +Kaistella,genus,Chryseobacterium +Kalamiella piersonii,species,Pantoea piersonii +Kalamiella,genus,Pantoea +Kandeliimicrobium roseum,species,Oceaniglobus roseus +Kandeliimicrobium,genus,Oceaniglobus +Kibdelosporangium albatum,species,Allokutzneria albata +Kineococcus aureolus,species,Kineococcus terrestris +Kineococcus endophytica,species,Kineococcus endophyticus +Kineococcus glutineturens,species,Kineococcus glutinatus +Kineococcus marinus,species,Pseudokineococcus marinus +Kineococcus terreus,species,Kineococcus terrestris +Kingella indologenes,species,Suttonella indologenes +Kingella orale,species,Kingella oralis +Kinneretia alba,species,Roseateles albus +Kinneretia aquae,species,Roseateles aquae +Kinneretia asaccharophila,species,Roseateles asaccharophilus +Kinneretia koreensis,species,Roseateles koreensis +Kinneretia oligotropha,species,Roseateles oligotrophus +Kinneretia sediminis,species,Paucibacter sediminis +Kinneretia subflava,species,Roseateles subflavus +Kinneretia violae,species,Roseateles violae +Kinneretia,genus,Roseateles +Kitasatoa diplospora,species,Streptomyces purpureus +Kitasatoa kauaiensis,species,Streptomyces purpureus +Kitasatoa nagasakiensis,species,Streptomyces purpureus +Kitasatoa purpurea,species,Streptomyces purpureus +Kitasatoa,genus,Streptomyces +Kitasatospora cochleata,species,Kitasatospora cinereorecta +Kitasatospora kazusanensis,species,Kitasatospora kazusensis +Kitasatospora niigatensis,species,Kitasatospora cineracea +Kitasatospora psammotica,species,Kitasatospora aureofaciens +Kitasatospora setalba,species,Kitasatospora setae +Kitasatosporia azatica,species,Kitasatospora azatica +Kitasatosporia cochleata,species,Kitasatospora cinereorecta +Kitasatosporia cystarginea,species,Kitasatospora cystarginea +Kitasatosporia grisea,species,Kitasatospora grisea +Kitasatosporia griseola,species,Kitasatospora griseola +Kitasatosporia mediocidica,species,Kitasatospora mediocidica +Kitasatosporia papulosa,species,Kitasatospora papulosa +Kitasatosporia paracochleata,species,Kitasatospora paracochleata +Kitasatosporia phosalacinea,species,Kitasatospora phosalacinea +Kitasatosporia setae,species,Kitasatospora setae +Kitasatosporia,genus,Kitasatospora +Klebsiella africanensis,species,Klebsiella africana +Klebsiella alba,species,Klebsiella quasipneumoniae subsp. similipneumoniae +Klebsiella mobilis,species,Klebsiella aerogenes +Klebsiella ozaenae,species,Klebsiella pneumoniae subsp. ozaenae +Klebsiella rhinoscleromatis,species,Klebsiella pneumoniae subsp. rhinoscleromatis +Klebsiella singaporensis,species,Klebsiella variicola +Klebsiella trevisanii,species,Klebsiella planticola +Kluyvera cochleae,species,Kluyvera intermedia +Kocuria erythromyxa,species,Kocuria rosea +Kocuria halotolerans,species,Rothia halotolerans +Kocuria koreensis,species,Rothia koreensis +Kocuria kristinae,species,Rothia kristinae +Kocuria polaris,species,Kocuria rosea subsp. polaris +Kocuria uropygialis,species,Rothia uropygialis +Kocuria uropygioeca,species,Rothia uropygioeca +Koreibacter algae,species,Paraoerskovia marina +Koreibacter,genus,Paraoerskovia +Koserella trabulsii,species,Yokenella regensburgei +Koserella,genus,Yokenella +Krasilnikovia cinnamonea,species,Krasilnikovia cinnamomea +Krokinobacter diaphorus,species,Dokdonia diaphora +Krokinobacter eikastus,species,Dokdonia eikasta +Krokinobacter genikus,species,Dokdonia genika +Krokinobacter,genus,Dokdonia +Ktedobacter racemifer,species,Ktedonobacter racemifer +Ktedobacter,genus,Ktedonobacter +Labilibacter aurantiacus,species,Saccharicrinis aurantiacus +Labilibacter marinus,species,Saccharicrinis marinus +Labilibacter,genus,Saccharicrinis +Labilibaculum euxinus,species,Labilibaculum euxinicum +Labrenzia aggregata,species,Roseibium aggregatum +Labrenzia alba,species,Roseibium album +Labrenzia alexandrii,species,Roseibium alexandrii +Labrenzia marina,species,Roseibium marinum +Labrenzia polysiphoniae,species,Roseibium polysiphoniae +Labrenzia salina,species,Roseibium salinum +Labrenzia suaedae,species,Roseibium suaedae +Labrenzia,genus,Roseibium +Labrys methylaminiphilus,species,Labrys methylaminiphila +Labrys monachus,species,Labrys monacha +Labrys monahos,species,Labrys monacha +Labrys portucalensis,species,Labrys neptuniae +Lachnospira multiparis,species,Lachnospira multipara +Lacicoccus alkaliphilus,species,Salinicoccus alkaliphilus +Lacicoccus kunmingensis,species,Salinicoccus kunmingensis +Lacicoccus qingdaonensis,species,Salinicoccus qingdaonensis +Lacicoccus,genus,Salinicoccus +Lacinutrix chionocetis,species,Lacinutrix chionoecetis +Lacticaseibacillus rhamnosus,species,Lactobacillus rhamnosus +Lacticigenium naphtae,species,Lacticigenium naphthae +Lactiplantibacillus garii,species,Lactiplantibacillus garii +Lactobacillus achengensis,species,Lapidilactobacillus achengensis +Lactobacillus acidifarinae,species,Levilactobacillus acidifarinae +Lactobacillus acidipiscis,species,Ligilactobacillus acidipiscis +Lactobacillus agilis,species,Ligilactobacillus agilis +Lactobacillus algidus,species,Dellaglioa algida +Lactobacillus alimentarius,species,Companilactobacillus alimentarius +Lactobacillus allii,species,Companilactobacillus allii +Lactobacillus amylophilus,species,Amylolactobacillus amylophilus +Lactobacillus amylotrophicus,species,Amylolactobacillus amylotrophicus +Lactobacillus angrenensis,species,Levilactobacillus angrenensis +Lactobacillus animalis,species,Ligilactobacillus animalis +Lactobacillus antri,species,Limosilactobacillus antri +Lactobacillus apinorum,species,Apilactobacillus apinorum +Lactobacillus apodemi,species,Ligilactobacillus apodemi +Lactobacillus aquaticus,species,Liquorilactobacillus aquaticus +Lactobacillus argentoratensis,species,Lactiplantibacillus argentoratensis +Lactobacillus arizonensis,species,Lactiplantibacillus plantarum +Lactobacillus aviarius,species,Ligilactobacillus aviarius +Lactobacillus backii,species,Loigolactobacillus backii +Lactobacillus baiquanensis,species,Companilactobacillus baiquanensis +Lactobacillus bambusae,species,Levilactobacillus bambusae +Lactobacillus baoqingensis,species,Lacticaseibacillus baoqingensis +Lactobacillus bavaricus,species,Latilactobacillus sakei +Lactobacillus bayanensis,species,Lapidilactobacillus bayanensis +Lactobacillus bifermentans,species,Loigolactobacillus bifermentans +Lactobacillus binensis,species,Loigolactobacillus binensis +Lactobacillus bobalius,species,Companilactobacillus bobalius +Lactobacillus bombi,species,Bombilactobacillus bombi +Lactobacillus bombintestini,species,Apilactobacillus bombintestini +Lactobacillus brantae,species,Lacticaseibacillus brantae +Lactobacillus brevis,species,Levilactobacillus brevis +Lactobacillus buchneri,species,Lentilactobacillus buchneri +Lactobacillus bulgaricus,species,Lactobacillus delbrueckii subsp. bulgaricus +Lactobacillus cacaonum,species,Liquorilactobacillus cacaonum +Lactobacillus camelliae,species,Lacticaseibacillus camelliae +Lactobacillus capillatus,species,Liquorilactobacillus capillatus +Lactobacillus carnis,species,Carnobacterium maltaromaticum +Lactobacillus casei,species,Lacticaseibacillus casei +Lactobacillus catenaforme,species,Eggerthia catenaformis +Lactobacillus catenaformis,species,Eggerthia catenaformis +Lactobacillus caviae,species,Limosilactobacillus caviae +Lactobacillus cellobiosus,species,Limosilactobacillus fermentum +Lactobacillus cerevisiae,species,Levilactobacillus cerevisiae +Lactobacillus ceti,species,Ligilactobacillus ceti +Lactobacillus chiayiensis,species,Lacticaseibacillus chiayiensis +Lactobacillus coleohominis,species,Limosilactobacillus coleohominis +Lactobacillus collinoides,species,Secundilactobacillus collinoides +Lactobacillus composti,species,Agrilactobacillus composti +Lactobacillus concavus,species,Lapidilactobacillus concavus +Lactobacillus confusa,species,Weissella confusa +Lactobacillus confusus,species,Weissella confusa +Lactobacillus coryniformis,species,Loigolactobacillus coryniformis +Lactobacillus crustorum,species,Companilactobacillus crustorum +Lactobacillus curieae,species,Lentilactobacillus curieae +Lactobacillus curtus,species,Furfurilactobacillus curtus +Lactobacillus curvatus,species,Latilactobacillus curvatus +Lactobacillus cypricasei,species,Ligilactobacillus acidipiscis +Lactobacillus daoliensis,species,Lactiplantibacillus daoliensis +Lactobacillus daowaiensis,species,Lactiplantibacillus daowaiensis +Lactobacillus daqingensis,species,Lacticaseibacillus daqingensis +Lactobacillus dextrinicus,species,Lapidilactobacillus dextrinicus +Lactobacillus diolivorans,species,Lentilactobacillus diolivorans +Lactobacillus divergens,species,Carnobacterium divergens +Lactobacillus dongliensis,species,Lactiplantibacillus dongliensis +Lactobacillus durianis,species,Paucilactobacillus vaccinostercus +Lactobacillus enshiensis,species,Levilactobacillus enshiensis +Lactobacillus equi,species,Ligilactobacillus equi +Lactobacillus equigenerosi,species,Limosilactobacillus equigenerosi +Lactobacillus fabifermentans,species,Lactiplantibacillus fabifermentans +Lactobacillus faecis,species,Ligilactobacillus faecis +Lactobacillus farciminis,species,Companilactobacillus farciminis +Lactobacillus farraginis,species,Lentilactobacillus farraginis +Lactobacillus ferintoshensis,species,Lentilactobacillus parabuchneri +Lactobacillus fermentum,species,Limosilactobacillus fermentum +Lactobacillus floricola,species,Holzapfeliella floricola +Lactobacillus florum,species,Fructilactobacillus florum +Lactobacillus formosensis,species,Companilactobacillus formosensis +Lactobacillus fructivorans,species,Fructilactobacillus fructivorans +Lactobacillus fructosus,species,Fructobacillus fructosus +Lactobacillus frumenti,species,Limosilactobacillus frumenti +Lactobacillus fuchuensis,species,Latilactobacillus fuchuensis +Lactobacillus fujinensis,species,Levilactobacillus fujinensis +Lactobacillus furfuricola,species,Companilactobacillus furfuricola +Lactobacillus futsaii,species,Companilactobacillus futsaii +Lactobacillus fuyuanensis,species,Levilactobacillus fuyuanensis +Lactobacillus gannanensis,species,Lapidilactobacillus gannanensis +Lactobacillus garii,species,Lactiplantibacillus garii +Lactobacillus gastricus,species,Limosilactobacillus gastricus +Lactobacillus ghanensis,species,Liquorilactobacillus ghanensis +Lactobacillus gorillae,species,Limosilactobacillus gorillae +Lactobacillus graminis,species,Latilactobacillus graminis +Lactobacillus halodurans,species,Companilactobacillus halodurans +Lactobacillus halotolerans,species,Weissella halotolerans +Lactobacillus hammesii,species,Levilactobacillus hammesii +Lactobacillus harbinensis,species,Schleiferilactobacillus harbinensis +Lactobacillus hayakitensis,species,Ligilactobacillus hayakitensis +Lactobacillus hegangensis,species,Lacticaseibacillus hegangensis +Lactobacillus heilongjiangensis,species,Companilactobacillus heilongjiangensis +Lactobacillus herbarum,species,Lactiplantibacillus herbarum +Lactobacillus heterohiochii,species,Fructilactobacillus fructivorans +Lactobacillus hilgardii,species,Lentilactobacillus hilgardii +Lactobacillus hokkaidonensis,species,Paucilactobacillus hokkaidonensis +Lactobacillus homohiochii,species,Fructilactobacillus fructivorans +Lactobacillus hordei,species,Liquorilactobacillus hordei +Lactobacillus huachuanensis,species,Companilactobacillus huachuanensis +Lactobacillus huananensis,species,Levilactobacillus huananensis +Lactobacillus hulanensis,species,Lacticaseibacillus hulanensis +Lactobacillus hulinensis,species,Companilactobacillus hulinensis +Lactobacillus ingluviei,species,Limosilactobacillus ingluviei +Lactobacillus insicii,species,Companilactobacillus insicii +Lactobacillus iwatensis,species,Loigolactobacillus iwatensis +Lactobacillus ixorae,species,Fructilactobacillus ixorae +Lactobacillus jiayinensis,species,Loigolactobacillus jiayinensis +Lactobacillus jidongensis,species,Companilactobacillus jidongensis +Lactobacillus jixianensis,species,Lacticaseibacillus jixianensis +Lactobacillus kaifaensis,species,Paucilactobacillus kaifaensis +Lactobacillus kandleri,species,Weissella kandleri +Lactobacillus kedongensis,species,Companilactobacillus kedongensis +Lactobacillus kefir,species,Lentilactobacillus kefiri +Lactobacillus kefirgranum,species,Lactobacillus kefiranofaciens subsp. kefirgranum +Lactobacillus kefiri,species,Lentilactobacillus kefiri +Lactobacillus keshanensis,species,Companilactobacillus keshanensis +Lactobacillus kimchicus,species,Secundilactobacillus kimchicus +Lactobacillus kimchiensis,species,Companilactobacillus kimchiensis +Lactobacillus kimchii,species,Companilactobacillus kimchii +Lactobacillus kisonensis,species,Lentilactobacillus kisonensis +Lactobacillus koreensis,species,Levilactobacillus koreensis +Lactobacillus kosoi,species,Apilactobacillus micheneri +Lactobacillus kunkeei,species,Apilactobacillus kunkeei +Lactobacillus lactis,species,Lactobacillus delbrueckii subsp. lactis +Lactobacillus lindianensis,species,Levilactobacillus lindianensis +Lactobacillus lindneri,species,Fructilactobacillus lindneri +Lactobacillus malefermentans,species,Secundilactobacillus malefermentans +Lactobacillus mali,species,Liquorilactobacillus mali +Lactobacillus maltaromaticus,species,Carnobacterium maltaromaticum +Lactobacillus maltaromicus,species,Carnobacterium maltaromaticum +Lactobacillus manihotivorans,species,Lacticaseibacillus manihotivorans +Lactobacillus mellifer,species,Bombilactobacillus mellifer +Lactobacillus mellis,species,Bombilactobacillus mellis +Lactobacillus metriopterae,species,Companilactobacillus metriopterae +Lactobacillus micheneri,species,Apilactobacillus micheneri +Lactobacillus mindensis,species,Companilactobacillus mindensis +Lactobacillus minor,species,Weissella minor +Lactobacillus minutus,species,Atopobium minutum +Lactobacillus mishanensis,species,Companilactobacillus mishanensis +Lactobacillus mixtipabuli,species,Secundilactobacillus mixtipabuli +Lactobacillus modestisalitolerans,species,Lactiplantibacillus modestisalitolerans +Lactobacillus mucosae,species,Limosilactobacillus mucosae +Lactobacillus mudanjiangensis,species,Lactiplantibacillus mudanjiangensis +Lactobacillus mulanensis,species,Lapidilactobacillus mulanensis +Lactobacillus mulengensis,species,Levilactobacillus mulengensis +Lactobacillus murinus,species,Ligilactobacillus murinus +Lactobacillus musae,species,Companilactobacillus musae +Lactobacillus nagelii,species,Liquorilactobacillus nagelii +Lactobacillus namurensis,species,Levilactobacillus namurensis +Lactobacillus nangangensis,species,Lactiplantibacillus nangangensis +Lactobacillus nantensis,species,Companilactobacillus nantensis +Lactobacillus nasuensis,species,Lacticaseibacillus nasuensis +Lactobacillus nenjiangensis,species,Paucilactobacillus nenjiangensis +Lactobacillus nodensis,species,Companilactobacillus nodensis +Lactobacillus nuruki,species,Companilactobacillus nuruki +Lactobacillus odoratitofui,species,Secundilactobacillus odoratitofui +Lactobacillus oeni,species,Liquorilactobacillus oeni +Lactobacillus oligofermentans,species,Paucilactobacillus oligofermentans +Lactobacillus oris,species,Limosilactobacillus oris +Lactobacillus oryzae,species,Secundilactobacillus oryzae +Lactobacillus otakiensis,species,Lentilactobacillus otakiensis +Lactobacillus ozensis,species,Apilactobacillus ozensis +Lactobacillus panis,species,Limosilactobacillus panis +Lactobacillus pantheris,species,Lacticaseibacillus pantheris +Lactobacillus parabrevis,species,Levilactobacillus parabrevis +Lactobacillus parabuchneri,species,Lentilactobacillus parabuchneri +Lactobacillus paracasei,species,Lacticaseibacillus paracasei +Lactobacillus paracollinoides,species,Secundilactobacillus paracollinoides +Lactobacillus parafarraginis,species,Lentilactobacillus parafarraginis +Lactobacillus parakefir,species,Lentilactobacillus parakefiri +Lactobacillus parakefiri,species,Lentilactobacillus parakefiri +Lactobacillus paralimentarius,species,Companilactobacillus paralimentarius +Lactobacillus paraplantarum,species,Lactiplantibacillus paraplantarum +Lactobacillus paucivorans,species,Levilactobacillus paucivorans +Lactobacillus pentosiphilus,species,Secundilactobacillus pentosiphilus +Lactobacillus pentosus,species,Lactiplantibacillus pentosus +Lactobacillus perolens,species,Schleiferilactobacillus perolens +Lactobacillus pingfangensis,species,Lactiplantibacillus pingfangensis +Lactobacillus piscicola,species,Carnobacterium maltaromaticum +Lactobacillus plajomi,species,Lactiplantibacillus plajomi +Lactobacillus plantarum,species,Lactiplantibacillus plantarum +Lactobacillus pobuzihii,species,Ligilactobacillus pobuzihii +Lactobacillus pontis,species,Limosilactobacillus pontis +Lactobacillus porcinae,species,Lacticaseibacillus porcinae +Lactobacillus quenuiae,species,Apilactobacillus quenuiae +Lactobacillus rapi,species,Lentilactobacillus rapi +Lactobacillus rennini,species,Loigolactobacillus rennini +Lactobacillus reuteri,species,Limosilactobacillus reuteri +Lactobacillus rimae,species,Lancefieldella rimae +Lactobacillus rossiae,species,Furfurilactobacillus rossiae +Lactobacillus rossii,species,Furfurilactobacillus rossiae +Lactobacillus ruminis,species,Ligilactobacillus ruminis +Lactobacillus saerimneri,species,Ligilactobacillus saerimneri +Lactobacillus sake,species,Latilactobacillus sakei +Lactobacillus sakei,species,Latilactobacillus sakei +Lactobacillus salitolerans,species,Ligilactobacillus salitolerans +Lactobacillus salivarius,species,Ligilactobacillus salivarius +Lactobacillus salsicarnum,species,Companilactobacillus mishanensis +Lactobacillus sanfranciscensis,species,Fructilactobacillus sanfranciscensis +Lactobacillus sanfrancisco,species,Fructilactobacillus sanfranciscensis +Lactobacillus saniviri,species,Lacticaseibacillus saniviri +Lactobacillus satsumensis,species,Liquorilactobacillus satsumensis +Lactobacillus secaliphilus,species,Limosilactobacillus secaliphilus +Lactobacillus selangorensis,species,Paralactobacillus selangorensis +Lactobacillus senioris,species,Lentilactobacillus senioris +Lactobacillus senmaizukei,species,Levilactobacillus senmaizukei +Lactobacillus sharpeae,species,Lacticaseibacillus sharpeae +Lactobacillus shenzhenensis,species,Schleiferilactobacillus shenzhenensis +Lactobacillus sicerae,species,Liquorilactobacillus sicerae +Lactobacillus silagei,species,Secundilactobacillus silagei +Lactobacillus silagincola,species,Secundilactobacillus silagincola +Lactobacillus siliginis,species,Furfurilactobacillus siliginis +Lactobacillus similis,species,Secundilactobacillus similis +Lactobacillus sobrius,species,Lactobacillus amylovorus +Lactobacillus songbeiensis,species,Lactiplantibacillus songbeiensis +Lactobacillus songhuajiangensis,species,Lacticaseibacillus songhuajiangensis +Lactobacillus spicheri,species,Levilactobacillus spicheri +Lactobacillus suantsaicola,species,Companilactobacillus suantsaicola +Lactobacillus suantsaii,species,Levilactobacillus suantsaii +Lactobacillus suantsaiihabitans,species,Levilactobacillus suantsaiihabitans +Lactobacillus sucicola,species,Liquorilactobacillus sucicola +Lactobacillus suebicus,species,Paucilactobacillus suebicus +Lactobacillus suibinensis,species,Lacticaseibacillus suibinensis +Lactobacillus sunkii,species,Lentilactobacillus sunkii +Lactobacillus suntoryeus,species,Lactobacillus helveticus +Lactobacillus tangyuanensis,species,Levilactobacillus tangyuanensis +Lactobacillus terrae,species,Companilactobacillus metriopterae +Lactobacillus thailandensis,species,Lacticaseibacillus thailandensis +Lactobacillus thermotolerans,species,Limosilactobacillus ingluviei +Lactobacillus timberlakei,species,Apilactobacillus timberlakei +Lactobacillus tongjiangensis,species,Levilactobacillus tongjiangensis +Lactobacillus trichodes,species,Fructilactobacillus fructivorans +Lactobacillus tucceti,species,Companilactobacillus tucceti +Lactobacillus uli,species,Olsenella uli +Lactobacillus uvarum,species,Liquorilactobacillus uvarum +Lactobacillus vaccinostercus,species,Paucilactobacillus vaccinostercus +Lactobacillus vaginalis,species,Limosilactobacillus vaginalis +Lactobacillus versmoldensis,species,Companilactobacillus versmoldensis +Lactobacillus vespulae,species,Fructilactobacillus vespulae +Lactobacillus vini,species,Liquorilactobacillus vini +Lactobacillus viridescens,species,Weissella viridescens +Lactobacillus vitulinus,species,Kandleria vitulina +Lactobacillus wasatchensis,species,Paucilactobacillus wasatchensis +Lactobacillus wuchangensis,species,Lapidilactobacillus wuchangensis +Lactobacillus xiangfangensis,species,Lactiplantibacillus xiangfangensis +Lactobacillus xylosus,species,Lactococcus lactis +Lactobacillus yamanashiensis,species,Liquorilactobacillus mali +Lactobacillus yichunensis,species,Lacticaseibacillus yichunensis +Lactobacillus yilanensis,species,Agrilactobacillus yilanensis +Lactobacillus yonginensis,species,Levilactobacillus yonginensis +Lactobacillus zeae,species,Lacticaseibacillus zeae +Lactobacillus zhachilii,species,Companilactobacillus zhachilii +Lactobacillus zhaodongensis,species,Lacticaseibacillus zhaodongensis +Lactobacillus zhaoyuanensis,species,Loigolactobacillus zhaoyuanensis +Lactobacillus zhongbaensis,species,Companilactobacillus zhongbaensis +Lactobacillus zymae,species,Levilactobacillus zymae +Lactococcus carnosus,species,Pseudolactococcus carnosus +Lactococcus chungangensis,species,Pseudolactococcus chungangensis +Lactococcus hodotermopsidis,species,Pseudolactococcus hodotermopsidis +Lactococcus insecticola,species,Pseudolactococcus insecticola +Lactococcus intestinalis,species,Lactococcus muris +Lactococcus laudensis,species,Pseudolactococcus laudensis +Lactococcus paracarnosus,species,Pseudolactococcus paracarnosus +Lactococcus piscium,species,Pseudolactococcus piscium +Lactococcus plantarum,species,Pseudolactococcus plantarum +Lactococcus raffinolactis,species,Pseudolactococcus raffinolactis +Lactosphaera pasteurii,species,Trichococcus pasteurii +Lactosphaera,genus,Trichococcus +Larkinella roseus,species,Larkinella rosea +Leadbettera azotonutricia,species,Treponema azotonutricium +Leadbettera,genus,Treponema +Lechevalieria aerocolonigenes,species,Lentzea aerocolonigenes +Lechevalieria atacamensis,species,Lentzea atacamensis +Lechevalieria deserti,species,Lentzea atacamensis +Lechevalieria flava,species,Lentzea flava +Lechevalieria fradiae,species,Lentzea fradiae +Lechevalieria nigeriaca,species,Lentzea nigeriaca +Lechevalieria rhizosphaerae,species,Lentzea rhizosphaerae +Lechevalieria roselyniae,species,Lentzea roselyniae +Lechevalieria xinjiangensis,species,Lentzea xinjiangensis +Lechevalieria,genus,Lentzea +Lederbergia galactosidilyticus,species,Lederbergia galactosidilytica +Lederbergia lentus,species,Lederbergia lenta +Legionella bozemanii,species,Legionella bozemanae +Legionella pittsburghensis,species,Legionella micdadei +Leifsonia aurea,species,Rhodoglobus aureus +Leifsonia bigeumensis,species,Leifsonella bigeumensis +Leifsonia cynodontis,species,Leifsonia xyli subsp. cynodontis +Leifsonia flava,species,Orlajensenia leifsoniae +Leifsonia ginsengi,species,Herbiconiux ginsengi +Leifsonia kribbensis,species,Pseudolysinimonas kribbensis +Leifsonia pindariensis,species,Microterricola pindariensis +Leisingera nanhaiensis,species,Sedimentitalea nanhaiensis +Lelliottia aquatilis,species,Lelliottia jeotgali +Lentilactobacillus dabitei,species,Lentilactobacillus rapi subsp. dabitei +Lentzea deserti,species,Lentzea atacamensis +Lentzea violacea,species,Lentzea albidocapillata subsp. violacea +Leptospira dzianensis,species,Leptospira yasudae +Leptospira koniamboensis,species,Leptospira koniambonensis +Leptospira parva,species,Turneriella parva +Leptospira putramalaysiae,species,Leptospira stimsonii +Leptothrix mobilis,species,Sphaerotilus mobilis +Leptotrichia goodfellowii,species,Pseudoleptotrichia goodfellowii +Leuconostoc amelibiosum,species,Leuconostoc citreum +Leuconostoc argentinum,species,Leuconostoc lactis +Leuconostoc cremoris,species,Leuconostoc mesenteroides subsp. cremoris +Leuconostoc dextranicum,species,Leuconostoc mesenteroides subsp. dextranicum +Leuconostoc dextranicus,species,Leuconostoc mesenteroides subsp. dextranicum +Leuconostoc durionis,species,Fructobacillus durionis +Leuconostoc ficulneum,species,Fructobacillus ficulneus +Leuconostoc fructosum,species,Fructobacillus fructosus +Leuconostoc oeni,species,Oenococcus oeni +Leuconostoc oenos,species,Oenococcus oeni +Leuconostoc paramesenteroides,species,Weissella paramesenteroides +Leuconostoc pseudoficulneum,species,Fructobacillus pseudoficulneus +Levilactobacillus suantsaiihabitans,species,Levilactobacillus suantsaiihabitans +Levinea amalonatica,species,Citrobacter amalonaticus +Levinea malonatica,species,Citrobacter koseri +Levinea,genus,Citrobacter +Lewinella nigricans,species,Flavilitoribacter nigricans +Leyella lascolaii,species,Prevotella lascolaii +Leyella stercorea,species,Prevotella stercorea +Leyella,genus,Prevotella +Libanicoccus massiliensis,species,Parolsenella massiliensis +Libanicoccus,genus,Parolsenella +Lichenibacterium minor,species,Lichenibacterium minus +Listeria denitrificans,species,Jonesia denitrificans +Listonella anguillara,species,Listonella anguillarum +Listonella damsela,species,Photobacterium damselae +Listonella damselae,species,Photobacterium damselae +Litchfieldella anticariensis,species,Halomonas anticariensis +Litchfieldella qijiaojingensis,species,Halomonas qijiaojingensis +Litchfieldella rifensis,species,Halomonas rifensis +Litchfieldella xinjiangensis,species,Halomonas xinjiangensis +Litchfieldella,genus,Halomonas +Litchfieldia luteola,species,Cytobacillus luteolus +Litchfieldia salsus,species,Litchfieldia salsa +Litchfieldia sinesaloumensis,species,Bacillus sinesaloumensis +Litchfieldia suaedae,species,Cytobacillus suaedae +Litoribacter alkaliphilus,species,Litoribacter ruber +Litoricola lipolytica,species,Litorivicinus lipolyticus +Litoricola marina,species,Litorivicinus marinus +Litoricola,genus,Litorivicinus +Loktanella acticola,species,Yoonia acticola +Loktanella aestuariicola,species,Limimaricola aestuariicola +Loktanella cinnabarina,species,Limimaricola cinnabarinus +Loktanella hongkongensis,species,Limimaricola hongkongensis +Loktanella koreensis,species,Cognatiyoonia koreensis +Loktanella litorea,species,Yoonia litorea +Loktanella maricola,species,Yoonia maricola +Loktanella marina,species,Flavimaricola marinus +Loktanella maritima,species,Yoonia maritima +Loktanella ponticola,species,Yoonia ponticola +Loktanella pyoseonensis,species,Limimaricola pyoseonensis +Loktanella rosea,species,Yoonia rosea +Loktanella sediminilitoris,species,Yoonia sediminilitoris +Loktanella sediminum,species,Cognatiyoonia sediminum +Loktanella soesokkakensis,species,Limimaricola soesokkakensis +Loktanella tamlensis,species,Yoonia tamlensis +Loktanella variabilis,species,Limimaricola variabilis +Loktanella vestfoldensis,species,Yoonia vestfoldensis +Lolliginicoccus levis,species,Hoyosella levis +Lucibacterium harveyi,species,Vibrio harveyi +Lucibacterium,genus,Vibrio +Luteimonas tolerans,species,Lysobacter tolerans +Luteovulum alkalitolerans,species,Cereibacter alkalitolerans +Luteovulum azotoformans,species,Cereibacter azotoformans +Luteovulum johrii,species,Cereibacter johrii +Luteovulum ovatum,species,Cereibacter ovatus +Luteovulum sphaeroides,species,Cereibacter sphaeroides +Luteovulum,genus,Cereibacter +Lwoffella lincolnii,species,Moraxella lincolnii +Lwoffella,genus,Moraxella +Lysinibacillus acetophenoni,species,Ureibacillus acetophenoni +Lysinibacillus chungkukjangi,species,Ureibacillus chungkukjangi +Lysinibacillus endophyticus,species,Ureibacillus endophyticus +Lysinibacillus manganicus,species,Ureibacillus manganicus +Lysinibacillus mangiferahumi,species,Lysinibacillus sphaericus +Lysinibacillus mangiferihumi,species,Lysinibacillus sphaericus +Lysinibacillus massiliensis,species,Ureibacillus massiliensis +Lysinibacillus meyeri,species,Metasolibacillus meyeri +Lysinibacillus sinduriensis,species,Ureibacillus sinduriensis +Lysinibacillus tabacifolii,species,Lysinibacillus sphaericus +Lysinibacillus varians,species,Lysinibacillus sphaericus +Lysinibacillus yapensis,species,Ureibacillus yapensis +Lysinimicrobium aestuarii,species,Demequina maris +Lysinimicrobium flavum,species,Demequina phytophila +Lysinimicrobium gelatinilyticum,species,Demequina gelatinilytica +Lysinimicrobium iriomotense,species,Demequina iriomotensis +Lysinimicrobium luteum,species,Demequina silvatica +Lysinimicrobium mangrovi,species,Demequina mangrovi +Lysinimicrobium pelophilum,species,Demequina pelophila +Lysinimicrobium rhizosphaerae,species,Demequina rhizosphaerae +Lysinimicrobium sediminis,species,Demequina sediminis +Lysinimicrobium soli,species,Demequina soli +Lysinimicrobium subtropicum,species,Demequina subtropica +Lysinimicrobium,genus,Demequina +Lysinimonas kribbensis,species,Pseudolysinimonas kribbensis +Lysinimonas yzui,species,Pseudolysinimonas yzui +Lysobacter panaciterrae,species,Luteimonas panaciterrae +Lysobacter thermophilus,species,Vulcaniibacterium thermophilum +Lysobacter tyrosinelyticus,species,Lysobacter tyrosinilyticus +Mabikibacter ruber,species,Notoacmeibacter marinus +Mabikibacter,genus,Notoacmeibacter +Macrococcoides bohemicum,species,Macrococcus bohemicus +Macrococcoides bohemicus,species,Macrococcus bohemicus +Macrococcoides canis,species,Macrococcus canis +Macrococcoides caseolyticum,species,Macrococcus caseolyticus +Macrococcoides caseolyticus,species,Macrococcus caseolyticus +Macrococcoides goetzii,species,Macrococcus goetzii +Macrococcoides,genus,Macrococcus +Macromonas mobile,species,Macromonas mobilis +Magnetospirillum bellicus,species,Magnetospirillum bellicum +Malaciobacter canalis,species,Arcobacter canalis +Malaciobacter halophilus,species,Arcobacter halophilus +Malaciobacter marinus,species,Arcobacter marinus +Malaciobacter molluscorum,species,Arcobacter molluscorum +Malaciobacter mytili,species,Arcobacter mytili +Malaciobacter pacificus,species,Arcobacter pacificus +Malaciobacter,genus,Arcobacter +Malacobacter canalis,species,Arcobacter canalis +Malacobacter halophilus,species,Arcobacter halophilus +Malacobacter marinus,species,Arcobacter marinus +Malacobacter molluscorum,species,Arcobacter molluscorum +Malacobacter mytili,species,Arcobacter mytili +Malacobacter pacificus,species,Arcobacter pacificus +Malacobacter,genus,Arcobacter +Mameliella atlantica,species,Mameliella alba +Mameliella phaeodactyli,species,Mameliella alba +Mammaliicoccus fleurettii,species,Staphylococcus fleurettii +Mammaliicoccus lentus,species,Staphylococcus lentus +Mammaliicoccus sciuri,species,Staphylococcus sciuri +Mammaliicoccus stepanovicii,species,Staphylococcus stepanovicii +Mammaliicoccus vitulinus,species,Staphylococcus vitulinus +Mammaliicoccus,genus,Staphylococcus +Mannheimia ovis,species,Mannheimia pernigra +Margalitia camelliae,species,Heyndrickxia camelliae +Margalitia shackletonii,species,Heyndrickxia shackletonii +Margalitia,genus,Heyndrickxia +Maribaculum marinum,species,Henriciella aquimarina +Maribaculum,genus,Henriciella +Maribius pelagius,species,Palleronia pelagia +Maribius pontilimi,species,Palleronia pontilimi +Maribius salinus,species,Palleronia salina +Maribius,genus,Palleronia +Marichromatium fluminis,species,Phaeochromatium fluminis +Marilutibacter aestuarii,species,Lysobacter aestuarii +Marilutibacter alkalisoli,species,Lysobacter alkalisoli +Marilutibacter maris,species,Lysobacter maris +Marilutibacter penaei,species,Lysobacter penaei +Marilutibacter spongiae,species,Lysobacter spongiae +Marilutibacter,genus,Lysobacter +Marinibacillus campisalis,species,Jeotgalibacillus campisalis +Marinibacillus marinus,species,Jeotgalibacillus marinus +Marinibacillus,genus,Jeotgalibacillus +Marinicaulis aureum,species,Hyphococcus aureus +Marinicaulis aureus,species,Hyphococcus aureus +Marinicaulis flavus,species,Hyphococcus luteus +Marinicaulis,genus,Hyphococcus +Marinicola seohaensis,species,Roseivirga ehrenbergii +Marinicola,genus,Roseivirga +Marinilabilia agarovorans,species,Marinilabilia salmonicolor +Marinisubtilis pacificus,species,Microcella pacifica +Marinisubtilis,genus,Microcella +Marinivirga aestuarii,species,Hyunsoonleella aestuarii +Marinivirga,genus,Hyunsoonleella +Marinobacter aquaeolei,species,Marinobacter nauticus +Marinobacter hydrocarbonoclasticus,species,Marinobacter nauticus +Marinobacter piscensis,species,Marinobacter piscis +Marinobacter suadae,species,Marinobacter suaedae +Marinobacterium georgiense,species,Marinobacterium iners +Marinococcus albus,species,Salimicrobium album +Marinococcus hispanicus,species,Salinicoccus hispanicus +Marinomonas aquamarina,species,Marinomonas aquimarina +Marinomonas basaltis,species,Marinomonas communis +Marinomonas vaga,species,Oceanospirillum vagum +Maripseudobacter aurantiacus,species,Maribacter aurantiacus +Maripseudobacter,genus,Maribacter +Marivirga salinae,species,Marivirga salinarum +Marivivens marinum,species,Marivivens marinus +Markus hominis,species,Markusia hominis +Markus,genus,Markusia +Marmoricola aequoreus,species,Nocardioides aequoreus +Marmoricola aquaticus,species,Nocardioides marmoraquaticus +Marmoricola aurantiacus,species,Nocardioides aurantiacus +Marmoricola bigeumensis,species,Nocardioides marmoribigeumensis +Marmoricola caldifontis,species,Nocardioides caldifontis +Marmoricola ginsengisoli,species,Nocardioides marmoriginsengisoli +Marmoricola korecus,species,Nocardioides korecus +Marmoricola mangrovicus,species,Nocardioides mangrovicus +Marmoricola pocheonensis,species,Nocardioides pocheonensis +Marmoricola scoriae,species,Nocardioides scoriae +Marmoricola solisilvae,species,Nocardioides marmorisolisilvae +Marmoricola terrae,species,Nocardioides marmoriterrae +Marmoricola,genus,Nocardioides +Marortus luteolus,species,Zhongshania marina +Marortus,genus,Zhongshania +Massilia arenosa,species,Zemynaea arenosa +Megamonas hypermegas,species,Megamonas hypermegale +Meganema perideroedes,species,Neomegalonema perideroedes +Meganema,genus,Neomegalonema +Megasphaera butyrica,species,Megasphaera stantonii +Megasphaera intestinihominis,species,Megasphaera indica +Meiothermus chliarophilus,species,Calidithermus chliarophilus +Meiothermus roseus,species,Calidithermus roseus +Meiothermus silvanus,species,Allomeiothermus silvanus +Meiothermus terrae,species,Calidithermus terrae +Meiothermus timidus,species,Calidithermus timidus +Melisococcus plutonis,species,Melissococcus plutonius +Melisococcus plutonius,species,Melissococcus plutonius +Melisococcus,genus,Melissococcus +Melissococcus pluton,species,Melissococcus plutonius +Melitea salexigens,species,Spongiibacter marinus +Melitea,genus,Neomelitea +Membranicola marinus,species,Membranihabitans marinus +Membranicola,genus,Membranihabitans +Mesocryomonas glaciei,species,Aureimonas glaciei +Mesocryomonas,genus,Aureimonas +Mesoflavibacter aestuarii,species,Aurantibacter aestuarii +Mesoflavibacter sabulilitoris,species,Mesoflavibacter zeaxanthinifaciens subsp. sabulilitoris +Mesomycoplasma molaris,species,Mesomycoplasma molare +Mesonia maritimus,species,Mesonia maritima +Mesoplasma pleciae,species,Acholeplasma pleciae +Mesorhizobium carbonis,species,Aquibium carbonis +Mesorhizobium composti,species,Ollibium composti +Mesorhizobium ephedrae,species,Kumtagia ephedrae +Mesorhizobium microcysteis,species,Neoaquamicrobium microcysteis +Mesorhizobium oceanicum,species,Aquibium oceanicum +Mesorhizobium sediminum,species,Neoaquamicrobium sediminum +Mesorhizobium terrae,species,Terribium terrae +Metakosakonia massiliensis,species,Phytobacter massiliensis +Metakosakonia,genus,Phytobacter +Metapseudomonas boanensis,species,Pseudomonas boanensis +Metapseudomonas furukawaii,species,Pseudomonas furukawaii +Metapseudomonas lalkuanensis,species,Pseudomonas lalkuanensis +Metapseudomonas otitidis,species,Pseudomonas otitidis +Metapseudomonas resinovorans,species,Pseudomonas resinovorans +Metapseudomonas,genus,Pseudomonas +Metascardovia criceti,species,Alloscardovia criceti +Metascardovia,genus,Alloscardovia +Methanobacterium arbophilicum,species,Methanobrevibacter arboriphilicus +Methanobacterium arboriphilicum,species,Methanobrevibacter arboriphilicus +Methanobacterium defluvii,species,Methanothermobacter defluvii +Methanobacterium mobile,species,Methanomicrobium mobile +Methanobacterium mobilis,species,Methanomicrobium mobile +Methanobacterium ruminantium,species,Methanobrevibacter ruminantium +Methanobacterium thermalcaliphilum,species,Methanothermobacter thermautotrophicus +Methanobacterium thermautotrophicum,species,Methanothermobacter thermautotrophicus +Methanobacterium thermoaggregans,species,Methanobacterium thermaggregans +Methanobacterium thermoalcaliphilum,species,Methanothermobacter thermautotrophicus +Methanobacterium thermoautotrophicum,species,Methanothermobacter thermautotrophicus +Methanobacterium thermoautotrophicus,species,Methanothermobacter thermautotrophicus +Methanobacterium thermoflexum,species,Methanothermobacter thermoflexus +Methanobacterium thermoformicicum,species,Methanothermobacter thermautotrophicus +Methanobacterium thermophilum,species,Methanothermobacter thermophilus +Methanobacterium wolfei,species,Methanothermobacter wolfei +Methanobrevibacter arboriphilus,species,Methanobrevibacter arboriphilicus +Methanococcus deltae,species,Methanococcus maripaludis +Methanococcus fervens,species,Methanocaldococcus fervens +Methanococcus frisius,species,Methanosarcina mazei +Methanococcus halophilus,species,Methanohalophilus halophilus +Methanococcus igneus,species,Methanotorris igneus +Methanococcus infernus,species,Methanocaldococcus infernus +Methanococcus jannaschii,species,Methanocaldococcus jannaschii +Methanococcus mazei,species,Methanosarcina mazei +Methanococcus thermolithotrophicus,species,Methanothermococcus thermolithotrophicus +Methanococcus vulcanius,species,Methanocaldococcus vulcanius +Methanocorpusculum parvum,species,Methanocorpusculum aggregans +Methanoculleus bourgense,species,Methanoculleus bourgensis +Methanoculleus oldenburgensis,species,Methanoculleus bourgensis +Methanoculleus olentangyi,species,Methanoculleus bourgensis +Methanoculleus thermophilicus,species,Methanoculleus thermophilus +Methanogenium aggregans,species,Methanocorpusculum aggregans +Methanogenium bourgense,species,Methanoculleus bourgensis +Methanogenium frittonii,species,Methanoculleus thermophilus +Methanogenium liminatans,species,Methanofollis liminatans +Methanogenium marisnigri,species,Methanoculleus marisnigri +Methanogenium olentangyi,species,Methanoculleus bourgensis +Methanogenium tatii,species,Methanofollis tationis +Methanogenium tationis,species,Methanofollis tationis +Methanogenium thermophilicum,species,Methanoculleus thermophilus +Methanohalobium evestigatus,species,Methanohalobium evestigatum +Methanohalophilus oregonense,species,Methanolobus oregonensis +Methanohalophilus oregonensis,species,Methanolobus oregonensis +Methanohalophilus zhilinae,species,Methanosalsum zhilinae +Methanolobus siciliae,species,Methanosarcina siciliae +Methanomicrobium antiquum,species,Methanoeremita antiquus +Methanomicrobium paynteri,species,Methanolacinia paynteri +Methanomicrococcus blatticola,species,Methanimicrococcus blatticola +Methanomicrococcus,genus,Methanimicrococcus +Methanoplanus petrolearius,species,Methanolacinia petrolearia +Methanosaeta concilii,species,Methanothrix soehngenii +Methanosaeta harundinacea,species,Methanothrix harundinacea +Methanosaeta thermoacetophila,species,Methanothrix thermoacetophila +Methanosaeta thermophila,species,Methanothrix thermoacetophila +Methanosaeta,genus,Methanothrix +Methanosarcina frisia,species,Methanosarcina mazei +Methanosarcina mazeii,species,Methanosarcina mazei +Methanosphaera stadtmaniae,species,Methanosphaera stadtmanae +Methanospirillum hungatii,species,Methanospirillum hungatei +Methanothermobacter wolfeii,species,Methanothermobacter wolfei +Methanothrix concilii,species,Methanothrix soehngenii +Methanothrix thermoacetophilia,species,Methanothrix thermoacetophila +Methanothrix thermophila,species,Methanothrix thermoacetophila +Methylibium aquaticum,species,Piscinibacter aquaticus +Methylibium fulvum,species,Rhizobacter fulvus +Methylibium subsaxonicum,species,Rivibacter subsaxonicus +Methylobacter agilis,species,Methylomicrobium agile +Methylobacter albus,species,Methylomicrobium album +Methylobacter pelagicus,species,Methylomicrobium pelagicum +Methylobacterium aminovorans,species,Methylorubrum aminovorans +Methylobacterium chloromethanicum,species,Methylobacterium dichloromethanicum subsp. chloromethanicum +Methylobacterium extorquens,species,Methylorubrum extorquens +Methylobacterium lusitanum,species,Methylorubrum rhodesianum +Methylobacterium planium,species,Methylobacterium planeticum +Methylobacterium podarium,species,Methylorubrum podarium +Methylobacterium populi,species,Methylorubrum populi +Methylobacterium pseudosasae,species,Methylorubrum pseudosasae +Methylobacterium rhodesianum,species,Methylorubrum rhodesianum +Methylobacterium rhodinum,species,Methylorubrum rhodinum +Methylobacterium salsuginis,species,Methylorubrum salsuginis +Methylobacterium suomiense,species,Methylorubrum suomiense +Methylobacterium thiocyanatum,species,Methylorubrum thiocyanatum +Methylobacterium zatmanii,species,Methylorubrum zatmanii +Methylococcus bovis,species,Methylobacter luteus +Methylococcus chroococcus,species,Methylobacter whittenburyi +Methylococcus luteus,species,Methylobacter luteus +Methylococcus vinelandii,species,Methylobacter whittenburyi +Methylococcus whittenburyi,species,Methylobacter whittenburyi +Methylocystis parvus,species,Methylocystis parva +Methylomicrobium alcaliphilum,species,Methylotuvimicrobium alcaliphilum +Methylomicrobium kenyense,species,Methylotuvimicrobium kenyense +Methylomonas pelagica,species,Methylomicrobium pelagicum +Methylophaga murata,species,Methylophaga muralis +Methylophaga thiooxidans,species,Methylophaga thiooxydans +Methylophilus leisingerii,species,Methylophilus leisingeri +Methylopila helvetica,species,Albibacter helveticus +Methylopila henanense,species,Methylopila henanensis +Methylopila turkiensis,species,Methylopila turkensis +Methylorhabdus multivorans,species,Ancylobacter multivorans +Methylorhabdus,genus,Ancylobacter +Methylosarcina lacus,species,Methylomicrobium lacus +Methyloterrigena soli,species,Paradevosia shaoguanensis +Methyloterrigena,genus,Paradevosia +Microbacterium albopurpureum,species,Microbacterium albipurpureum +Microbacterium chocolatum,species,Microbacterium aurantiacum +Microbacterium deferre,species,Microbacterium deferens +Microbacterium ihumii,species,Microbacterium tenebrionis +Microbacterium ketosireducens,species,Microbacterium terrae +Microbacterium kitamiense,species,Microbacterium aurantiacum +Microbacterium kunmingensis,species,Microbacterium kunmingense +Microbacterium marinotypicum,species,Microbacterium maritypicum +Microbacterium rhizophilus,species,Microbacterium rhizophilum +Microbacterium terricolae,species,Microbacterium terricola +Microbispora aerata,species,Microbispora rosea subsp. aerata +Microbispora aerata,species,Microbispora rosea subsp. aerata +Microbispora amethystogenes,species,Microbispora rosea +Microbispora bispora,species,Thermobispora bispora +Microbispora camponoti,species,Microbispora bryophytorum subsp. camponoti +Microbispora chromogenes,species,Microbispora rosea +Microbispora diastatica,species,Microbispora rosea +Microbispora echinospora,species,Thermomonospora echinospora +Microbispora fusca,species,Microbispora triticiradicis +Microbispora indica,species,Microbispora rosea +Microbispora karnatakensis,species,Microbispora rosea +Microbispora mesophila,species,Sphaerimonospora mesophila +Microbispora parva,species,Microbispora rosea +Microbispora thailandensis,species,Sphaerimonospora thailandensis +Microbispora thermodiastatica,species,Microbispora rosea subsp. aerata +Microbispora thermorosea,species,Microbispora rosea subsp. aerata +Microbispora viridis,species,Actinomadura rugatobispora +Micrococcus agilis,species,Arthrobacter agilis +Micrococcus aloeverae,species,Micrococcus luteus +Micrococcus halobius,species,Nesterenkonia halobia +Micrococcus kristinae,species,Rothia kristinae +Micrococcus lactis,species,Neomicrococcus lactis +Micrococcus nishinomiyaensis,species,Dermacoccus nishinomiyaensis +Micrococcus roseus,species,Kocuria rosea +Micrococcus sedentarius,species,Kytococcus sedentarius +Micrococcus varians,species,Kocuria varians +Micrococcus yunnanensis,species,Micrococcus luteus +Microcyclus aquaticus,species,Ancylobacter aquaticus +Microcyclus,genus,Ancylobacter +Microellobosporia cinerea,species,Streptomyces cinereus +Microellobosporia flavea,species,Streptomyces flaveus +Microellobosporia grisea,species,Streptomyces pseudoechinosporeus +Microellobosporia violacea,species,Streptomyces yerevanensis +Microellobosporia,genus,Streptomyces +Microlunatus spumicolus,species,Microlunatus spumicola +Micromonas micra,species,Parvimonas micra +Micromonas micros,species,Parvimonas micra +Micromonas,genus,Parvimonas +Micromonospora aurantionigra,species,Micromonospora auratinigra +Micromonospora brunnea,species,Micromonospora purpureochromogenes +Micromonospora ferruginea,species,Micromonospora robiginosa +Micromonospora matsumotoense,species,Micromonospora matsumotoensis +Micromonospora panzhihuaensis,species,Micromonospora haikouensis +Micromonospora purpurea,species,Micromonospora echinospora +Micromonospora rhodorangea,species,Micromonospora echinospora +Micropolyspora angiospora,species,Nonomuraea angiospora +Micropolyspora brevicatena,species,Nocardia brevicatena +Micropolyspora faeni,species,Saccharopolyspora rectivirgula +Micropolyspora internata,species,Saccharomonospora viridis +Micropolyspora internatus,species,Saccharomonospora viridis +Micropolyspora rectivirgula,species,Saccharopolyspora rectivirgula +Micropolyspora,genus,Nocardia +Microsphaera multipartita,species,Nakamurella multipartita +Microsphaera,genus,Nakamurella +Microtetraspora africana,species,Nonomuraea africana +Microtetraspora angiospora,species,Nonomuraea angiospora +Microtetraspora fastidiosa,species,Nonomuraea fastidiosa +Microtetraspora ferruginea,species,Nonomuraea ferruginea +Microtetraspora flexuosa,species,Thermopolyspora flexuosa +Microtetraspora helvata,species,Nonomuraea helvata +Microtetraspora polychroma,species,Nonomuraea polychroma +Microtetraspora pusilla,species,Nonomuraea pusilla +Microtetraspora recticatena,species,Nonomuraea recticatena +Microtetraspora roseola,species,Nonomuraea roseola +Microtetraspora roseoviolacea,species,Nonomuraea roseoviolacea +Microtetraspora rubra,species,Nonomuraea rubra +Microtetraspora salmonea,species,Nonomuraea salmonea +Microtetraspora spiralis,species,Nonomuraea spiralis +Microtetraspora turkmeniaca,species,Nonomuraea turkmeniaca +Microtetraspora viridis,species,Actinomadura viridis +Microvenator marinus,species,Allomicrovenator marinus +Microvenator,genus,Allomicrovenator +Miniphocibacter massiliensis,species,Miniphocaeibacter massiliensis +Miniphocibacter,genus,Miniphocaeibacter +Mitsuaria chitinivorans,species,Roseateles chitinivorans +Mitsuaria chitosanitabida,species,Roseateles chitosanitabidus +Mitsuaria noduli,species,Roseateles noduli +Mitsuaria,genus,Roseateles +Mitsuokella dentalis,species,Prevotella dentalis +Mitsuokella multiacidus,species,Mitsuokella multacida +Modestobacter deserti,species,Goekera deserti +Modicisalibacter ilicicola,species,Halomonas ilicicola +Modicisalibacter luteus,species,Halomonas lutea +Modicisalibacter muralis,species,Halomonas muralis +Modicisalibacter radicis,species,Halomonas radicis +Modicisalibacter xianhensis,species,Halomonas xianhensis +Modicisalibacter zincidurans,species,Halomonas zincidurans +Mokoshia antarctica,species,Massilia antarctica +Mokoshia aquatica,species,Massilia aquatica +Mokoshia atriviolacea,species,Massilia atriviolacea +Mokoshia cavernae,species,Massilia cavernae +Mokoshia eurypsychrophila,species,Massilia eurypsychrophila +Mokoshia frigida,species,Massilia frigida +Mokoshia glaciei,species,Massilia glaciei +Mokoshia mucilaginosa,species,Massilia mucilaginosa +Mokoshia polaris,species,Massilia polaris +Mokoshia psychrophila,species,Massilia psychrophila +Mokoshia rubra,species,Massilia rubra +Mokoshia soli,species,Massilia soli +Mokoshia violaceinigra,species,Massilia violaceinigra +Mokoshia,genus,Massilia +Monaibacterium marinum,species,Pontivivens marinum +Monaibacterium,genus,Pontivivens +Monashia flava,species,Intrasporangium flavum +Monashia,genus,Intrasporangium +Montanilutibacter psychrotolerans,species,Lysobacter psychrotolerans +Montanilutibacter,genus,Lysobacter +Moorella caeni,species,Neomoorella caeni +Moorella carbonis,species,Neomoorella carbonis +Moorella glycerini,species,Neomoorella glycerini +Moorella humiferrea,species,Neomoorella humiferrea +Moorella mulderi,species,Neomoorella mulderi +Moorella stamsii,species,Neomoorella stamsii +Moorella sulfitireducens,species,Neomoorella sulfitireducens +Moorella thermoacetica,species,Neomoorella thermoacetica +Moorella thermoautotrophica,species,Neomoorella thermoacetica +Moorella,genus,Neomoorella +Moraxella anatipestifer,species,Riemerella anatipestifera +Moraxella anatipestifera,species,Riemerella anatipestifera +Moraxella phenylpyruvica,species,Psychrobacter phenylpyruvicus +Moraxella urethralis,species,Oligella urethralis +Moraxella veridica,species,Moraxella catarrhalis +Muricauda abyssi,species,Flagellimonas abyssi +Muricauda aequoris,species,Flagellimonas aequoris +Muricauda algicola,species,Flagellimonas algicola +Muricauda alvinocaridis,species,Flagellimonas alvinocaridis +Muricauda amoyensis,species,Flagellimonas amoyensis +Muricauda amphidinii,species,Flagellimonas amphidinii +Muricauda antarctica,species,Flagellimonas taeanensis +Muricauda aquimarina,species,Flagellimonas marinaquae +Muricauda aurantiaca,species,Flagellimonas maritima +Muricauda aurea,species,Flagellimonas aurea +Muricauda beolgyonensis,species,Flagellimonas beolgyonensis +Muricauda chongwuensis,species,Flagellimonas chongwuensis +Muricauda eckloniae,species,Flagellimonas eckloniae +Muricauda flava,species,Flagellimonas flava +Muricauda flavescens,species,Flagellimonas flavescens +Muricauda hadalis,species,Flagellimonas hadalis +Muricauda hymeniacidonis,species,Flagellimonas allohymeniacidonis +Muricauda indica,species,Flagellimonas indica +Muricauda iocasae,species,Flagellimonas iocasae +Muricauda koreensis,species,Flagellimonas aquimarina +Muricauda lutaonensis,species,Flagellimonas lutaonensis +Muricauda lutea,species,Croceivirga lutea +Muricauda lutimaris,species,Flagellimonas lutimaris +Muricauda marina,species,Flagellimonas marina +Muricauda maritima,species,Flagellimonas pelagia +Muricauda meishanensis,species,Flagellimonas meishanensis +Muricauda myxillae,species,Flagellimonas myxillae +Muricauda nanhaiensis,species,Flagellimonas nanhaiensis +Muricauda oceanensis,species,Flagellimonas oceanensis +Muricauda oceani,species,Flagellimonas oceani +Muricauda ochracea,species,Flagellimonas ochracea +Muricauda okinawensis,species,Flagellimonas okinawensis +Muricauda olearia,species,Flagellimonas olearia +Muricauda onchidii,species,Flagellimonas onchidii +Muricauda pacifica,species,Flagellimonas meridianipacifica +Muricauda parva,species,Flagellimonas pacifica +Muricauda profundi,species,Flagellimonas profundi +Muricauda ruestringensis,species,Flagellimonas ruestringensis +Muricauda sediminis,species,Flagellimonas sediminis +Muricauda spongiicola,species,Flagellimonas spongiicola +Muricauda symbiotica,species,Flagellimonas hymeniacidonis +Muricauda taeanensis,species,Flagellimonas taeanensis +Muricauda yonaguniensis,species,Flagellimonas yonaguniensis +Muricauda zhangzhouensis,species,Flagellimonas zhangzhouensis +Muricauda,genus,Flagellimonas +Muriicola lacisalsi,species,Maritimibacter lacisalsi +Muriiphilus fusiformis,species,Maritimibacter fusiformis +Muriiphilus,genus,Maritimibacter +Musicola paradisiaca,species,Dickeya paradisiaca +Musicola,genus,Dickeya +Mycobacterium africanum,species,Mycobacterium tuberculosis +Mycobacterium bolletii,species,Mycobacterium abscessus subsp. bolletii +Mycobacterium bouchedurhonense,species,Mycobacterium avium +Mycobacterium bovis,species,Mycobacterium tuberculosis +Mycobacterium caprae,species,Mycobacterium tuberculosis +Mycobacterium chelonei,species,Mycobacterium chelonae +Mycobacterium chimaera,species,Mycobacterium intracellulare subsp. chimaera +Mycobacterium chlorophenolicum,species,Mycobacterium chlorophenolicum +Mycobacterium intracellularis,species,Mycobacterium intracellulare +Mycobacterium massiliense,species,Mycobacterium abscessus subsp. massiliense +Mycobacterium microti,species,Mycobacterium tuberculosis +Mycobacterium paraintracellulare,species,Mycobacterium intracellulare +Mycobacterium paratuberculosis,species,Mycobacterium avium subsp. paratuberculosis +Mycobacterium pinnipedii,species,Mycobacterium tuberculosis +Mycobacterium vanbaalenii,species,Mycobacterium austroafricanum +Mycobacterium xenopei,species,Mycobacterium xenopi +Mycobacterium yongonense,species,Mycobacterium intracellulare subsp. chimaera +Mycobacteroides abscessus,species,Mycobacterium abscessus +Mycobacteroides chelonae,species,Mycobacterium chelonae +Mycobacteroides franklinii,species,Mycobacterium franklinii +Mycobacteroides immunogenum,species,Mycobacterium immunogenum +Mycobacteroides salmoniphilum,species,Mycobacterium salmoniphilum +Mycobacteroides saopaulense,species,Mycobacterium saopaulense +Mycobacteroides stephanolepidis,species,Mycobacterium stephanolepidis +Mycobacteroides,genus,Mycobacterium +Mycolicibacillus koreensis,species,Mycobacterium koreense +Mycolicibacillus parakoreensis,species,Mycobacterium parakoreense +Mycolicibacillus trivialis,species,Mycobacterium triviale +Mycolicibacillus,genus,Mycobacterium +Mycolicibacter acidiphilus,species,Mycobacterium acidiphilum +Mycolicibacter algericus,species,Mycobacterium algericum +Mycolicibacter arupensis,species,Mycobacterium arupense +Mycolicibacter engbaekii,species,Mycobacterium engbaekii +Mycolicibacter heraklionensis,species,Mycobacterium heraklionense +Mycolicibacter hiberniae,species,Mycobacterium hiberniae +Mycolicibacter kumamotonensis,species,Mycobacterium kumamotonense +Mycolicibacter longobardus,species,Mycobacterium longobardum +Mycolicibacter minnesotensis,species,Mycobacterium minnesotense +Mycolicibacter nonchromogenicus,species,Mycobacterium nonchromogenicum +Mycolicibacter paraterrae,species,Mycobacterium paraterrae +Mycolicibacter senuensis,species,Mycobacterium senuense +Mycolicibacter terrae,species,Mycobacterium terrae +Mycolicibacter,genus,Mycobacterium +Mycolicibacterium acapulcense,species,Mycobacterium acapulcense +Mycolicibacterium acapulense,species,Mycobacterium acapulcense +Mycolicibacterium agri,species,Mycobacterium agri +Mycolicibacterium aichiense,species,Mycobacterium aichiense +Mycolicibacterium alvei,species,Mycobacterium alvei +Mycolicibacterium anyangense,species,Mycobacterium anyangense +Mycolicibacterium arabiense,species,Mycobacterium arabiense +Mycolicibacterium arcueilense,species,Mycobacterium arcueilense +Mycolicibacterium aromaticivorans,species,Mycobacterium aromaticivorans +Mycolicibacterium arseniciresistens,species,Mycobacterium arseniciresistens +Mycolicibacterium aubagnense,species,Mycobacterium aubagnense +Mycolicibacterium aurantiacum,species,Mycobacterium aurantiacum +Mycolicibacterium aurum,species,Mycobacterium aurum +Mycolicibacterium austroafricanum,species,Mycobacterium austroafricanum +Mycolicibacterium bacteremicum,species,Mycobacterium bacteremicum +Mycolicibacterium baixiangningiae,species,Mycobacterium baixiangningiae +Mycolicibacterium boenickei,species,Mycobacterium boenickei +Mycolicibacterium brisbanense,species,Mycobacterium brisbanense +Mycolicibacterium brumae,species,Mycobacterium brumae +Mycolicibacterium canariasense,species,Mycobacterium canariasense +Mycolicibacterium celeriflavum,species,Mycobacterium celeriflavum +Mycolicibacterium chitae,species,Mycobacterium chitae +Mycolicibacterium chlorophenolicum,species,Mycobacterium chlorophenolicum +Mycolicibacterium chubuense,species,Mycobacterium chubuense +Mycolicibacterium conceptionense,species,Mycobacterium conceptionense +Mycolicibacterium confluentis,species,Mycobacterium confluentis +Mycolicibacterium cosmeticum,species,Mycobacterium cosmeticum +Mycolicibacterium crocinum,species,Mycobacterium crocinum +Mycolicibacterium cyprinidarum,species,Mycobacterium cyprinidarum +Mycolicibacterium diernhoferi,species,Mycobacterium diernhoferi +Mycolicibacterium doricum,species,Mycobacterium doricum +Mycolicibacterium duvalii,species,Mycobacterium duvalii +Mycolicibacterium elephantis,species,Mycobacterium elephantis +Mycolicibacterium fallax,species,Mycobacterium fallax +Mycolicibacterium farcinogenes,species,Mycobacterium farcinogenes +Mycolicibacterium flavescens,species,Mycobacterium flavescens +Mycolicibacterium fluoranthenivorans,species,Mycobacterium fluoranthenivorans +Mycolicibacterium fortuitum,species,Mycobacterium fortuitum +Mycolicibacterium frederiksbergense,species,Mycobacterium frederiksbergense +Mycolicibacterium gadium,species,Mycobacterium gadium +Mycolicibacterium gilvum,species,Mycobacterium gilvum +Mycolicibacterium grossiae,species,Mycobacterium grossiae +Mycolicibacterium hassiacum,species,Mycobacterium hassiacum +Mycolicibacterium helvum,species,Mycobacterium helvum +Mycolicibacterium hippocampi,species,Mycobacterium hippocampi +Mycolicibacterium hodleri,species,Mycobacterium hodleri +Mycolicibacterium holsaticum,species,Mycobacterium holsaticum +Mycolicibacterium houstonense,species,Mycobacterium houstonense +Mycolicibacterium insubricum,species,Mycobacterium insubricum +Mycolicibacterium iranicum,species,Mycobacterium iranicum +Mycolicibacterium komossense,species,Mycobacterium komossense +Mycolicibacterium lacusdiani,species,Mycobacterium lacusdiani +Mycolicibacterium litorale,species,Mycobacterium litorale +Mycolicibacterium llatzerense,species,Mycobacterium llatzerense +Mycolicibacterium lutetiense,species,Mycobacterium lutetiense +Mycolicibacterium madagascariense,species,Mycobacterium madagascariense +Mycolicibacterium mageritense,species,Mycobacterium mageritense +Mycolicibacterium malmesburyense,species,Mycobacterium malmesburyense +Mycolicibacterium mengxiangliae,species,Mycobacterium mengxiangliae +Mycolicibacterium mengxianglii,species,Mycobacterium mengxiangliae +Mycolicibacterium monacense,species,Mycobacterium monacense +Mycolicibacterium moriokaense,species,Mycobacterium moriokaense +Mycolicibacterium mucogenicum,species,Mycobacterium mucogenicum +Mycolicibacterium murale,species,Mycobacterium murale +Mycolicibacterium neoaurum,species,Mycobacterium neoaurum +Mycolicibacterium neworleansense,species,Mycobacterium neworleansense +Mycolicibacterium nivoides,species,Mycobacterium nivoides +Mycolicibacterium novocastrense,species,Mycobacterium novocastrense +Mycolicibacterium obuense,species,Mycobacterium obuense +Mycolicibacterium oryzae,species,Mycobacterium oryzae +Mycolicibacterium palauense,species,Mycobacterium palauense +Mycolicibacterium pallens,species,Mycobacterium pallens +Mycolicibacterium parafortuitum,species,Mycobacterium parafortuitum +Mycolicibacterium peregrinum,species,Mycobacterium peregrinum +Mycolicibacterium phlei,species,Mycobacterium phlei +Mycolicibacterium phocaicum,species,Mycobacterium phocaicum +Mycolicibacterium porcinum,species,Mycobacterium porcinum +Mycolicibacterium poriferae,species,Mycobacterium poriferae +Mycolicibacterium psychrotolerans,species,Mycobacterium psychrotolerans +Mycolicibacterium pulveris,species,Mycobacterium pulveris +Mycolicibacterium pyrenivorans,species,Mycobacterium pyrenivorans +Mycolicibacterium rhodesiae,species,Mycobacterium rhodesiae +Mycolicibacterium rufum,species,Mycobacterium rufum +Mycolicibacterium rutilum,species,Mycobacterium rutilum +Mycolicibacterium sarraceniae,species,Mycobacterium sarraceniae +Mycolicibacterium sediminis,species,Mycobacterium sediminis +Mycolicibacterium senegalense,species,Mycobacterium senegalense +Mycolicibacterium septicum,species,Mycobacterium septicum +Mycolicibacterium setense,species,Mycobacterium setense +Mycolicibacterium smegmatis,species,Mycobacterium smegmatis +Mycolicibacterium sphagni,species,Mycobacterium sphagni +Mycolicibacterium stellerae,species,Mycobacterium stellerae +Mycolicibacterium thermoresistibile,species,Mycobacterium thermoresistibile +Mycolicibacterium tokaiense,species,Mycobacterium tokaiense +Mycolicibacterium tusciae,species,Mycobacterium tusciae +Mycolicibacterium vaccae,species,Mycobacterium vaccae +Mycolicibacterium vanbaalenii,species,Mycobacterium austroafricanum +Mycolicibacterium vinylchloridicum,species,Mycobacterium vinylchloridicum +Mycolicibacterium vulneris,species,Mycobacterium vulneris +Mycolicibacterium wolinskyi,species,Mycobacterium wolinskyi +Mycolicibacterium xanthum,species,Mycobacterium xanthum +Mycolicibacterium,genus,Mycobacterium +Mycoplana rhizolycopersici,species,Rhizobium rhizolycopersici +Mycoplana segnis,species,Caulobacter segnis +Mycoplasma adleri,species,Mycoplasmopsis adleri +Mycoplasma agalactiae,species,Mycoplasmopsis agalactiae +Mycoplasma agassizii,species,Mycoplasmopsis agassizii +Mycoplasma alkalescens,species,Metamycoplasma alkalescens +Mycoplasma alligatoris,species,Mycoplasmopsis alligatoris +Mycoplasma alvi,species,Mycoplasmoides alvi +Mycoplasma anatis,species,Mycoplasmopsis anatis +Mycoplasma arginini,species,Mycoplasmopsis arginini +Mycoplasma arthritidis,species,Metamycoplasma arthritidis +Mycoplasma auris,species,Metamycoplasma auris +Mycoplasma bovigenitalium,species,Mycoplasmopsis bovigenitalium +Mycoplasma bovirhinis,species,Mycoplasmopsis bovirhinis +Mycoplasma bovis,species,Mycoplasmopsis bovis +Mycoplasma bovoculi,species,Mesomycoplasma bovoculi +Mycoplasma buccale,species,Metamycoplasma buccale +Mycoplasma californicum,species,Mycoplasmopsis californica +Mycoplasma canadense,species,Metamycoplasma canadense +Mycoplasma canis,species,Mycoplasmopsis canis +Mycoplasma caviae,species,Mycoplasmopsis caviae +Mycoplasma ciconiae,species,Mycoplasmopsis ciconiae +Mycoplasma citelli,species,Mycoplasmopsis citelli +Mycoplasma cloacale,species,Metamycoplasma cloacale +Mycoplasma columbinasale,species,Mycoplasmopsis columbinasalis +Mycoplasma columbinum,species,Mycoplasmopsis columbina +Mycoplasma columborale,species,Mycoplasmopsis columboralis +Mycoplasma conjunctivae,species,Mesomycoplasma conjunctivae +Mycoplasma cricetuli,species,Mycoplasmopsis cricetuli +Mycoplasma cynos,species,Mycoplasmopsis cynos +Mycoplasma dispar,species,Mesomycoplasma dispar +Mycoplasma edwardii,species,Mycoplasmopsis edwardii +Mycoplasma ellychniae,species,Entomoplasma ellychniae +Mycoplasma equigenitalium,species,Mycoplasmopsis equigenitalium +Mycoplasma equirhinis,species,Metamycoplasma equirhinis +Mycoplasma fastidiosum,species,Mycoplasmoides fastidiosum +Mycoplasma faucium,species,Metamycoplasma faucium +Mycoplasma felifaucium,species,Mycoplasmopsis felifaucium +Mycoplasma felis,species,Mycoplasmopsis felis +Mycoplasma fermentans,species,Mycoplasmopsis fermentans +Mycoplasma flocculare,species,Mesomycoplasma flocculare +Mycoplasma gallinaceum,species,Mycoplasmopsis gallinacea +Mycoplasma gallinarum,species,Mycoplasmopsis gallinarum +Mycoplasma gallisepticum,species,Mycoplasmoides gallisepticum +Mycoplasma gallopavonis,species,Mycoplasmopsis gallopavonis +Mycoplasma gateae,species,Metamycoplasma gateae +Mycoplasma genitalium,species,Mycoplasmoides genitalium +Mycoplasma glycophilum,species,Mycoplasmopsis glycophila +Mycoplasma haemomuris,species,Haemobartonella muris +Mycoplasma haemosuis,species,Mycoplasma suis +Mycoplasma hominis,species,Metamycoplasma hominis +Mycoplasma hyopharyngis,species,Mycoplasmopsis hyopharyngis +Mycoplasma hyopneumoniae,species,Mesomycoplasma hyopneumoniae +Mycoplasma hyorhinis,species,Mesomycoplasma hyorhinis +Mycoplasma hyosynoviae,species,Metamycoplasma hyosynoviae +Mycoplasma iners,species,Mycoplasmopsis iners +Mycoplasma iowae,species,Malacoplasma iowae +Mycoplasma lactucae,species,Mesoplasma lactucae +Mycoplasma lagogenitalium,species,Mesomycoplasma lagogenitalium +Mycoplasma leocaptivus,species,Mycoplasma leonicaptivi +Mycoplasma lipofaciens,species,Mycoplasmopsis lipofaciens +Mycoplasma lipophilum,species,Mycoplasmopsis lipophila +Mycoplasma lucivorax,species,Williamsoniiplasma lucivorax +Mycoplasma luminosum,species,Williamsoniiplasma luminosum +Mycoplasma maculosum,species,Mycoplasmopsis maculosa +Mycoplasma melaleucae,species,Mesoplasma melaleucae +Mycoplasma meleagridis,species,Mycoplasmopsis meleagridis +Mycoplasma microti,species,Malacoplasma microti +Mycoplasma moatsii,species,Mesomycoplasma moatsii +Mycoplasma molare,species,Mesomycoplasma molare +Mycoplasma mucosicanis,species,Mycoplasmopsis mucosicanis +Mycoplasma muris,species,Malacoplasma muris +Mycoplasma mustelae,species,Mycoplasmopsis mustelae +Mycoplasma neophronis,species,Metamycoplasma neophronis +Mycoplasma neurolyticum,species,Mesomycoplasma neurolyticum +Mycoplasma opalescens,species,Mycoplasmopsis opalescens +Mycoplasma orale,species,Metamycoplasma orale +Mycoplasma ovipneumoniae,species,Mesomycoplasma ovipneumoniae +Mycoplasma oxoniensis,species,Mycoplasma oxoniense +Mycoplasma penetrans,species,Malacoplasma penetrans +Mycoplasma phocacerebrale,species,Metamycoplasma phocicerebrale +Mycoplasma phocarhinis,species,Mycoplasmopsis phocirhinis +Mycoplasma phocicerebrale,species,Metamycoplasma phocicerebrale +Mycoplasma phocidae,species,Mycoplasma phocae +Mycoplasma phocirhinis,species,Mycoplasmopsis phocirhinis +Mycoplasma pirum,species,Mycoplasmoides pirum +Mycoplasma pneumoniae,species,Mycoplasmoides pneumoniae +Mycoplasma primatum,species,Mycoplasmopsis primatum +Mycoplasma pullorum,species,Mycoplasmopsis pullorum +Mycoplasma pulmonis,species,Mycoplasmopsis pulmonis +Mycoplasma salivarium,species,Metamycoplasma salivarium +Mycoplasma somnilux,species,Williamsoniiplasma somnilux +Mycoplasma spumans,species,Metamycoplasma spumans +Mycoplasma sturni,species,Mycoplasmopsis sturni +Mycoplasma sualvi,species,Metamycoplasma sualvi +Mycoplasma subdolum,species,Metamycoplasma subdolum +Mycoplasma synoviae,species,Mycoplasmopsis synoviae +Mycoplasma verecundum,species,Mycoplasmopsis verecunda +Myroides xuanwuensis,species,Myroides odoratimimus subsp. xuanwuensis +Myxococcus coralloides,species,Corallococcus coralloides +Myxococcus disciformis,species,Archangium disciforme +Myxococcus flavescens,species,Myxococcus virescens +Myxococcus landrumus,species,Myxococcus landrumensis +Myxococcus macrosporus,species,Corallococcus macrosporus +Mzabimyces algeriensis,species,Halopolyspora algeriensis +Mzabimyces,genus,Halopolyspora +Nakamurella albus,species,Nakamurella alba +Nannocystis poenicansa,species,Nannocystis punicea +Natranaeroarchaeum aerophilus,species,Natranaeroarchaeum aerophilum +Natrarchaeobius haloalkaliphilus,species,Natrarchaeobius halalkaliphilus +Natrialba aegyptiaca,species,Natrialba aegyptia +Natrinema ejinorense,species,Natrinema longum +Natronincola peptidovorans,species,Natronincola peptidivorans +Natronobacterium magadii,species,Natrialba magadii +Natronobacterium pharaonis,species,Natronomonas pharaonis +Natronobacterium vacuolata,species,Halorubrum vacuolatum +Natronobacterium vacuolatum,species,Halorubrum vacuolatum +Natronoincola histidinovorans,species,Natronincola histidinovorans +Natronoincola,genus,Natronincola +Natronolimnobius aegyptiacus,species,Natrarchaeobaculum aegyptiacum +Natronolimnobius innermongolicus,species,Natronolimnohabitans innermongolicus +Natronolimnobius sulfurireducens,species,Natrarchaeobaculum sulfurireducens +Nautella italica,species,Phaeobacter italicus +Nautella,genus,Phaeobacter +Naxibacter alkalitolerans,species,Massilia alkalitolerans +Naxibacter haematophilus,species,Massilia haematophila +Naxibacter suwonensis,species,Massilia suwonensis +Naxibacter varians,species,Massilia varians +Naxibacter,genus,Massilia +Neisseria caviae,species,Moraxella caviae +Neisseria cuniculi,species,Moraxella cuniculi +Neisseria denitrificans,species,Bergeriella denitrificans +Neisseria lactamicus,species,Neisseria lactamica +Neisseria ovis,species,Moraxella ovis +Neisseria weaveri,species,Neisseria weaveri +Nemorella caseinilytica,species,Nemorincola caseinilytica +Nemorella,genus,Nemorincola +Neogemmobacter tilapiae,species,Gemmobacter tilapiae +Neogemmobacter,genus,Gemmobacter +Neolewinella agarilytica,species,Lewinella agarilytica +Neolewinella antarctica,species,Lewinella antarctica +Neolewinella aquimaris,species,Lewinella aquimaris +Neolewinella aurantiaca,species,Lewinella aurantiaca +Neolewinella lacunae,species,Lewinella lacunae +Neolewinella litorea,species,Lewinella litorea +Neolewinella lutea,species,Lewinella lutea +Neolewinella marina,species,Lewinella marina +Neolewinella maritima,species,Lewinella maritima +Neolewinella persica,species,Lewinella persica +Neolewinella xylanilytica,species,Lewinella xylanilytica +Neolewinella,genus,Lewinella +Neomelitea salexigens,species,Spongiibacter marinus +Neomesorhizobium albiziae,species,Mesorhizobium albiziae +Neomesorhizobium,genus,Mesorhizobium +Neopararhizobium haloflavum,species,Pararhizobium haloflavum +Neopararhizobium,genus,Pararhizobium +Neopseudomonas abyssi,species,Pseudomonas abyssi +Neopseudomonas aestusnigri,species,Halopseudomonas aestusnigri +Neopseudomonas bauzanensis,species,Halopseudomonas bauzanensis +Neopseudomonas formosensis,species,Halopseudomonas formosensis +Neopseudomonas litoralis,species,Halopseudomonas litoralis +Neopseudomonas neustonica,species,Pseudomonas neustonica +Neopseudomonas oceani,species,Halopseudomonas oceani +Neopseudomonas pachastrellae,species,Halopseudomonas pachastrellae +Neopseudomonas pelagia,species,Halopseudomonas pelagia +Neopseudomonas pertucinogena,species,Halopseudomonas pertucinogena +Neopseudomonas profundi,species,Pseudomonas profundi +Neopseudomonas sabulinigri,species,Halopseudomonas sabulinigri +Neopseudomonas salina,species,Halopseudomonas salina +Neopseudomonas,genus,Halopseudomonas +Neorhizobium xiangyangii,species,Pseudorhizobium xiangyangii +Neorhizorhabdus crusticola,species,Sphingomonas crusticola +Neorhizorhabdus naphthae,species,Sphingomonas naphthae +Neorhizorhabdus oleivorans,species,Sphingomonas oleivorans +Neorhizorhabdus vulcanisoli,species,Sphingomonas vulcanisoli +Neorhizorhabdus,genus,Sphingomonas +Neorhodopirellula lusitana,species,Rhodopirellula lusitana +Neorhodopirellula pilleata,species,Rhodopirellula pilleata +Neorhodopirellula,genus,Rhodopirellula +Neosandaracinobacteroides saxicola,species,Sandaracinobacteroides saxicola +Neosandaracinobacteroides,genus,Sandaracinobacteroides +Neotamlana laminarinivorans,species,Tamlana laminarinivorans +Neotamlana nanhaiensis,species,Tamlana nanhaiensis +Neotamlana sargassicola,species,Tamlana sargassicola +Neotamlana sedimentorum,species,Tamlana sedimentorum +Neotamlana,genus,Tamlana +Neptunicoccus cionae,species,Amylibacter cionae +Nesiotobacter exalbescens,species,Pseudovibrio exalbescens +Nesiotobacter,genus,Pseudovibrio +Niallia circulans,species,Bacillus circulans +Niallia endozanthoxylica,species,Bacillus endozanthoxylicus +Niallia nealsonii,species,Bacillus nealsonii +Niallia oryzisoli,species,Bacillus oryzisoli +Niallia taxi,species,Bacillus taxi +Niallia,genus,Bacillus +Nicolia spurrieriana,species,Nicoliella spurrieriana +Nicolia,genus,Nicoliella +Nitratireductor thuwali,species,Nitratireductor thuwalensis +Nitrosococcus oceanus,species,Nitrosococcus oceani +Nitrosolobus multiformis,species,Nitrosospira multiformis +Nitrosolobus,genus,Nitrosospira +Nitrosophilus labii,species,Nitratiruptor labii +Nitrospirillum irinus,species,Nitrospirillum iridis +Nocardia amarae,species,Gordonia amarae +Nocardia autotrophica,species,Pseudonocardia autotrophica +Nocardia bhagyanesis,species,Nocardia bhagyanarayanae +Nocardia calcarea,species,Rhodococcus erythropolis +Nocardia cellulans,species,Cellulosimicrobium cellulans +Nocardia corynebacterioides,species,Rhodococcus corynebacterioides +Nocardia cummidelens,species,Nocardia salmonicida subsp. cummidelens +Nocardia cyriacigeorgici,species,Nocardia cyriacigeorgica +Nocardia globerula,species,Rhodococcus globerulus +Nocardia hydrocarbonoxydans,species,Pseudonocardia hydrocarbonoxydans +Nocardia mediterranea,species,Amycolatopsis mediterranei +Nocardia mediterranei,species,Amycolatopsis mediterranei +Nocardia orientalis,species,Amycolatopsis orientalis +Nocardia petroleophila,species,Pseudonocardia petroleophila +Nocardia pinensis,species,Skermania pinensis +Nocardia restricta,species,Rhodococcus equi +Nocardia rugosa,species,Prauserella rugosa +Nocardia saturnea,species,Pseudonocardia saturnea +Nocardia senatus,species,Nocardia sienata +Nocardia soli,species,Nocardia salmonicida subsp. cummidelens +Nocardia sulphurea,species,Amycolatopsis sulphurea +Nocardia testaceus,species,Nocardia testacea +Nocardioides basaltis,species,Nocardioides salarius +Nocardioides dilutes,species,Nocardioides dilutus +Nocardioides fastidiosa,species,Aeromicrobium fastidiosum +Nocardioides fastidiosus,species,Aeromicrobium fastidiosum +Nocardioides islandiensis,species,Nocardioides islandensis +Nocardioides panzhihuaensis,species,Nocardioides panzhihuensis +Nocardioides rubroscoriae,species,Nocardioides rubriscoriae +Nocardiopsis africana,species,Nonomuraea africana +Nocardiopsis albidorubidus,species,Nocardiopsis alborubida +Nocardiopsis alborubidus,species,Nocardiopsis alborubida +Nocardiopsis albus,species,Nocardiopsis alba +Nocardiopsis antarctica,species,Nocardiopsis dassonvillei +Nocardiopsis antarcticus,species,Nocardiopsis dassonvillei +Nocardiopsis arabia,species,Streptomonospora arabica +Nocardiopsis arabica,species,Streptomonospora arabica +Nocardiopsis arvandica,species,Nocardiopsis sinuspersici +Nocardiopsis baichengensis,species,Nocardiopsis halophila +Nocardiopsis coeruleofusca,species,Saccharothrix coeruleofusca +Nocardiopsis compostus,species,Nocardiopsis composta +Nocardiopsis flava,species,Lentzea flava +Nocardiopsis litoralis,species,Nocardiopsis kunsanensis +Nocardiopsis longispora,species,Saccharothrix longispora +Nocardiopsis mangrovei,species,Nocardiopsis mangrovi +Nocardiopsis mutabilis,species,Saccharothrix mutabilis +Nocardiopsis syringae,species,Saccharothrix syringae +Nonlabens marina,species,Nonlabens marinus +Nonlabens sediminis,species,Nonlabens tegetincola +Nonomuraea dietzii,species,Nonomuraea dietziae +Nonomuraea flexuosa,species,Thermopolyspora flexuosa +Nonomuraea nitratireducens,species,Nonomuraea phyllanthi +Nonomuria africana,species,Nonomuraea africana +Nonomuria angiospora,species,Nonomuraea angiospora +Nonomuria fastidiosa,species,Nonomuraea fastidiosa +Nonomuria ferruginea,species,Nonomuraea ferruginea +Nonomuria flexuosa,species,Thermopolyspora flexuosa +Nonomuria helvata,species,Nonomuraea helvata +Nonomuria polychroma,species,Nonomuraea polychroma +Nonomuria pusilla,species,Nonomuraea pusilla +Nonomuria recticatena,species,Nonomuraea recticatena +Nonomuria roseola,species,Nonomuraea roseola +Nonomuria roseoviolacea,species,Nonomuraea roseoviolacea +Nonomuria rubra,species,Nonomuraea rubra +Nonomuria salmonea,species,Nonomuraea salmonea +Nonomuria spiralis,species,Nonomuraea spiralis +Nonomuria turkmeniaca,species,Nonomuraea turkmeniaca +Nonomuria,genus,Nonomuraea +Novacetimonas cocois,species,Komagataeibacter cocois +Novacetimonas hansenii,species,Komagataeibacter hansenii +Novacetimonas maltaceti,species,Komagataeibacter maltaceti +Novacetimonas pomaceti,species,Komagataeibacter pomaceti +Novacetimonas,genus,Komagataeibacter +Noviherbaspirillum massiliense,species,Noviherbaspirillum massiliense +Noviluteimonas caseinilytica,species,Lysobacter caseinilyticus +Noviluteimonas dokdonensis,species,Lysobacter dokdonensis +Noviluteimonas gilva,species,Lysobacter gilvus +Noviluteimonas lactosilytica,species,Lysobacter lactosilyticus +Noviluteimonas,genus,Lysobacter +Novilysobacter antarcticus,species,Lysobacter antarcticus +Novilysobacter arseniciresistens,species,Lysobacter arseniciresistens +Novilysobacter avium,species,Lysobacter avium +Novilysobacter ciconiae,species,Lysobacter ciconiae +Novilysobacter concretionis,species,Lysobacter concretionis +Novilysobacter defluvii,species,Lysobacter defluvii +Novilysobacter erysipheiresistens,species,Lysobacter erysipheiresistens +Novilysobacter luteus,species,Lysobacter luteus +Novilysobacter selenitireducens,species,Lysobacter selenitireducens +Novilysobacter spongiicola,species,Lysobacter spongiicola +Novilysobacter,genus,Lysobacter +Novistakelama desiccabilis,species,Sphingomonas desiccabilis +Novistakelama hankookensis,species,Sphingomonas hankookensis +Novistakelama panni,species,Sphingomonas panni +Novistakelama,genus,Sphingomonas +Novosphingobium aromaticivorum,species,Novosphingobium aromaticivorans +Novosphingobium beihaiensis,species,Novosphingobium beihaiense +Novosphingobium mangrovi,species,Novosphingobium mangrovisedimenti +Novosphingobium roseae,species,Novosphingobium rosa +Novosphingobium stygiae,species,Novosphingobium aromaticivorans +Novosphingobium stygium,species,Novosphingobium aromaticivorans +Novosphingobium subarcticum,species,Novosphingobium resinovorum +Novosphingobium subterraneae,species,Novosphingobium subterraneum +Novosphingobium suterraneae,species,Novosphingobium subterraneum +Novosphingobium tardaugens,species,Caenibius tardaugens +Nubsella zeaxanthinifaciens,species,Pedobacter zeaxanthinifaciens +Nubsella,genus,Pedobacter +Oblitimonas alkaliphila,species,Thiopseudomonas alkaliphila +Oblitimonas,genus,Thiopseudomonas +Occallatibacter gabretensis,species,Terracidiphilus gabretensis +Oceanibulbus indolifex,species,Sulfitobacter indolifex +Oceanibulbus,genus,Sulfitobacter +Oceanicola antarcticus,species,Pseudooceanicola antarcticus +Oceanicola batsensis,species,Pseudooceanicola batsensis +Oceanicola flagellatus,species,Pseudooceanicola flagellatus +Oceanicola litoreus,species,Vannielia litorea +Oceanicola marinus,species,Pseudooceanicola marinus +Oceanicola nanhaiensis,species,Pseudooceanicola nanhaiensis +Oceanicola nitratireducens,species,Pseudooceanicola nitratireducens +Oceanicola pacificus,species,Lutimaribacter pacificus +Oceaniferula flavus,species,Oceaniferula flava +Oceanitalea nanhaiensis,species,Georgenia satyanarayanai +Oceanitalea,genus,Georgenia +Oceanobacillus soja,species,Oceanobacillus sojae +Oceanomonas baumannii,species,Oceanimonas baumannii +Oceanomonas doudoroffii,species,Oceanimonas doudoroffii +Oceanomonas,genus,Oceanimonas +Oceanospirillum commune,species,Marinomonas communis +Oceanospirillum hiroshimense,species,Oceanospirillum maris +Oceanospirillum jannaschii,species,Marinobacterium jannaschii +Oceanospirillum japonicum,species,Allopseudospirillum japonicum +Oceanospirillum kriegii,species,Oceanobacter kriegii +Oceanospirillum minutulum,species,Marinospirillum minutulum +Oceanospirillum pelagicum,species,Oceanospirillum beijerinckii +Oceanospirillum pusillum,species,Terasakiella pusilla +Ochrobactrum anthropi,species,Brucella anthropi +Ochrobactrum ciceri,species,Brucella ciceri +Ochrobactrum cytisi,species,Brucella cytisi +Ochrobactrum daejeonense,species,Brucella daejeonensis +Ochrobactrum endophyticum,species,Brucella endophytica +Ochrobactrum gallinifaecis,species,Brucella gallinifaecis +Ochrobactrum grignonense,species,Brucella grignonensis +Ochrobactrum haematophilum,species,Brucella haematophila +Ochrobactrum intermedium,species,Brucella intermedia +Ochrobactrum lupini,species,Brucella lupini +Ochrobactrum oryzae,species,Brucella oryzae +Ochrobactrum pecoris,species,Brucella pecoris +Ochrobactrum pituitosum,species,Brucella pituitosa +Ochrobactrum pseudintermedium,species,Brucella pseudintermedia +Ochrobactrum pseudogrignonense,species,Brucella pseudogrignonensis +Ochrobactrum rhizosphaerae,species,Brucella rhizosphaerae +Ochrobactrum thiophenivorans,species,Brucella thiophenivorans +Ochrobactrum tritici,species,Brucella tritici +Ochrobactrum,genus,Brucella +Octadecabacter jejudonensis,species,Pseudooctadecabacter jejudonensis +Oerskovia xanthineolytica,species,Cellulosimicrobium cellulans +Oleibacter marinus,species,Thalassolituus maritimus +Oleibacter,genus,Thalassolituus +Oligotropha carboxidovorans,species,Afipia carboxidovorans +Oligotropha,genus,Afipia +Olsenella faecalis,species,Paratractidigestivibacter faecalis +Olsenella gallinarum,species,Thermophilibacter gallinarum +Olsenella scatoligenes,species,Tractidigestivibacter scatoligenes +Onishia niordana,species,Halomonas niordana +Onishia taeanensis,species,Halomonas taeanensis +Onishia,genus,Halomonas +Oribaculum catoniae,species,Porphyromonas catoniae +Oribaculum,genus,Porphyromonas +Ornithinicoccus soli,species,Segeticoccus rhizosphaerae +Oryzomonas japonicum,species,Oryzomonas japonica +Oryzomonas ruber,species,Oryzomonas rubra +Oscillospira guilliermondi,species,Oscillospira guilliermondii +Pacificamonas flava,species,Pacificimonas flava +Pacificamonas,genus,Pacificimonas +Pacificimonas aurantium,species,Pacificimonas aurantia +Pacificimonas pallium,species,Pacificimonas pallii +Paenacidovorax caeni,species,Acidovorax caeni +Paenacidovorax monticola,species,Acidovorax monticola +Paenacidovorax,genus,Acidovorax +Paenibacillus anseongense,species,Paenibacillus anseongensis +Paenibacillus dauci,species,Paenibacillus shenyangensis +Paenibacillus durum,species,Paenibacillus durus +Paenibacillus ginsengisoli,species,Paenibacillus anaericanus +Paenibacillus gordonae,species,Paenibacillus validus +Paenibacillus jamilae,species,Paenibacillus polymyxa +Paenibacillus panacisoli,species,Paenibacillus massiliensis subsp. panacisoli +Paenibacillus pinesoli,species,Paenibacillus pinisoli +Paenibacillus pulvifaciens,species,Paenibacillus larvae +Paenibacillus riograndensis,species,Paenibacillus sonchi +Paenibacillus roseopurpureus,species,Paenibacillus roseipurpureus +Paenibacillus thermophilus,species,Paenibacillus macerans +Paenibacillus tyrfis,species,Paenibacillus tyrphae +Paenihalocynthiibacter styelae,species,Halocynthiibacter styelae +Paenihalocynthiibacter,genus,Halocynthiibacter +Paenilisteria newyorkensis,species,Listeria newyorkensis +Paenilisteria portnoyi,species,Listeria portnoyi +Paenilisteria riparia,species,Listeria riparia +Paenilisteria rocourtiae,species,Listeria rocourtiae +Paenilisteria rustica,species,Listeria rustica +Paenilisteria weihenstephanensis,species,Listeria weihenstephanensis +Paenilisteria,genus,Listeria +Paenimaribius caenipelagi,species,Palleronia caenipelagi +Paenimaribius,genus,Palleronia +Paenimyroides anatoliense,species,Myroides anatoliensis +Paenimyroides anatoliensis,species,Myroides anatoliensis +Paenimyroides aquimaris,species,Myroides aquimaris +Paenimyroides baculatum,species,Flavobacterium baculatum +Paenimyroides ceti,species,Myroides ceti +Paenimyroides cloacae,species,Myroides cloacae +Paenimyroides marinum,species,Myroides aquimaris +Paenimyroides naphthae,species,Flavobacterium naphthae +Paenimyroides tangerinum,species,Flavobacterium tangerinum +Paenimyroides ummariense,species,Flavobacterium ummariense +Paenimyroides viscosum,species,Flavobacterium viscosum +Paenirhizobium daejeonense,species,Rhizobium daejeonense +Paenirhizobium naphthalenivorans,species,Rhizobium naphthalenivorans +Paenirhizobium selenitireducens,species,Rhizobium selenitireducens +Paenirhizobium,genus,Rhizobium +Paenirhodobacter enshiensis,species,Rhodobacter enshiensis +Paenirhodobacter ferrireducens,species,Rhodobacter ferrireducens +Paenirhodobacter hankyongi,species,Rhodobacter hankyongi +Paenirhodobacter huangdaonensis,species,Rhodobacter huangdaonensis +Paenirhodobacter populi,species,Rhodobacter populi +Paenirhodobacter,genus,Rhodobacter +Pallidibacillus pasinlerensis,species,Caldibacillus pasinlerensis +Pallidibacillus thermolactis,species,Caldibacillus thermolactis +Pallidibacillus,genus,Caldibacillus +Paludicola psychrotolerans,species,Paludihabitans psychrotolerans +Paludicola,genus,Paludihabitans +Pannonibacter indica,species,Pannonibacter indicus +Pantoea ananas,species,Pantoea ananatis +Pantoea calida,species,Mixta calida +Pantoea citrea,species,Tatumella citrea +Pantoea gaviniae,species,Mixta gaviniae +Pantoea intestinalis,species,Mixta intestinalis +Pantoea punctata,species,Tatumella punctata +Pantoea terrea,species,Tatumella terrea +Pantoea theicola,species,Mixta theicola +Paraburkholderia andropogonis,species,Robbsia andropogonis +Paraburkholderia caryophylli,species,Trinickia caryophylli +Paraburkholderia eburne,species,Paraburkholderia eburnea +Paraburkholderia endofungorum,species,Mycetohabitans endofungorum +Paraburkholderia glathei,species,Caballeronia glathei +Paraburkholderia grimmiae,species,Caballeronia grimmiae +Paraburkholderia humi,species,Caballeronia humi +Paraburkholderia insulsa,species,Paraburkholderia fungorum +Paraburkholderia panaciterrae,species,Paraburkholderia ginsengiterrae +Paraburkholderia phenazinium,species,Paraburkholderia phenazinia +Paraburkholderia rhizoxinica,species,Mycetohabitans rhizoxinica +Paraburkholderia soli,species,Trinickia soli +Paraburkholderia sordidicola,species,Caballeronia sordidicola +Paraburkholderia symbiotica,species,Trinickia symbiotica +Paraburkholderia zhejiangensis,species,Caballeronia zhejiangensis +Paracerasibacillus soli,species,Virgibacillus soli +Paracerasibacillus,genus,Virgibacillus +Paracholeplasma morum,species,Acholeplasma morum +Paracholeplasma vituli,species,Acholeplasma vituli +Paracholeplasma,genus,Acholeplasma +Paracidovorax anthurii,species,Acidovorax anthurii +Paracidovorax avenae,species,Acidovorax avenae +Paracidovorax cattleyae,species,Acidovorax cattleyae +Paracidovorax citrulli,species,Acidovorax citrulli +Paracidovorax konjaci,species,Acidovorax konjaci +Paracidovorax oryzae,species,Acidovorax oryzae +Paracidovorax valerianellae,species,Acidovorax valerianellae +Paracidovorax wautersii,species,Acidovorax wautersii +Paracidovorax,genus,Acidovorax +Paraclostridium ghonii,species,Paeniclostridium ghonii +Paraclostridium sordellii,species,Paeniclostridium sordellii +Paraclostridium tenue,species,Eubacterium tenue +Paracoccus halodenitrificans,species,Halomonas halodenitrificans +Paracoccus methylarcula,species,Methylarcula marina +Paracoccus sigandri,species,Paracoccus sigani +Paracoccus siganidrum,species,Paracoccus sigani +Paracoccus yeeii,species,Paracoccus yeei +Paractinoplanes abujensis,species,Actinoplanes abujensis +Paractinoplanes aksuensis,species,Actinoplanes aksuensis +Paractinoplanes atraurantiacus,species,Actinoplanes atraurantiacus +Paractinoplanes bogorensis,species,Actinoplanes bogorensis +Paractinoplanes brasiliensis,species,Actinoplanes brasiliensis +Paractinoplanes cibodasensis,species,Actinoplanes cibodasensis +Paractinoplanes deccanensis,species,Actinoplanes deccanensis +Paractinoplanes deserti,species,Actinoplanes deserti +Paractinoplanes durhamensis,species,Actinoplanes durhamensis +Paractinoplanes ferrugineus,species,Actinoplanes ferrugineus +Paractinoplanes globisporus,species,Actinoplanes globisporus +Paractinoplanes hotanensis,species,Actinoplanes hotanensis +Paractinoplanes lichenicola,species,Actinoplanes lichenicola +Paractinoplanes maris,species,Actinoplanes maris +Paractinoplanes ovalisporus,species,Actinoplanes ovalisporus +Paractinoplanes polyasparticus,species,Actinoplanes polyasparticus +Paractinoplanes pyxinae,species,Actinoplanes pyxinae +Paractinoplanes ramoplaninifer,species,Actinoplanes ramoplaninifer +Paractinoplanes rhizophilus,species,Actinoplanes rhizophilus +Paractinoplanes rishiriensis,species,Actinoplanes rishiriensis +Paractinoplanes sediminis,species,Actinoplanes sediminis +Paractinoplanes tereljensis,species,Actinoplanes tereljensis +Paractinoplanes toevensis,species,Actinoplanes toevensis +Paractinoplanes tropicalis,species,Actinoplanes tropicalis +Paractinoplanes,genus,Actinoplanes +Paradesertivirga mongoliensis,species,Pedobacter mongoliensis +Paradesertivirga,genus,Pedobacter +Paradesulfovibrio bizertensis,species,Desulfobaculum bizertense +Paradesulfovibrio,genus,Desulfobaculum +Paradonghicola geojensis,species,Marivivens geojensis +Paradonghicola,genus,Marivivens +Parafannyhessea umbonata,species,Olsenella umbonata +Parafannyhessea,genus,Olsenella +Paraflavitalea speifideiaquila,species,Paraflavitalea speifideaquila +Parafrankia colletiae,species,Frankia colletiae +Parafrankia discariae,species,Frankia discariae +Parafrankia elaeagni,species,Frankia elaeagni +Parafrankia irregularis,species,Frankia irregularis +Parafrankia soli,species,Frankia soli +Parafrankia,genus,Frankia +Paragemmobacter amnigenus,species,Rhodobacter amnigenus +Paragemmobacter aquarius,species,Gemmobacter aquarius +Paragemmobacter kunshanensis,species,Rhodobacter kunshanensis +Paragemmobacter ruber,species,Rhodobacter ruber +Paragemmobacter straminiformis,species,Gemmobacter straminiformis +Paragemmobacter,genus,Gemmobacter +Paraglaciecola agarilytica,species,Paraglaciecola chathamensis +Paraglaciecola oceanifecundans,species,Paraglaciecola chathamensis +Paraglycomyces xinjiangensis,species,Salininema proteolyticum +Paraglycomyces,genus,Salininema +Paralactobacillus selangorensis,species,Paralactobacillus selangorensis +Paramagnetospirillum caucaseum,species,Magnetospirillum caucaseum +Paramagnetospirillum kuznetsovii,species,Magnetospirillum kuznetsovii +Paramagnetospirillum magnetotacticum,species,Magnetospirillum magnetotacticum +Paramagnetospirillum marisnigri,species,Magnetospirillum marisnigri +Paramagnetospirillum,genus,Magnetospirillum +Paramicrobacterium agarici,species,Microbacterium agarici +Paramicrobacterium chengjingii,species,Microbacterium chengjingii +Paramicrobacterium fandaimingii,species,Microbacterium fandaimingii +Paramicrobacterium humi,species,Microbacterium humi +Paramicrobacterium,genus,Microbacterium +Paramylibacter kogurei,species,Amylibacter kogurei +Paramylibacter ulvae,species,Amylibacter ulvae +Paramylibacter,genus,Amylibacter +Paranovosphingobium aquiterrae,species,Novosphingobium aquiterrae +Paranovosphingobium arvoryzae,species,Novosphingobium arvoryzae +Paranovosphingobium kunmingense,species,Novosphingobium kunmingense +Paranovosphingobium,genus,Novosphingobium +Paraoceanicella profunda,species,Paroceanicella profunda +Paraoceanicella,genus,Paroceanicella +Paraphaeobacter pallidus,species,Salipiger pallidus +Paraphaeobacter,genus,Salipiger +Parapontixanthobacter aurantiacus,species,Qipengyuania lutea +Parapontixanthobacter,genus,Qipengyuania +Parapseudomonas hussainii,species,Atopomonas hussainii +Parapseudomonas,genus,Atopomonas +Paraquisediminimonas paeninsulae,species,Sphingomonas paeninsulae +Paraquisediminimonas,genus,Sphingomonas +Pararhizobium gei,species,Rhizobium gei +Pararhizorhabdus arantia,species,Sphingomonas arantia +Pararhizorhabdus jatrophae,species,Sphingomonas jatrophae +Pararhizorhabdus montana,species,Sphingomonas montana +Pararhizorhabdus prati,species,Sphingomonas prati +Pararhizorhabdus,genus,Sphingomonas +Pararhodobacter marinus,species,Pararhodobacter zhoushanensis +Pararoseomonas aeriglobus,species,Muricoccus aeriglobus +Pararoseomonas aerilata,species,Muricoccus aerilatus +Pararoseomonas harenae,species,Muricoccus harenae +Pararoseomonas nepalensis,species,Muricoccus nepalensis +Pararoseomonas pecuniae,species,Muricoccus pecuniae +Pararoseomonas radiodurans,species,Muricoccus radiodurans +Pararoseomonas rosea,species,Muricoccus roseus +Pararoseomonas vinacea,species,Muricoccus vinaceus +Pararoseomonas,genus,Muricoccus +Parasedimentitalea huanghaiensis,species,Parasedimentitalea huanghaiensis +Parasedimentitalea marina,species,Parasedimentitalea maritima +Parasphaerochaeta coccoides,species,Sphaerochaeta coccoides +Parasphaerochaeta,genus,Sphaerochaeta +Parasphingobium lignivorans,species,Sphingobium lignivorans +Parasphingobium sufflavum,species,Sphingobium sufflavum +Parasphingobium xanthum,species,Sphingobium xanthum +Parasphingobium,genus,Sphingobium +Parasphingomonas aliaeris,species,Sphingomonas aliaeris +Parasphingomonas alpina,species,Sphingomonas alpina +Parasphingomonas aquatica,species,Sphingomonas aquatica +Parasphingomonas aracearum,species,Sphingomonas aracearum +Parasphingomonas echinoides,species,Sphingomonas echinoides +Parasphingomonas glacialis,species,Sphingomonas glacialis +Parasphingomonas hylomeconis,species,Sphingomonas hylomeconis +Parasphingomonas panacis,species,Sphingomonas panacis +Parasphingomonas populi,species,Sphingomonas populi +Parasphingomonas psychrolutea,species,Sphingomonas psychrolutea +Parasphingomonas qilianensis,species,Sphingomonas qilianensis +Parasphingomonas,genus,Sphingomonas +Parastakelama aestuarii,species,Sphingomonas aestuarii +Parastakelama baiyangensis,species,Sphingomonas baiyangensis +Parastakelama japonica,species,Sphingomonas japonica +Parastakelama spermidinifaciens,species,Sphingomonas spermidinifaciens +Parastakelama yantingensis,species,Sphingomonas yantingensis +Parastakelama,genus,Sphingomonas +Paraundibacterium terreum,species,Parundibacterium terreum +Paraundibacterium,genus,Parundibacterium +Parayabuuchia changbaiensis,species,Sphingomonas changbaiensis +Parayabuuchia flavalba,species,Sphingomonas flavalba +Parayabuuchia jejuensis,species,Sphingomonas jejuensis +Parayabuuchia,genus,Sphingomonas +Parvibacter caecicola,species,Adlercreutzia caecicola +Parvibacter,genus,Adlercreutzia +Parvularcula flava,species,Aquisalinus luteolus +Pasteurella anatis,species,Gallibacterium anatis +Pasteurella avium,species,Avibacterium avium +Pasteurella bettii,species,Pasteurella bettyae +Pasteurella caecimuris,species,Rodentibacter caecimuris +Pasteurella gallicida,species,Pasteurella multocida +Pasteurella gallinarum,species,Avibacterium gallinarum +Pasteurella granulomatis,species,Mannheimia granulomatis +Pasteurella haemolytica,species,Mannheimia haemolytica +Pasteurella hemolytica,species,Mannheimia haemolytica +Pasteurella langaa,species,Alitibacter langaaensis +Pasteurella langaaensis,species,Alitibacter langaaensis +Pasteurella lymphangitidis,species,Yersinia pseudotuberculosis +Pasteurella mairi,species,Pasteurella mairii +Pasteurella pneumotropica,species,Rodentibacter pneumotropicus +Pasteurella trehalosi,species,Bibersteinia trehalosi +Pasteurella ureae,species,Actinobacillus ureae +Pasteurella volantium,species,Avibacterium volantium +Paucibacter oligotrophus,species,Roseateles oligotrophus +Paucibacter toxinivorans,species,Roseateles toxinivorans +Paucibacter,genus,Roseateles +Pectobacterium cacticidum,species,Pectobacterium cacticida +Pectobacterium carnegieana,species,Pectobacterium carnegieanum +Pectobacterium chrysanthemi,species,Dickeya chrysanthemi +Pectobacterium cypripedii,species,Pantoea cypripedii +Pectobacterium polaris,species,Pectobacterium polare +Pectobacterium rhapontici,species,Erwinia rhapontici +Pediococcus dextrinicus,species,Lapidilactobacillus dextrinicus +Pediococcus halophilus,species,Tetragenococcus halophilus +Pediococcus lolii,species,Pediococcus acidilactici +Pediococcus urinaeequi,species,Aerococcus urinaeequi +Pedobacter bauzanensis,species,Albibacterium bauzanense +Pedobacter composti,species,Daejeonella composti +Pedobacter ghigonii,species,Pedobacter ghigonis +Pedobacter huanghensis,species,Daejeonella huanghensis +Pedobacter indicus,species,Albibacterium indicum +Pedobacter luteus,species,Daejeonella lutea +Pedobacter oryzae,species,Daejeonella oryzae +Pedobacter piscium,species,Pedobacter antarcticus +Pedobacter ruber,species,Daejeonella rubra +Pedobacter saltans,species,Pseudopedobacter saltans +Pedobacter tournemirensis,species,Arcticibacter tournemirensis +Pelagibaca bermudensis,species,Salipiger bermudensis +Pelagibaca,genus,Salipiger +Pelagibacillus goriensis,species,Terribacillus saccharophilus +Pelagibacillus,genus,Terribacillus +Pelagicola litoralis,species,Shimia litoralis +Pelagicola litorisediminis,species,Roseovarius litorisediminis +Pelagicola marinus,species,Parasedimentitalea maritima +Pelagicola,genus,Shimia +Pelagivirga dicentrarchi,species,Roseovarius dicentrarchi +Pelczaria aurantia,species,Kocuria rosea +Pelczaria,genus,Kocuria +Pelobacter acetylenicus,species,Syntrophotalea acetylenica +Pelobacter carbinolicus,species,Syntrophotalea carbinolica +Pelobacter venetianus,species,Syntrophotalea venetiana +Pelodictyon luteolum,species,Chlorobium luteolum +Pelomonas caseinilytica,species,Roseateles caseinilyticus +Pelomonas cellulosilytica,species,Roseateles cellulosilyticus +Pelomonas puraquae,species,Roseateles puraquae +Pelomonas saccharophila,species,Roseateles saccharophilus +Pelomonas,genus,Roseateles +Pelotomaculum isophthalicum,species,Pelotomaculum isophthalicicum +Pelotomaculum terephthalicum,species,Pelotomaculum terephthalicicum +Peptococcus asaccharolyticus,species,Peptoniphilus asaccharolyticus +Peptococcus glycinophilus,species,Parvimonas micra +Peptococcus heliotrinireducens,species,Slackia heliotrinireducens +Peptococcus heliotrinreducans,species,Peptococcus heliotrinreducens +Peptococcus heliotrinreducens,species,Peptococcus heliotrinreducens +Peptococcus indolicus,species,Peptoniphilus indolicus +Peptococcus magnus,species,Finegoldia magna +Peptococcus prevotii,species,Anaerococcus prevotii +Peptococcus saccharolyticus,species,Staphylococcus saccharolyticus +Peptoniphilus porci,species,Peptoniphilus faecalis +Peptoniphilus rhinitidis,species,Peptoniphilus lacydonensis +Peptoniphilus senegalensis,species,Peptoniphilus tyrrelliae +Peptostreptococcus asaccharolyticus,species,Peptoniphilus asaccharolyticus +Peptostreptococcus barnesae,species,Gallicola barnesae +Peptostreptococcus harei,species,Peptoniphilus harei +Peptostreptococcus heliotrinireducens,species,Slackia heliotrinireducens +Peptostreptococcus heliotrinreducens,species,Slackia heliotrinireducens +Peptostreptococcus hydrogenalis,species,Anaerococcus hydrogenalis +Peptostreptococcus indolicus,species,Peptoniphilus indolicus +Peptostreptococcus ivorii,species,Peptoniphilus ivorii +Peptostreptococcus lacrimalis,species,Peptoniphilus lacrimalis +Peptostreptococcus lactolyticus,species,Anaerococcus lactolyticus +Peptostreptococcus magnus,species,Finegoldia magna +Peptostreptococcus micros,species,Parvimonas micra +Peptostreptococcus octavius,species,Anaerococcus octavius +Peptostreptococcus parvulus,species,Lancefieldella parvula +Peptostreptococcus prevotii,species,Anaerococcus prevotii +Peptostreptococcus productus,species,Blautia producta +Peptostreptococcus tetradius,species,Anaerococcus tetradius +Peptostreptococcus vaginalis,species,Anaerococcus vaginalis +Peribacillus castrilensis,species,Peribacillus frigoritolerans +Peristeroidobacter agariperforans,species,Steroidobacter agariperforans +Peristeroidobacter soli,species,Steroidobacter soli +Peristeroidobacter,genus,Steroidobacter +Persicivirga dokdonensis,species,Nonlabens dokdonensis +Persicivirga ulvanivorans,species,Nonlabens ulvanivorans +Persicivirga xylanidelens,species,Nonlabens xylanidelens +Persicivirga,genus,Nonlabens +Perspicuibacillus lycopersici,species,Caldibacillus lycopersici +Perspicuibacillus,genus,Caldibacillus +Peteryoungia aggregata,species,Rhizobium aggregatum +Peteryoungia ipomoeae,species,Rhizobium ipomoeae +Peteryoungia rhizophila,species,Rhizobium rhizophilum +Peteryoungia wuzhouensis,species,Rhizobium wuzhouense +Peteryoungia,genus,Rhizobium +Petrobacter succinatimandens,species,Tepidiphilus succinatimandens +Petrobacter,genus,Tepidiphilus +Petropleomorpha daqingensis,species,Geodermatophilus daqingensis +Petropleomorpha,genus,Geodermatophilus +Pfennigia purpurea,species,Lamprocystis purpurea +Pfennigia,genus,Lamprocystis +Phaeacidiphilus oryzae,species,Streptacidiphilus oryzae +Phaeacidiphilus,genus,Streptacidiphilus +Phaeobacter aquaemixtae,species,Leisingera aquaemixtae +Phaeobacter arcticus,species,Pseudophaeobacter arcticus +Phaeobacter caeruleus,species,Leisingera caerulea +Phaeobacter daeponensis,species,Leisingera daeponensis +Phaeobacter leonis,species,Pseudophaeobacter leonis +Phaeospirillum fulvum,species,Magnetospirillum fulvum +Phaeospirillum molischianum,species,Magnetospirillum molischianum +Phaeospirillum,genus,Magnetospirillum +Philodulcilactobacillus myokoensis,species,Philodulcilactobacillus myokonensis +Phocaeicola chinchillae,species,Phocaeicola sartorii +Phocoenobacter skyensis,species,Pasteurella skyensis +Photobacterium damsela,species,Photobacterium damselae +Photobacterium fischeri,species,Aliivibrio fischeri +Photobacterium histaminum,species,Photobacterium damselae +Photobacterium indicum,species,Photobacterium indicum +Photobacterium logei,species,Aliivibrio logei +Phycicoccus aerophilus,species,Pedococcus aerophilus +Phycicoccus badiiscoriae,species,Pedococcus badiiscoriae +Phycicoccus bigeumensis,species,Pedococcus bigeumensis +Phycicoccus cremeus,species,Pedococcus cremeus +Phycicoccus dokdonensis,species,Pedococcus dokdonensis +Phycicoccus ginsenosidimutans,species,Pedococcus ginsenosidimutans +Phycicoccus soli,species,Pedococcus soli +Phycicoccus sonneraticus,species,Phycicoccus sonneratiae +Phycicola gilvus,species,Microterricola gilva +Phycicola,genus,Microterricola +Phycocomes zhengii,species,Meridianimarinicoccus zhengii +Phycocomes,genus,Meridianimarinicoccus +Phyllobacterium rubiacearum,species,Phyllobacterium myrsinacearum +Phytopseudomonas argentinensis,species,Pseudomonas argentinensis +Phytopseudomonas daroniae,species,Pseudomonas daroniae +Phytopseudomonas dryadis,species,Pseudomonas dryadis +Phytopseudomonas flavescens,species,Pseudomonas flavescens +Phytopseudomonas punonensis,species,Pseudomonas punonensis +Phytopseudomonas seleniipraecipitans,species,Pseudomonas seleniipraecipitans +Phytopseudomonas straminea,species,Pseudomonas straminea +Phytopseudomonas,genus,Pseudomonas +Picrophilus torridus,species,Picrophilus oshimae +Pimelobacter jensenii,species,Nocardioides jensenii +Pimelobacter simplex,species,Nocardioides simplex +Pimelobacter tumescens,species,Terrabacter tumescens +Pimelobacter,genus,Nocardioides +Pirella marina,species,Blastopirellula marina +Pirella staleyi,species,Pirellula staleyi +Pirella,genus,Pirellula +Pirellula marina,species,Blastopirellula marina +Planctoellipticum variicoloris,species,Planctellipticum variicoloris +Planctoellipticum,genus,Planctellipticum +Planctomyces brasiliensis,species,Rubinisphaera brasiliensis +Planctomyces limnophilus,species,Planctopirus limnophila +Planctomyces maris,species,Gimesia maris +Planctomyces staleyi,species,Pirellula staleyi +Planctopirus limnophilus,species,Planctopirus limnophila +Planktotalea lamellibrachiae,species,Aliiroseovarius lamellibrachiae +Planobacterium salipaludis,species,Chryseobacterium salipaludis +Planobacterium taklimakanense,species,Chryseobacterium taklimakanense +Planobacterium,genus,Chryseobacterium +Planococcus halophilus,species,Marinococcus halophilus +Planococcus rifietensis,species,Planococcus rifietoensis +Planomicrobium alkanoclasticum,species,Planococcus alkanoclasticus +Planomicrobium chinense,species,Planococcus chinensis +Planomicrobium flavidum,species,Metaplanococcus flavidus +Planomicrobium glaciei,species,Planococcus glaciei +Planomicrobium koreense,species,Planococcus koreensis +Planomicrobium mcmeekinii,species,Planococcus mcmeekinii +Planomicrobium okeanokoites,species,Planococcus okeanokoites +Planomicrobium psychrophilum,species,Planococcus psychrophilus +Planomicrobium stackebrandtii,species,Planococcus stackebrandtii +Planomicrobium,genus,Planococcus +Planopolyspora crispa,species,Catenuloplanes crispus +Planopolyspora,genus,Catenuloplanes +Plantimonas endophytica,species,Aureimonas endophytica +Plantimonas ferruginea,species,Aureimonas ferruginea +Plantimonas leprariae,species,Aureimonas leprariae +Plantimonas psammosilenae,species,Aureimonas psammosilenae +Plantimonas rubiginis,species,Aureimonas rubiginis +Plantimonas,genus,Aureimonas +Plebeiobacterium marinum,species,Plebeiibacterium marinum +Plebeiobacterium sediminum,species,Plebeiibacterium sediminum +Plebeiobacterium,genus,Plebeiibacterium +Pleisomonas shigelloides,species,Plesiomonas shigelloides +Pleisomonas,genus,Plesiomonas +Pleomorpha daqingensis,species,Geodermatophilus daqingensis +Pleomorpha,genus,Geodermatophilus +Pleomorphobacterium xiamenense,species,Oceanicella actignis +Pleomorphobacterium,genus,Oceanicella +Polaribacter huanghezhanens,species,Polaribacter huanghezhanensis +Polaribacter undariae,species,Polaribacter sejongensis +Pollutimonas bauzanensis,species,Candidimonas bauzanensis +Pollutimonas harenae,species,Pusillimonas harenae +Pollutimonas thiosulfatoxidans,species,Pusillimonas thiosulfatoxidans +Polyangium cellulosum,species,Sorangium cellulosum +Polyangium minor,species,Polyangium minus +Polycladidibacter hongkongensis,species,Pseudovibrio hongkongensis +Polycladidibacter stylochi,species,Pseudovibrio stylochi +Polycladidibacter,genus,Pseudovibrio +Polymorphobacter arshaanensis,species,Glacieibacterium arshaanense +Polymorphobacter fuscus,species,Sandarakinorhabdus fusca +Polymorphobacter glacialis,species,Sandarakinorhabdus glacialis +Polymorphobacter megasporae,species,Glacieibacterium megasporae +Pontibrevibacter nitratireducens,species,Pontivivens nitratireducens +Pontibrevibacter,genus,Pontivivens +Ponticoccus lacteus,species,Mameliella alba +Ponticoccus marisrubri,species,Pseudoponticoccus marisrubri +Pontirhabdus pectinivorans,species,Algibacter pectinivorans +Pontirhabdus,genus,Algibacter +Porphyrobacter algicida,species,Qipengyuania algicida +Porphyrobacter colymbi,species,Erythrobacter colymbi +Porphyrobacter cryptus,species,Erythrobacter cryptus +Porphyrobacter dokdonensis,species,Erythrobacter dokdonensis +Porphyrobacter donghaensis,species,Erythrobacter donghaensis +Porphyrobacter mercurialis,species,Croceibacterium mercuriale +Porphyrobacter neustonensis,species,Erythrobacter neustonensis +Porphyrobacter sanguineus,species,Erythrobacter sanguineus +Porphyrobacter,genus,Erythrobacter +Porphyromonas cansulci,species,Porphyromonas crevioricanis +Porphyromonas salivosa,species,Porphyromonas macacae +Poseidonibacter antarcticus,species,Arcobacter antarcticus +Poseidonibacter lekithochrous,species,Arcobacter lekithochrous +Poseidonibacter parvus,species,Arcobacter parvus +Poseidonibacter,genus,Arcobacter +Prauserella endophytica,species,Prauserella coralliicola +Prauserella flava,species,Prauserella salsuginis +Prauserella sediminis,species,Prauserella salsuginis +Prescottella agglutinans,species,Rhodococcus agglutinans +Prescottella defluvii,species,Rhodococcus defluvii +Prescottella equi,species,Rhodococcus equi +Prescottella soli,species,Rhodococcus soli +Prescottella subtropica,species,Rhodococcus subtropicus +Prescottella,genus,Rhodococcus +Prevotella oulora,species,Prevotella oulorum +Prevotella tannerae,species,Alloprevotella tannerae +Prevotella zoogleoformans,species,Bacteroides zoogleoformans +Priestia iocasae,species,Metabacillus iocasae +Primorskyibacter flagellatus,species,Pseudooceanicola flagellatus +Primorskyibacter insulae,species,Pseudoprimorskyibacter insulae +Promicromonospora enterophila,species,Oerskovia enterophila +Promicromonospora flava,species,Krasilnikoviella flava +Promicromonospora pachnodae,species,Xylanimonas pachnodae +Propionibacter pelophilus,species,Propionivibrio pelophilus +Propionibacter,genus,Propionivibrio +Propionibacterium acidipropionici,species,Acidipropionibacterium acidipropionici +Propionibacterium acnes,species,Cutibacterium acnes +Propionibacterium avidum,species,Cutibacterium avidum +Propionibacterium damnosum,species,Acidipropionibacterium damnosum +Propionibacterium granulosum,species,Cutibacterium granulosum +Propionibacterium innocuum,species,Propioniferax innocua +Propionibacterium jensenii,species,Acidipropionibacterium jensenii +Propionibacterium lymphophilum,species,Propionimicrobium lymphophilum +Propionibacterium microaerophilum,species,Acidipropionibacterium microaerophilum +Propionibacterium namnetense,species,Cutibacterium namnetense +Propionibacterium olivae,species,Acidipropionibacterium olivae +Propionibacterium propionicum,species,Arachnia propionica +Propionibacterium propionicus,species,Arachnia propionica +Propionibacterium thoenii,species,Acidipropionibacterium thoenii +Prosthecomicrobium consociatum,species,Bauldia consociata +Prosthecomicrobium enhydrum,species,Devosia enhydra +Prosthecomicrobium hirschii,species,Prosthecodimorpha hirschii +Prosthecomicrobium litorale,species,Bauldia litoralis +Prosthecomicrobium litoralum,species,Bauldia litoralis +Prosthecomicrobium mishustinii,species,Devosia mishustinii +Proteus cibarius,species,Proteus terrae subsp. cibarius +Proteus inconstans,species,Providencia alcalifaciens +Proteus morganii,species,Morganella morganii +Proteus rettgeri,species,Providencia rettgeri +Protofrankia coriaria,species,Frankia coriariae +Protofrankia coriariae,species,Frankia coriariae +Protofrankia,genus,Frankia +Protomonas extorquens,species,Methylorubrum extorquens +Protomonas,genus,Methylorubrum +Providencia friedericiana,species,Providencia rustigianii +Pseudacidobacterium ailaaui,species,Acidobacterium ailaaui +Pseudacidobacterium,genus,Acidobacterium +Pseudaminobacter arsenicus,species,Borborobacter arsenicus +Pseudaminobacter manganicus,species,Manganibacter manganicus +Pseudaminobacter soli,species,Mesorhizobium soli +Pseudaquabacterium pictum,species,Rubrivivax pictus +Pseudaquabacterium terrae,species,Aquabacterium terrae +Pseudaquabacterium,genus,Rubrivivax +Pseudarcobacter aquimarinus,species,Arcobacter aquimarinus +Pseudarcobacter cloacae,species,Arcobacter cloacae +Pseudarcobacter defluvii,species,Arcobacter defluvii +Pseudarcobacter ellisii,species,Arcobacter ellisii +Pseudarcobacter suis,species,Arcobacter suis +Pseudarcobacter venerupis,species,Arcobacter venerupis +Pseudarcobacter,genus,Arcobacter +Pseudidiomarina maritima,species,Pseudidiomarina tainanensis +Pseudoalteromonas arabianensis,species,Pseudoalteromonas arabiensis +Pseudoalteromonas bacteriolytica,species,Algicola bacteriolytica +Pseudoalteromonas elyakovii,species,Pseudoalteromonas distincta +Pseudoalteromonas flavipulchra,species,Pseudoalteromonas maricaloris +Pseudoalteromonas nigrifaciens,species,Alteromonas nigrifaciens +Pseudoalteromonas paragorgicola,species,Pseudoalteromonas distincta +Pseudoalteromonas profundi,species,Pseudoalteromonas gelatinilytica +Pseudoalteromonas sagamiensis,species,Algicola sagamiensis +Pseudoamycolata halophobica,species,Pseudonocardia halophobica +Pseudoamycolata,genus,Pseudonocardia +Pseudoarcobacter aquimarinus,species,Arcobacter aquimarinus +Pseudoarcobacter cloacae,species,Arcobacter cloacae +Pseudoarcobacter defluvii,species,Arcobacter defluvii +Pseudoarcobacter ellisii,species,Arcobacter ellisii +Pseudoarcobacter suis,species,Arcobacter suis +Pseudoarcobacter venerupis,species,Arcobacter venerupis +Pseudoarcobacter,genus,Arcobacter +Pseudobizionia ponticola,species,Hanstruepera ponticola +Pseudobizionia,genus,Hanstruepera +Pseudoblastomonas flavescens,species,Alteriqipengyuania flavescens +Pseudoblastomonas halimionae,species,Alteriqipengyuania halimionae +Pseudoblastomonas marina,species,Blastomonas marina +Pseudoblastomonas,genus,Blastomonas +Pseudochrobactrum algeriensis,species,Pseudochrobactrum algeriense +Pseudochrobactrum glaciei,species,Paenochrobactrum glaciei +Pseudochryseolinea flava,species,Chryseolinea flava +Pseudochryseolinea,genus,Chryseolinea +Pseudocitrobacter anthropi,species,Pseudocitrobacter faecalis +Pseudoduganella albidiflava,species,Massilia albidiflava +Pseudoduganella armeniaca,species,Massilia armeniaca +Pseudoduganella buxea,species,Massilia buxea +Pseudoduganella chitinolytica,species,Telluria chitinolytica +Pseudoduganella danionis,species,Duganella danionis +Pseudoduganella dura,species,Massilia dura +Pseudoduganella eburnea,species,Massilia eburnea +Pseudoduganella flava,species,Massilia flava +Pseudoduganella ginsengisoli,species,Massilia ginsengisoli +Pseudoduganella guangdongensis,species,Massilia guangdongensis +Pseudoduganella humi,species,Massilia humi +Pseudoduganella lurida,species,Massilia lurida +Pseudoduganella lutea,species,Massilia lutea +Pseudoduganella namucuonensis,species,Massilia namucuonensis +Pseudoduganella plicata,species,Massilia plicata +Pseudoduganella rivuli,species,Massilia rivuli +Pseudoduganella umbonata,species,Massilia umbonata +Pseudoduganella violacea,species,Massilia violacea +Pseudoduganella violaceinigra,species,Duganella violaceinigra +Pseudoduganella,genus,Duganella +Pseudoflavitalea devenefica,species,Paraflavitalea devenefica +Pseudoflavitalea ginsenosidimutans,species,Pseudobacter ginsenosidimutans +Pseudoflavitalea soli,species,Flavitalea soli +Pseudofrankia asymbiotica,species,Frankia asymbiotica +Pseudofrankia inefficax,species,Frankia inefficax +Pseudofrankia saprophytica,species,Frankia saprophytica +Pseudofrankia,genus,Frankia +Pseudogemmobacter humi,species,Xinfangfangia humi +Pseudolactococcus reticulitermitis,species,Lactococcus reticulitermitis +Pseudolactococcus,genus,Lactococcus +Pseudoluteimonas lycopersici,species,Lysobacter lycopersici +Pseudoluteimonas,genus,Lysobacter +Pseudomonas acidovorans,species,Delftia acidovorans +Pseudomonas aestusnigri,species,Halopseudomonas aestusnigri +Pseudomonas akappagea,species,Pseudomonas akappageensis +Pseudomonas aminovorans,species,Aminobacter aminovorans +Pseudomonas andropogonis,species,Robbsia andropogonis +Pseudomonas antimicrobica,species,Burkholderia gladioli +Pseudomonas atagosis,species,Pseudomonas atagonensis +Pseudomonas aurantiaca,species,Pseudomonas chlororaphis subsp. aurantiaca +Pseudomonas aureofaciens,species,Pseudomonas chlororaphis subsp. aureofaciens +Pseudomonas avenae,species,Acidovorax avenae +Pseudomonas aylmerense,species,Pseudomonas aylmerensis +Pseudomonas azerbaijanoccidens,species,Pseudomonas azerbaijanoccidentalis +Pseudomonas azerbaijanoriens,species,Pseudomonas azerbaijanorientalis +Pseudomonas azotifigens,species,Stutzerimonas azotifigens +Pseudomonas balearica,species,Stutzerimonas balearica +Pseudomonas bauzanensis,species,Halopseudomonas bauzanensis +Pseudomonas beijerinckii,species,Chromohalobacter beijerinckii +Pseudomonas beteli,species,Stenotrophomonas beteli +Pseudomonas betle,species,Stenotrophomonas beteli +Pseudomonas boreopolis,species,Xanthomonas boreopolis +Pseudomonas caeni,species,Denitrificimonas caeni +Pseudomonas canavaninivorans,species,Pseudomonas alvandae +Pseudomonas carboxydohydrogena,species,Afipia carboxydohydrogena +Pseudomonas caryophylli,species,Trinickia caryophylli +Pseudomonas cattleyae,species,Acidovorax cattleyae +Pseudomonas cedrella,species,Pseudomonas cedrina +Pseudomonas cepacia,species,Burkholderia cepacia +Pseudomonas chloritidismutans,species,Stutzerimonas chloritidismutans +Pseudomonas cissicola,species,Xanthomonas cissicola +Pseudomonas cocovenenans,species,Burkholderia gladioli +Pseudomonas delafieldii,species,Acidovorax delafieldii +Pseudomonas diminuta,species,Brevundimonas diminuta +Pseudomonas doudoroffii,species,Oceanimonas doudoroffii +Pseudomonas echinoides,species,Sphingomonas echinoides +Pseudomonas elongata,species,Microbulbifer elongatus +Pseudomonas facilis,species,Acidovorax facilis +Pseudomonas flava,species,Hydrogenophaga flava +Pseudomonas flectens,species,Phaseolibacter flectens +Pseudomonas flexibilis,species,Serpens flexibilis +Pseudomonas formosensis,species,Halopseudomonas formosensis +Pseudomonas fuscovaginae,species,Pseudomonas asplenii +Pseudomonas gallaeciensis,species,Halopseudomonas gallaeciensis +Pseudomonas geniculata,species,Stenotrophomonas geniculata +Pseudomonas gladioli,species,Burkholderia gladioli +Pseudomonas glathei,species,Caballeronia glathei +Pseudomonas glumae,species,Burkholderia glumae +Pseudomonas halophila,species,Halomonas utahensis +Pseudomonas hibiscicola,species,Stenotrophomonas hibiscicola +Pseudomonas humi,species,Pseudomonas citronellolis +Pseudomonas hussainii,species,Atopomonas hussainii +Pseudomonas huttiensis,species,Herbaspirillum huttiense +Pseudomonas indigofera,species,Vogesella indigofera +Pseudomonas iners,species,Marinobacterium iners +Pseudomonas kirkiae,species,Stutzerimonas kirkiae +Pseudomonas kunmingensis,species,Stutzerimonas chloritidismutans +Pseudomonas lanceolata,species,Curvibacter lanceolatus +Pseudomonas laurylsulfatophila,species,Pseudomonas laurylsulfatiphila +Pseudomonas laurylsulfatovorans,species,Pseudomonas laurylsulfativorans +Pseudomonas lemoignei,species,Paucimonas lemoignei +Pseudomonas litoralis,species,Halopseudomonas litoralis +Pseudomonas mallei,species,Burkholderia mallei +Pseudomonas maltophilia,species,Stenotrophomonas maltophilia +Pseudomonas marianensis,species,Stutzerimonas marianensis +Pseudomonas marina,species,Cobetia marina +Pseudomonas meliae,species,Pseudomonas amygdali +Pseudomonas mephitica,species,Janthinobacterium lividum +Pseudomonas mesophilica,species,Methylobacterium mesophilicum +Pseudomonas mixta,species,Telluria mixta +Pseudomonas multiresinivorans,species,Pseudomonas nitroreducens +Pseudomonas nautica,species,Marinobacter nauticus +Pseudomonas nitritireducens,species,Pseudomonas nitroreducens +Pseudomonas nitrititolerans,species,Stutzerimonas nitrititolerans +Pseudomonas nosocomialis,species,Stutzerimonas nosocomialis +Pseudomonas oceani,species,Halopseudomonas oceani +Pseudomonas pachastrellae,species,Halopseudomonas pachastrellae +Pseudomonas palleronii,species,Hydrogenophaga palleronii +Pseudomonas panacis,species,Pseudomonas marginalis +Pseudomonas paraeruginosa,species,Pseudomonas aeruginosa +Pseudomonas paucimobilis,species,Sphingomonas paucimobilis +Pseudomonas pelagia,species,Halopseudomonas pelagia +Pseudomonas perfectomarina,species,Stutzerimonas perfectomarina +Pseudomonas pertucinogena,species,Halopseudomonas pertucinogena +Pseudomonas pharmacofabricae,species,Pseudomonas fluvialis +Pseudomonas pharmafabricae,species,Pseudomonas fluvialis +Pseudomonas phenazinia,species,Paraburkholderia phenazinia +Pseudomonas phenazinium,species,Paraburkholderia phenazinia +Pseudomonas phragmitis,species,Halopseudomonas phragmitis +Pseudomonas pickettii,species,Ralstonia pickettii +Pseudomonas pictorum,species,Stenotrophomonas pictorum +Pseudomonas piscium,species,Pseudomonas piscicola +Pseudomonas plantarii,species,Burkholderia plantarii +Pseudomonas pseudoalcaligenes,species,Pseudomonas oleovorans +Pseudomonas pseudoflava,species,Hydrogenophaga pseudoflava +Pseudomonas pseudomallei,species,Burkholderia pseudomallei +Pseudomonas pyrrocinia,species,Burkholderia pyrrocinia +Pseudomonas radiora,species,Methylobacterium radiotolerans +Pseudomonas radiotolerans,species,Methylobacterium radiotolerans +Pseudomonas rhodina,species,Methylorubrum rhodinum +Pseudomonas rhodos,species,Methylorubrum rhodinum +Pseudomonas rubrilineans,species,Acidovorax avenae +Pseudomonas rubrisubalbicans,species,Herbaspirillum rubrisubalbicans +Pseudomonas sabulinigri,species,Halopseudomonas sabulinigri +Pseudomonas saccharophila,species,Roseateles saccharophilus +Pseudomonas salegens,species,Halopseudomonas salegens +Pseudomonas salina,species,Halopseudomonas salina +Pseudomonas seleniipraecipitatus,species,Pseudomonas seleniipraecipitans +Pseudomonas shirazica,species,Pseudomonas asiatica +Pseudomonas solanacearum,species,Ralstonia solanacearum +Pseudomonas spinosa,species,Malikia spinosa +Pseudomonas stanieri,species,Marinobacterium stanieri +Pseudomonas straminae,species,Pseudomonas straminea +Pseudomonas stutzeri,species,Stutzerimonas stutzeri +Pseudomonas syzygii,species,Ralstonia syzygii +Pseudomonas taeniospiralis,species,Hydrogenophaga taeniospiralis +Pseudomonas tarimensis,species,Stutzerimonas tarimensis +Pseudomonas testosteroni,species,Comamonas testosteroni +Pseudomonas tuomuerensis,species,Serpens flexibilis +Pseudomonas urumqiensis,species,Stutzerimonas urumqiensis +Pseudomonas vesicularis,species,Brevundimonas vesicularis +Pseudomonas woodsii,species,Robbsia andropogonis +Pseudomonas xanthomarina,species,Stutzerimonas xanthomarina +Pseudomonas xanthosomae,species,Pseudomonas xanthosomatis +Pseudomonas xiamenensis,species,Halopseudomonas xiamenensis +Pseudomonas xinjiangensis,species,Halopseudomonas xinjiangensis +Pseudomonas zhaodongensis,species,Stutzerimonas zhaodongensis +Pseudonocardia antarctica,species,Pseudonocardia alni +Pseudonocardia azurea,species,Amycolatopsis azurea +Pseudonocardia bannaensis,species,Pseudonocardia bannensis +Pseudonocardia carboxydivorans,species,Pseudonocardia alni subsp. carboxydivorans +Pseudonocardia serianimatus,species,Pseudonocardia seranimata +Pseudonocardia yuanmoensis,species,Pseudonocardia yuanmonensis +Pseudonovosphingobium aquimarinum,species,Novosphingobium aquimarinum +Pseudonovosphingobium aureum,species,Novosphingobium aureum +Pseudonovosphingobium barchaimii,species,Novosphingobium barchaimii +Pseudonovosphingobium chloroacetimidivorans,species,Novosphingobium chloroacetimidivorans +Pseudonovosphingobium clariflavum,species,Novosphingobium clariflavum +Pseudonovosphingobium colocasiae,species,Novosphingobium colocasiae +Pseudonovosphingobium decolorationis,species,Novosphingobium decolorationis +Pseudonovosphingobium endophyticum,species,Novosphingobium endophyticum +Pseudonovosphingobium fluoreni,species,Novosphingobium fluoreni +Pseudonovosphingobium gossypii,species,Novosphingobium gossypii +Pseudonovosphingobium guangzhouense,species,Novosphingobium guangzhouense +Pseudonovosphingobium indicum,species,Novosphingobium indicum +Pseudonovosphingobium lindaniclasticum,species,Novosphingobium lindaniclasticum +Pseudonovosphingobium malaysiense,species,Novosphingobium malaysiense +Pseudonovosphingobium marinum,species,Novosphingobium marinum +Pseudonovosphingobium mathurense,species,Novosphingobium mathurense +Pseudonovosphingobium naphthalenivorans,species,Novosphingobium naphthalenivorans +Pseudonovosphingobium panipatense,species,Novosphingobium panipatense +Pseudonovosphingobium pentaromativorans,species,Novosphingobium pentaromativorans +Pseudonovosphingobium resinovorum,species,Novosphingobium resinovorum +Pseudonovosphingobium silvae,species,Novosphingobium silvae +Pseudonovosphingobium soli,species,Novosphingobium soli +Pseudonovosphingobium,genus,Novosphingobium +Pseudooceanicola antarcticus,species,Pseudooceanicola spongiae +Pseudopelagicola gijangensis,species,Shimia gijangensis +Pseudopelagicola,genus,Shimia +Pseudopontixanthobacter confluentis,species,Pontixanthobacter confluentis +Pseudopontixanthobacter muriae,species,Alteripontixanthobacter muriae +Pseudopontixanthobacter sediminis,species,Pontixanthobacter sediminis +Pseudopontixanthobacter,genus,Pontixanthobacter +Pseudopropionibacterium propionicum,species,Arachnia propionica +Pseudopropionibacterium rubrum,species,Arachnia rubra +Pseudopropionibacterium,genus,Arachnia +Pseudopuniceibacterium antarcticum,species,Pseudooceanicola spongiae +Pseudopuniceibacterium sediminis,species,Pseudooceanicola sediminis +Pseudopuniceibacterium,genus,Pseudooceanicola +Pseudorhodobacter aquaticus,species,Cypionkella aquatica +Pseudorhodobacter collinsensis,species,Cypionkella collinsensis +Pseudorhodobacter psychrotolerans,species,Cypionkella psychrotolerans +Pseudorhodobacter sinensis,species,Cypionkella sinensis +Pseudorivibacter rhizosphaerae,species,Methylibium rhizosphaerae +Pseudorivibacter,genus,Methylibium +Pseudoroseomonas aerofrigidensis,species,Teichococcus aerofrigidensis +Pseudoroseomonas aerophila,species,Teichococcus aerophilus +Pseudoroseomonas aestuarii,species,Teichococcus aestuarii +Pseudoroseomonas cervicalis,species,Roseomonas cervicalis +Pseudoroseomonas coralli,species,Teichococcus coralli +Pseudoroseomonas deserti,species,Teichococcus deserti +Pseudoroseomonas globiformis,species,Teichococcus globiformis +Pseudoroseomonas hibiscisoli,species,Teichococcus hibiscisoli +Pseudoroseomonas ludipueritiae,species,Teichococcus ludipueritiae +Pseudoroseomonas musae,species,Teichococcus musae +Pseudoroseomonas oryzae,species,Teichococcus oryzae +Pseudoroseomonas rhizosphaerae,species,Teichococcus rhizosphaerae +Pseudoroseomonas rubra,species,Teichococcus ruber +Pseudoroseomonas suffusca,species,Teichococcus suffuscus +Pseudoroseomonas vastitatis,species,Teichococcus vastitatis +Pseudoroseomonas wenyumeiae,species,Teichococcus wenyumeiae +Pseudoroseomonas,genus,Roseomonas +Pseudoroseovarius crassostreae,species,Aliiroseovarius crassostreae +Pseudoroseovarius halocynthiae,species,Aliiroseovarius halocynthiae +Pseudoroseovarius sediminilitoris,species,Aliiroseovarius sediminilitoris +Pseudoroseovarius zhejiangensis,species,Aliiroseovarius zhejiangensis +Pseudoroseovarius,genus,Aliiroseovarius +Pseudoruegeria marinistellae,species,Tropicimonas marinistellae +Pseudosphingobacterium domesticum,species,Olivibacter domesticus +Pseudosphingobacterium,genus,Olivibacter +Pseudosphingomonas agri,species,Sphingomonas agri +Pseudosphingomonas arenae,species,Sphingomonas arenae +Pseudosphingomonas astaxanthinifaciens,species,Sphingomonas astaxanthinifaciens +Pseudosphingomonas daechungensis,species,Sphingomonas daechungensis +Pseudosphingomonas edaphi,species,Sphingomonas edaphi +Pseudosphingomonas ginkgonis,species,Sphingomonas ginkgonis +Pseudosphingomonas ginsengisoli,species,Sphingomonas ginsengisoli +Pseudosphingomonas jaspsi,species,Sphingomonas jaspsi +Pseudosphingomonas kaistensis,species,Sphingomonas kaistensis +Pseudosphingomonas lutea,species,Sphingomonas lutea +Pseudosphingomonas mesophila,species,Sphingomonas mesophila +Pseudosphingomonas piscis,species,Sphingomonas piscis +Pseudosphingomonas rhizophila,species,Sphingomonas rhizophila +Pseudosphingomonas sabuli,species,Sphingomonas sabuli +Pseudosphingomonas segetis,species,Sphingomonas segetis +Pseudosphingomonas sinipercae,species,Sphingomonas sinipercae +Pseudosphingomonas,genus,Sphingomonas +Pseudospirillum japonicum,species,Allopseudospirillum japonicum +Pseudospirillum,genus,Allopseudospirillum +Pseudostakelama cannabina,species,Sphingomonas cannabina +Pseudostakelama floccifaciens,species,Sphingomonas floccifaciens +Pseudostakelama guangdongensis,species,Sphingomonas guangdongensis +Pseudostakelama,genus,Sphingomonas +Pseudostreptobacillus hongkongensis,species,Streptobacillus hongkongensis +Pseudostreptobacillus,genus,Streptobacillus +Pseudosulfitobacter koreense,species,Pseudosulfitobacter koreensis +Pseudotabrizicola algicola,species,Tabrizicola algicola +Pseudotabrizicola alkalilacus,species,Tabrizicola alkalilacus +Pseudotabrizicola sediminis,species,Tabrizicola sediminis +Pseudotabrizicola,genus,Tabrizicola +Psychroflexus gondwanense,species,Psychroflexus gondwanensis +Psychromonas antarcticus,species,Psychromonas antarctica +Pusillimonas faecalis,species,Pusillibacter faecalis +Pusillimonas faecipullorum,species,Mesopusillimonas faecipullorum +Pusillimonas ginsengisoli,species,Allopusillimonas ginsengisoli +Pusillimonas maritima,species,Neopusillimonas maritima +Pusillimonas,genus,Pusillibacter +Pyxicoccus fallax,species,Pyxidicoccus fallax +Pyxicoccus,genus,Pyxidicoccus +Pyxidicoccus parkwaysis,species,Pyxidicoccus parkwayensis +Qingshengfania soli,species,Pseudochelatococcus lubricantis +Qingshengfania,genus,Pseudochelatococcus +Qipengyuania aerophila,species,Qipengyuania pacifica +Quadricoccus australiensis,species,Quatrionicoccus australiensis +Quadricoccus,genus,Quatrionicoccus +Ralstonia basilensis,species,Cupriavidus basilensis +Ralstonia campinensis,species,Cupriavidus campinensis +Ralstonia edaphis,species,Ralstonia edaphi +Ralstonia eutropha,species,Wautersia eutropha +Ralstonia gilardii,species,Cupriavidus gilardii +Ralstonia mannitolytica,species,Ralstonia mannitolilytica +Ralstonia metallidurans,species,Cupriavidus metallidurans +Ralstonia oxalatica,species,Cupriavidus oxalaticus +Ralstonia oxalaticus,species,Cupriavidus oxalaticus +Ralstonia paucula,species,Cupriavidus pauculus +Ralstonia respiraculi,species,Cupriavidus respiraculi +Ralstonia taiwanensis,species,Cupriavidus taiwanensis +Raoultella electrica,species,Klebsiella electrica +Raoultella lignicola,species,Klebsiella lignicola +Raoultella ornithinolytica,species,Klebsiella ornithinolytica +Raoultella planticola,species,Klebsiella planticola +Raoultella scottia,species,Klebsiella scottii +Raoultella scottii,species,Klebsiella scottii +Raoultella terrigena,species,Klebsiella terrigena +Raoultella,genus,Klebsiella +Rathsackimonas flava,species,Aureimonas flava +Rathsackimonas galii,species,Aureimonas galii +Rathsackimonas jatrophae,species,Aureimonas jatrophae +Rathsackimonas phyllosphaerae,species,Aureimonas phyllosphaerae +Rathsackimonas pseudogalii,species,Aureimonas pseudogalii +Rathsackimonas ureilytica,species,Aureimonas ureilytica +Rathsackimonas,genus,Aureimonas +Reichenbachia agariperforans,species,Reichenbachiella agariperforans +Reichenbachia,genus,Reichenbachiella +Rheinheimera perlucida,species,Arsukibacterium perlucidum +Rheinheimera tuosuensis,species,Arsukibacterium tuosuense +Rhizobacter daucus,species,Rhizobacter dauci +Rhizobacter gummiphilus,species,Piscinibacter gummiphilus +Rhizobium alkalisoli,species,Neorhizobium alkalisoli +Rhizobium arenae,species,Pararhizobium arenae +Rhizobium azibense,species,Rhizobium gallicum +Rhizobium azooxidifex,species,Mycoplana azooxidifex +Rhizobium borbori,species,Allorhizobium borbori +Rhizobium cellulosilyticum,species,Aliirhizobium cellulosilyticum +Rhizobium ciceri,species,Mesorhizobium ciceri +Rhizobium endolithicum,species,Pseudorhizobium endolithicum +Rhizobium fabae,species,Rhizobium pisi +Rhizobium flavum,species,Pseudorhizobium flavum +Rhizobium fredii,species,Ensifer fredii +Rhizobium galegae,species,Neorhizobium galegae +Rhizobium giardinii,species,Pararhizobium giardinii +Rhizobium halophytocola,species,Heterorhizobium halophytocola +Rhizobium herbae,species,Pararhizobium herbae +Rhizobium huakuii,species,Mesorhizobium huakuii +Rhizobium huautlense,species,Neorhizobium huautlense +Rhizobium indigoferae,species,Rhizobium leguminosarum +Rhizobium japonicum,species,Bradyrhizobium japonicum +Rhizobium larrymoorei,species,Agrobacterium larrymoorei +Rhizobium loessense,species,Rhizobium mongolense subsp. loessense +Rhizobium loti,species,Mesorhizobium loti +Rhizobium marinum,species,Pseudorhizobium marinum +Rhizobium mediterraneum,species,Mesorhizobium mediterraneum +Rhizobium meliloti,species,Ensifer meliloti +Rhizobium nepotum,species,Agrobacterium nepotum +Rhizobium oryzae,species,Allorhizobium oryzae +Rhizobium oryziradicis,species,Allorhizobium oryziradicis +Rhizobium pakistanensis,species,Rhizobium pakistanense +Rhizobium paknamense,species,Allorhizobium paknamense +Rhizobium panacihumi,species,Endobacterium panacihumi +Rhizobium petrolearium,species,Neorhizobium petrolearium +Rhizobium populisoli,species,Neorhizobium populisoli +Rhizobium pseudoryzae,species,Affinirhizobium pseudoryzae +Rhizobium pusense,species,Agrobacterium pusense +Rhizobium radiobacter,species,Agrobacterium radiobacter +Rhizobium rhizoryzae,species,Affinirhizobium rhizoryzae +Rhizobium rubi,species,Agrobacterium rubi +Rhizobium selenireducens,species,Rhizobium selenitireducens +Rhizobium skierniewicense,species,Agrobacterium skierniewicense +Rhizobium smilacinae,species,Aliirhizobium smilacinae +Rhizobium taibaishanense,species,Allorhizobium taibaishanense +Rhizobium tarimense,species,Pseudorhizobium tarimense +Rhizobium tianshanense,species,Mesorhizobium tianshanense +Rhizobium trifolii,species,Rhizobium leguminosarum +Rhizobium undicola,species,Allorhizobium undicola +Rhizobium vignae,species,Neorhizobium vignae +Rhizobium vitis,species,Allorhizobium vitis +Rhizobium yantingense,species,Endobacterium yantingense +Rhizomonas suberifaciens,species,Rhizorhapis suberifaciens +Rhizomonas,genus,Rhizorhapis +Rhizorhabdus crocodyli,species,Sphingomonas crocodyli +Rhizorhabdus montanisoli,species,Sphingomonas montanisoli +Rhodoalgimonas zhirmunskyi,species,Rhodalgimonas zhirmunskyi +Rhodoalgimonas,genus,Rhodalgimonas +Rhodobaca barguzinensis,species,Roseinatronobacter bogoriensis subsp. barguzinensis +Rhodobaca bogoriensis,species,Roseinatronobacter bogoriensis +Rhodobaca,genus,Roseinatronobacter +Rhodobacter adriaticus,species,Rhodovulum adriaticum +Rhodobacter alkalitolerans,species,Cereibacter alkalitolerans +Rhodobacter azotoformans,species,Cereibacter azotoformans +Rhodobacter blastica,species,Pseudogemmobacter blasticus +Rhodobacter blasticus,species,Pseudogemmobacter blasticus +Rhodobacter changlensis,species,Cereibacter changlensis +Rhodobacter euryhalinus,species,Rhodovulum euryhalinum +Rhodobacter johrii,species,Cereibacter johrii +Rhodobacter massiliensis,species,Haematobacter massiliensis +Rhodobacter ovatus,species,Cereibacter ovatus +Rhodobacter sphaeroides,species,Cereibacter sphaeroides +Rhodobacter sulfidophilus,species,Rhodovulum sulfidophilum +Rhodobacter veldkampii,species,Phaeovulum veldkampii +Rhodobacter vinaykumarii,species,Phaeovulum vinaykumarii +Rhodobium marinum,species,Afifella marina +Rhodobium pfennigii,species,Afifella pfennigii +Rhodococcoides corynebacterioides,species,Rhodococcus corynebacterioides +Rhodococcoides fascians,species,Rhodococcus fascians +Rhodococcoides kroppenstedtii,species,Rhodococcus kroppenstedtii +Rhodococcoides kyotonense,species,Rhodococcus kyotonensis +Rhodococcoides navarretei,species,Rhodococcus navarretei +Rhodococcoides trifolii,species,Rhodococcus trifolii +Rhodococcoides yunnanense,species,Rhodococcus yunnanensis +Rhodococcoides,genus,Rhodococcus +Rhodococcus aichiense,species,Gordonia aichiensis +Rhodococcus aichiensis,species,Gordonia aichiensis +Rhodococcus aurantiacus,species,Tsukamurella paurometabola +Rhodococcus baikonurensis,species,Rhodococcus erythropolis +Rhodococcus biphenylivorans,species,Rhodococcus pyridinivorans +Rhodococcus bronchialis,species,Gordonia bronchialis +Rhodococcus cavernicola,species,Antrihabitans cavernicola +Rhodococcus chlorophenolicus,species,Mycobacterium chlorophenolicum +Rhodococcus corallinus,species,Gordonia rubripertincta +Rhodococcus degradans,species,Rhodococcus erythropolis +Rhodococcus electrodiphilus,species,Rhodococcus ruber +Rhodococcus enclensis,species,Rhodococcus erythropolis +Rhodococcus imtechensis,species,Rhodococcus opacus +Rhodococcus jialingiae,species,Rhodococcus erythropolis +Rhodococcus kunmingensis,species,Aldersonia kunmingensis +Rhodococcus luteus,species,Rhodococcus fascians +Rhodococcus maris,species,Dietzia maris +Rhodococcus percolatus,species,Rhodococcus opacus +Rhodococcus qingshengii,species,Rhodococcus erythropolis +Rhodococcus roseus,species,Rhodococcus rhodochrous +Rhodococcus rubropertinctus,species,Gordonia rubripertincta +Rhodococcus sputi,species,Gordonia sputi +Rhodococcus terrae,species,Gordonia terrae +Rhodocyclus gelatinosus,species,Rubrivivax gelatinosus +Rhodoferax ferrireducens,species,Albidiferax ferrireducens +Rhodopirellula caenicola,species,Novipirellula caenicola +Rhodopirellula rosea,species,Novipirellula rosea +Rhodoplanes piscinae,species,Rhodoplanes serenus +Rhodopseudomonas acidophila,species,Rhodoblastus acidophilus +Rhodopseudomonas adriatica,species,Rhodovulum adriaticum +Rhodopseudomonas blastica,species,Pseudogemmobacter blasticus +Rhodopseudomonas capsulata,species,Rhodobacter capsulatus +Rhodopseudomonas capsulatus,species,Rhodobacter capsulatus +Rhodopseudomonas gelatinosa,species,Rubrivivax gelatinosus +Rhodopseudomonas globiformis,species,Rhodopila globiformis +Rhodopseudomonas marina,species,Afifella marina +Rhodopseudomonas rosea,species,Rhodoplanes roseus +Rhodopseudomonas rutila,species,Rhodopseudomonas palustris +Rhodopseudomonas sphaeroides,species,Cereibacter sphaeroides +Rhodopseudomonas sulfidophila,species,Rhodovulum sulfidophilum +Rhodopseudomonas sulfoviridis,species,Blastochloris sulfoviridis +Rhodopseudomonas viridis,species,Blastochloris viridis +Rhodospirillum centenum,species,Rhodocista centenaria +Rhodospirillum fulvum,species,Magnetospirillum fulvum +Rhodospirillum molischianum,species,Magnetospirillum molischianum +Rhodospirillum oryzae,species,Pararhodospirillum oryzae +Rhodospirillum photometricum,species,Pararhodospirillum photometricum +Rhodospirillum salexigens,species,Rhodothalassium salexigens +Rhodospirillum salinarum,species,Rhodovibrio salinarum +Rhodospirillum sodomense,species,Rhodovibrio sodomensis +Rhodospirillum sulfurexigens,species,Pararhodospirillum sulfurexigens +Rhodospirillum tenue,species,Rhodocyclus tenuis +Rhodothermus obamensis,species,Rhodothermus marinus +Rickettsia buchneri,species,Rickettsia tamurae subsp. buchneri +Rickettsia canada,species,Rickettsia canadensis +Rickettsia conori,species,Rickettsia conorii +Rickettsia heilongjiangensis,species,Rickettsia conorii subsp. heilongjiangensis +Rickettsia montana,species,Rickettsia montanensis +Rickettsia raoultii,species,Rickettsia conorii subsp. raoultii +Rickettsia rickettsi,species,Rickettsia rickettsii +Rickettsia sennetsu,species,Ehrlichia sennetsu +Rickettsia tsutsugamushi,species,Orientia tsutsugamushi +Riemerella anatipestifer,species,Riemerella anatipestifera +Rivicola pingtungensis,species,Rivihabitans pingtungensis +Rivicola,genus,Rivihabitans +Robertmurraya andreesenii,species,Anoxybacillus andreesenii +Rochalimaea elizabethae,species,Bartonella elizabethae +Rochalimaea henselae,species,Bartonella henselae +Rochalimaea quintana,species,Bartonella quintana +Rochalimaea vinsonii,species,Bartonella vinsonii +Rochalimaea,genus,Bartonella +Rodentibacter heylii,species,Rodentibacter caecimuris +Roseburia lenta,species,Pararoseburia lenta +Roseibaca domitiana,species,Roseinatronobacter domitianus +Roseibaca ekhonensis,species,Roseinatronobacter ekhonensis +Roseibaca,genus,Roseinatronobacter +Roseibacterium elongatum,species,Roseicyclus elongatus +Roseibacterium persicicum,species,Roseicyclus persicicus +Roseibacterium,genus,Roseicyclus +Roseinatronobacter bogoriensis,species,Roseinatronobacter bogoriensis +Roseivirga seohaensis,species,Roseivirga ehrenbergii +Roseivirga seohaensis,species,Roseivirga ehrenbergii +Roseivivax atlanticus,species,Roseivivax marinus +Roseivivax pacificus,species,Allosediminivita pacifica +Roseivivax roseus,species,Tranquillimonas rosea +Rosenbergiella australoborealis,species,Rosenbergiella australiborealis +Roseobacter algicola,species,Marinovum algicola +Roseobacter gallaeciensis,species,Phaeobacter gallaeciensis +Roseomonas aeriglobus,species,Muricoccus aeriglobus +Roseomonas aerilata,species,Muricoccus aerilatus +Roseomonas aerofrigidensis,species,Teichococcus aerofrigidensis +Roseomonas aerophila,species,Teichococcus aerophilus +Roseomonas aestuarii,species,Teichococcus aestuarii +Roseomonas algicola,species,Falsiroseomonas algicola +Roseomonas alkaliterrae,species,Neoroseomonas alkaliterrae +Roseomonas aquatica,species,Paeniroseomonas aquatica +Roseomonas arctica,species,Plastoroseomonas arctica +Roseomonas arcticisoli,species,Falsiroseomonas arcticisoli +Roseomonas bella,species,Falsiroseomonas bella +Roseomonas coralli,species,Teichococcus coralli +Roseomonas deserti,species,Teichococcus deserti +Roseomonas eburnea,species,Neoroseomonas eburnea +Roseomonas fauriae,species,Azospirillum brasilense +Roseomonas fluminis,species,Paeniroseomonas fluminis +Roseomonas frigidaquae,species,Falsiroseomonas frigidaquae +Roseomonas globiformis,species,Teichococcus globiformis +Roseomonas harenae,species,Muricoccus harenae +Roseomonas hellenica,species,Plastoroseomonas hellenica +Roseomonas hibiscisoli,species,Teichococcus hibiscisoli +Roseomonas lacus,species,Neoroseomonas lacus +Roseomonas ludipueritiae,species,Teichococcus ludipueritiae +Roseomonas musae,species,Teichococcus musae +Roseomonas nepalensis,species,Muricoccus nepalensis +Roseomonas oleicola,species,Falsiroseomonas oleicola +Roseomonas oryzae,species,Teichococcus oryzae +Roseomonas oryzicola,species,Neoroseomonas oryzicola +Roseomonas pecuniae,species,Muricoccus pecuniae +Roseomonas ponticola,species,Falsiroseomonas ponticola +Roseomonas radiodurans,species,Muricoccus radiodurans +Roseomonas rhizosphaerae,species,Teichococcus rhizosphaerae +Roseomonas riguiloci,species,Falsiroseomonas riguiloci +Roseomonas rosea,species,Muricoccus roseus +Roseomonas rubea,species,Neoroseomonas rubea +Roseomonas rubra,species,Teichococcus ruber +Roseomonas sediminicola,species,Neoroseomonas sediminicola +Roseomonas selenitidurans,species,Falsiroseomonas selenitidurans +Roseomonas soli,species,Neoroseomonas soli +Roseomonas stagni,species,Falsiroseomonas stagni +Roseomonas suffusca,species,Teichococcus suffuscus +Roseomonas terrae,species,Neoroseomonas terrae +Roseomonas terricola,species,Falsiroseomonas terricola +Roseomonas tokyonensis,species,Falsiroseomonas tokyonensis +Roseomonas vastitatis,species,Teichococcus vastitatis +Roseomonas vinacea,species,Muricoccus vinaceus +Roseomonas wenyumeiae,species,Teichococcus wenyumeiae +Roseomonas wooponensis,species,Falsiroseomonas wooponensis +Roseovarius crassostreae,species,Aliiroseovarius crassostreae +Roseovarius halocynthiae,species,Aliiroseovarius halocynthiae +Roseovarius marinus,species,Pacificibacter marinus +Roseovarius sediminilitoris,species,Aliiroseovarius sediminilitoris +Rothia dentocariosus,species,Rothia dentocariosa +Rubrolithibacter danxiaensis,species,Rubrilithobacter danxiaensis +Rubrolithibacter,genus,Rubrilithobacter +Ruegeria algicola,species,Marinovum algicola +Ruegeria gelatinovora,species,Ruegeria gelatinovorans +Ruegeria kandeliae,species,Albibacillus kandeliae +Ruegeria lutea,species,Antarcticimicrobium luteum +Ruegeria mobilis,species,Tritonibacter mobilis +Ruegeria pelagia,species,Tritonibacter mobilis +Ruegeria scottomollicae,species,Tritonibacter scottomollicae +Rufibacter quisquiliarum,species,Rufibacter ruber +Ruminococcus albus,species,Hominimerdicola alba +Ruminococcus faecis,species,Mediterraneibacter faecis +Ruminococcus gnavus,species,Mediterraneibacter gnavus +Ruminococcus hansenii,species,Blautia hansenii +Ruminococcus hydrogenotrophicus,species,Blautia hydrogenotrophica +Ruminococcus luti,species,Blautia luti +Ruminococcus obeum,species,Blautia obeum +Ruminococcus palustris,species,Trichococcus palustris +Ruminococcus pasteurii,species,Trichococcus pasteurii +Ruminococcus productus,species,Blautia producta +Ruminococcus schinkii,species,Blautia schinkii +Sabulilitoribacter arenilitoris,species,Wocania arenilitoris +Sabulilitoribacter multivorans,species,Flaviramulus multivorans +Sabulilitoribacter,genus,Flaviramulus +Saccharococcus caldoxylosilyticus,species,Parageobacillus caldoxylosilyticus +Saccharomonospora paurometabolica,species,Saccharomonospora iraqiensis subsp. paurometabolica +Saccharopolyspora aidingensis,species,Salinifilum aidingense +Saccharopolyspora coralli,species,Allosaccharopolyspora coralli +Saccharopolyspora ghardaiensis,species,Salinifilum ghardaiense +Saccharopolyspora jiangxiensis,species,Saccharopolyspora kobensis +Saccharopolyspora lacisalsi,species,Halosaccharopolyspora lacisalsi +Saccharopolyspora spinosporotrichia,species,Saccharopolyspora erythraea +Saccharopolyspora subtropica,species,Saccharopolyspora thermophila +Saccharothrix aerocolonigenes,species,Lentzea aerocolonigenes +Saccharothrix albidocapillata,species,Lentzea albidocapillata +Saccharothrix coeruleoviolacea,species,Goodfellowiella coeruleoviolacea +Saccharothrix cryophila,species,Crossiella cryophila +Saccharothrix cryophilis,species,Crossiella cryophila +Saccharothrix flava,species,Lentzea flava +Saccharothrix tangerinus,species,Umezawaea tangerina +Saccharothrix violacea,species,Lentzea albidocapillata subsp. violacea +Saccharothrix waywayandensis,species,Lentzea waywayandensis +Sala cibi,species,Salella cibi +Sala,genus,Salella +Salegentibacter catena,species,Salinimicrobium catena +Salibacillus marismortui,species,Virgibacillus marismortui +Salibacillus salexigens,species,Virgibacillus salexigens +Salibacillus,genus,Virgibacillus +Salinarubrum litoreum,species,Salinirubrum litoreum +Salinarubrum,genus,Salinirubrum +Salinibacter iranicus,species,Salinivenus iranica +Salinibacter luteus,species,Salinivenus lutea +Salinibacterium rubrum,species,Leifsonia rubra +Salinifilum aidingensis,species,Salinifilum aidingense +Salinifilum ghardaiensis,species,Salinifilum ghardaiense +Salinilacustristhrix,genus,Salinilacustrithrix +Salinimonas chungwhensis,species,Alteromonas chungwhensis +Salinimonas iocasae,species,Alteromonas iocasae +Salinimonas lutimaris,species,Alteromonas lutimaris +Salinimonas profundi,species,Alteromonas alteriprofundi +Salinimonas sediminis,species,Alteromonas alterisediminis +Salinimonas,genus,Alteromonas +Salinisphaera halophila,species,Salinisphaera orenii +Salinivirga fredricksonii,species,Saliniramus fredricksonii +Salipiger manganoxidans,species,Salipiger marinus +Salipiger mucescens,species,Salipiger mucosus +Salipiger nanhaiensis,species,Salipiger profundus +Salipiger pacificus,species,Alloyangia pacifica +Salisediminibacterium haloalkalitolerans,species,Salisediminibacterium halotolerans +Salmonella arizonae,species,Salmonella enterica subsp. arizonae +Salmonella choleraesuis,species,Salmonella enterica +Salmonella enteritidis,species,Salmonella enterica +Salmonella paratyphi,species,Salmonella enterica +Salmonella typhi,species,Salmonella enterica +Salmonella typhimurium,species,Salmonella enterica +Sandaracinobacteroides sayramensis,species,Sandaracinobacteroides sayramense +Sandarakinotalea sediminis,species,Nonlabens tegetincola +Sandarakinotalea,genus,Nonlabens +Sanguibacter marinus,species,Flavimobilis marinus +Sanguibacter soli,species,Flavimobilis soli +Sarcobium lyticum,species,Legionella lytica +Sarcobium,genus,Legionella +Saxeibacter lacteus,species,Nakamurella lactea +Saxeibacter,genus,Nakamurella +Schauerella aestuarii,species,Achromobacter aestuarii +Schineria larvae,species,Ignatzschineria larvae +Schineria,genus,Ignatzschineria +Schlegelella aquatica,species,Caldimonas aquatica +Schlegelella brevitalea,species,Caldimonas brevitalea +Schlegelella koreensis,species,Piscinibacter koreensis +Schlegelella thermodepolymerans,species,Caldimonas thermodepolymerans +Schlegelella,genus,Caldimonas +Sedimentimonas flavescens,species,Rhodobacter flavescens +Sedimentimonas,genus,Rhodobacter +Sedimentitalea arenosa,species,Arenibacterium arenosum +Segatella albensis,species,Prevotella albensis +Segatella baroniae,species,Prevotella baroniae +Segatella bryantii,species,Prevotella bryantii +Segatella buccae,species,Prevotella buccae +Segatella cerevisiae,species,Prevotella cerevisiae +Segatella copri,species,Prevotella copri +Segatella hominis,species,Prevotella hominis +Segatella maculosa,species,Prevotella maculosa +Segatella oris,species,Prevotella oris +Segatella oulorum,species,Prevotella oulorum +Segatella paludivivens,species,Prevotella paludivivens +Segatella salivae,species,Prevotella salivae +Segatella,genus,Prevotella +Sejongia antarctica,species,Chryseobacterium antarcticum +Sejongia jeonii,species,Chryseobacterium jeonii +Sejongia marina,species,Chryseobacterium marinum +Sejongia,genus,Chryseobacterium +Seleniibacterium seleniigenes,species,Pelobacter seleniigenes +Seleniibacterium,genus,Pelobacter +Selenobaculum gbiensis,species,Anaerosinus gibii +Selenobaculum gibii,species,Anaerosinus gibii +Selenobaculum,genus,Anaerosinus +Selenomonas acidaminovorans,species,Thermanaerovibrio acidaminovorans +Sellimonas monacensis,species,Claveliimonas monacensis +Senegalemassilia anaerobia,species,Senegalimassilia anaerobia +Senegalemassilia,genus,Senegalimassilia +Serpens tuomuerensis,species,Serpens flexibilis +Serpula hyodysenteriae,species,Brachyspira hyodysenteriae +Serpula innocens,species,Brachyspira innocens +Serpula,genus,Brachyspira +Serpulina alvinipulli,species,Brachyspira alvinipulli +Serpulina hyodysenteriae,species,Brachyspira hyodysenteriae +Serpulina innocens,species,Brachyspira innocens +Serpulina intermedia,species,Brachyspira intermedia +Serpulina murdochii,species,Brachyspira murdochii +Serpulina pilosicoli,species,Brachyspira pilosicoli +Serpulina,genus,Brachyspira +Serratia glossinae,species,Serratia fonticola +Serratia marinorubra,species,Serratia rubidaea +Sheuella amnicola,species,Orrella amnicola +Sheuella,genus,Orrella +Shewanella affinis,species,Shewanella colwelliana +Shewanella alga,species,Shewanella algae +Shewanella arctica,species,Shewanella frigidimarina +Shewanella haliotis,species,Shewanella algae +Shewanella pacifica,species,Shewanella japonica +Shewanella spongiae,species,Parashewanella spongiae +Shewanella upenei,species,Shewanella algae +Shouchella gibsonii,species,Alkalicoccobacillus gibsonii +Shouchella lehensis,species,Shouchella oshimensis +Shouchella plakortidis,species,Shouchella oshimensis +Shouchella rhizosphaerae,species,Shouchella clausii +Shuttleworthia satelles,species,Shuttleworthella satelles +Shuttleworthia,genus,Shuttleworthella +Siansivirga jejunensis,species,Siansivirga jejuensis +Silicibacter lacuscaerulensis,species,Ruegeria lacuscaerulensis +Silicibacter pomeroyi,species,Ruegeria pomeroyi +Silicibacter,genus,Ruegeria +Simonsiella crassa,species,Alysiella crassa +Simonsiella steedae,species,Conchiformibius steedae +Singularimonas variicoloris,species,Solimonas variicoloris +Singularimonas,genus,Solimonas +Sinirhodobacter ferrireducens,species,Rhodobacter ferrireducens +Sinirhodobacter hankyongi,species,Rhodobacter hankyongi +Sinirhodobacter huangdaonensis,species,Rhodobacter huangdaonensis +Sinirhodobacter populi,species,Rhodobacter populi +Sinirhodobacter,genus,Rhodobacter +Sinisalibacter lacisalsi,species,Maritimibacter lacisalsi +Sinisalibacter,genus,Maritimibacter +Sinobacter flavus,species,Solimonas flava +Sinobacter,genus,Solimonas +Sinococcus qinghaiensis,species,Sinobaca qinghaiensis +Sinococcus,genus,Sinobaca +Sinorhizobium alkalisoli,species,Ensifer alkalisoli +Sinorhizobium americanum,species,Ensifer americanus +Sinorhizobium americanus,species,Ensifer americanus +Sinorhizobium arboris,species,Ensifer arboris +Sinorhizobium chiapanecum,species,Sinorhizobium chiapasense +Sinorhizobium fredii,species,Ensifer fredii +Sinorhizobium garamanticum,species,Ensifer garamanticus +Sinorhizobium glycinis,species,Ensifer glycinis +Sinorhizobium kostiense,species,Ensifer kostiensis +Sinorhizobium kummerowiae,species,Ensifer meliloti +Sinorhizobium medicae,species,Ensifer medicae +Sinorhizobium meliloti,species,Ensifer meliloti +Sinorhizobium mexicanum,species,Ensifer mexicanus +Sinorhizobium morelense,species,Ensifer morelensis +Sinorhizobium numidicum,species,Ensifer numidicus +Sinorhizobium psoraleae,species,Ensifer psoraleae +Sinorhizobium saheli,species,Ensifer saheli +Sinorhizobium shofinae,species,Ensifer shofinae +Sinorhizobium sojae,species,Ensifer sojae +Sinorhizobium teranga,species,Ensifer terangae +Sinorhizobium terangae,species,Ensifer terangae +Sinorhizobium xinjiangense,species,Ensifer fredii +Sinorhizobium xinjiangensis,species,Ensifer fredii +Sinorhizobium,genus,Ensifer +Sinorhodobacter ferrireducens,species,Rhodobacter ferrireducens +Sinorhodobacter huangdaonensis,species,Rhodobacter huangdaonensis +Sinorhodobacter populi,species,Rhodobacter populi +Sinorhodobacter,genus,Rhodobacter +Skermanella xinjiangensis,species,Deserticella xinjiangensis +Skermania piniformis,species,Skermania pinensis +Solilutibacter pythonis,species,Lysobacter pythonis +Solilutibacter silvestris,species,Lysobacter silvestris +Solilutibacter tolerans,species,Lysobacter tolerans +Solilutibacter,genus,Lysobacter +Solisphingomonas chungangi,species,Sphingomonas chungangi +Solisphingomonas morindae,species,Sphingomonas morindae +Solisphingomonas oligoaromativorans,species,Sphingomonas oligoaromativorans +Solisphingomonas quercus,species,Sphingomonas quercus +Solisphingomonas,genus,Sphingomonas +Soonwooa buanensis,species,Chryseobacterium buanense +Soonwooa,genus,Chryseobacterium +Sorangium aterium,species,Sorangium atrum +Spectribacter hydrogenooxidans,species,Spectribacter hydrogenoxidans +Spelaeibacter cavernicola,species,Antrihabitans cavernicola +Spelaeibacter,genus,Antrihabitans +Sphaerochaeta multiformis,species,Pleomorphochaeta multiformis +Sphaerosporangium cinnabarinum,species,Sphaerisporangium cinnabarinum +Sphaerosporangium melleum,species,Sphaerisporangium melleum +Sphaerosporangium rubeum,species,Sphaerisporangium rubeum +Sphaerosporangium viridialbum,species,Sphaerisporangium viridialbum +Sphaerosporangium,genus,Sphaerisporangium +Sphaerotilus sulfidivorans,species,Sphaerotilus natans subsp. sulfidivorans +Sphingobacterium antarcticum,species,Pedobacter antarcticus +Sphingobacterium antarcticus,species,Pedobacter antarcticus +Sphingobacterium cladoniae,species,Sphingobacterium siyangense subsp. cladoniae +Sphingobacterium composti,species,Sphingobacterium allocomposti +Sphingobacterium heparinum,species,Pedobacter heparinus +Sphingobacterium mizutae,species,Sphingobacterium mizutaii +Sphingobacterium piscium,species,Pedobacter antarcticus +Sphingobacterium soli,species,Sphingobacterium cellulitidis +Sphingobium algicola,species,Sphingobium limneticum +Sphingobium baderi,species,Sphingobium wenxiniae +Sphingobium barthaii,species,Sphingobium fuliginis +Sphingobium chinhatense,species,Sphingobium indicum +Sphingobium czechense,species,Sphingobium cupriresistens +Sphingobium endophyticus,species,Sphingobium endophyticum +Sphingobium francense,species,Sphingobium indicum +Sphingobium hydrophobicum,species,Sphingobium xenophagum +Sphingobium japonicum,species,Sphingobium indicum +Sphingobium lucknowense,species,Sphingobium indicum +Sphingobium paulinellae,species,Sphingobium limneticum +Sphingobium suberifaciens,species,Rhizorhapis suberifaciens +Sphingomonas aeria,species,Sphingomonas carotinifaciens +Sphingomonas alaskensis,species,Sphingopyxis alaskensis +Sphingomonas aromaticivorans,species,Novosphingobium aromaticivorans +Sphingomonas capsulata,species,Novosphingobium capsulatum +Sphingomonas caseinilyticus,species,Sphingomonas caseinilytica +Sphingomonas chlorophenolica,species,Sphingobium chlorophenolicum +Sphingomonas chungbukensis,species,Sphingobium chungbukense +Sphingomonas cloacae,species,Sphingobium cloacae +Sphingomonas flavus,species,Sphingomonas flava +Sphingomonas herbicidovorans,species,Sphingobium herbicidovorans +Sphingomonas histidinilytica,species,Rhizorhabdus histidinilytica +Sphingomonas indica,species,Allosphingosinicella indica +Sphingomonas kyeonggiense,species,Sphingomonas kyeonggiensis +Sphingomonas macrogolitabida,species,Sphingopyxis macrogoltabida +Sphingomonas macrogoltabida,species,Sphingopyxis macrogoltabida +Sphingomonas macrogoltabidus,species,Sphingopyxis macrogoltabida +Sphingomonas natatoria,species,Blastomonas natatoria +Sphingomonas rosa,species,Novosphingobium rosa +Sphingomonas roseoflava,species,Sphingomonas roseiflava +Sphingomonas sanguis,species,Sphingomonas sanguinis +Sphingomonas starnbergensis,species,Rhizorhabdus starnbergensis +Sphingomonas stygia,species,Novosphingobium aromaticivorans +Sphingomonas subarctica,species,Novosphingobium resinovorum +Sphingomonas suberifaciens,species,Rhizorhapis suberifaciens +Sphingomonas subterranea,species,Novosphingobium subterraneum +Sphingomonas taejonensis,species,Sphingopyxis taejonensis +Sphingomonas terrae,species,Sphingopyxis terrae +Sphingomonas ursincola,species,Blastomonas ursincola +Sphingomonas wittichii,species,Rhizorhabdus wittichii +Sphingomonas xenophaga,species,Sphingobium xenophagum +Sphingomonas yanoikuyae,species,Sphingobium yanoikuyae +Sphingopyxis baekryungensis,species,Novosphingopyxis baekryungensis +Sphingopyxis contaminans,species,Sphingorhabdus contaminans +Sphingopyxis flavimaris,species,Parasphingorhabdus flavimaris +Sphingopyxis litoris,species,Parasphingorhabdus litoris +Sphingopyxis lutea,species,Sphingopyxis jiangsuensis +Sphingopyxis marina,species,Parasphingorhabdus marina +Sphingopyxis rigui,species,Sphingorhabdus rigui +Sphingopyxis wooponensis,species,Sphingorhabdus wooponensis +Sphingorhabdus flavimaris,species,Parasphingorhabdus flavimaris +Sphingorhabdus litoris,species,Parasphingorhabdus litoris +Sphingorhabdus marina,species,Parasphingorhabdus marina +Sphingorhabdus pacifica,species,Parasphingorhabdus pacifica +Sphingorhabdus pacificus,species,Parasphingorhabdus pacifica +Sphingosinicella vermicomposti,species,Allosphingosinicella vermicomposti +Sphingosinithalassobacter portus,species,Stakelama portus +Sphingosinithalassobacter tenebrarum,species,Stakelama tenebrarum +Sphingosinithalassobacter,genus,Stakelama +Spiribacter aquaticus,species,Spiribacter roseus +Spiribacter halobius,species,Sediminicurvatus halobius +Spirochaeta alkalica,species,Alkalispirochaeta alkalica +Spirochaeta americana,species,Alkalispirochaeta americana +Spirochaeta bajacaliforniensis,species,Sediminispirochaeta bajacaliforniensis +Spirochaeta caldaria,species,Gracilinema caldarium +Spirochaeta caldarium,species,Gracilinema caldarium +Spirochaeta coccoides,species,Sphaerochaeta coccoides +Spirochaeta litoralis,species,Oceanispirochaeta litoralis +Spirochaeta odontotermitis,species,Alkalispirochaeta odontotermitis +Spirochaeta perfilievii,species,Thiospirochaeta perfilievii +Spirochaeta sinaica,species,Sediminispirochaeta sinaica +Spirochaeta smaragdinae,species,Sediminispirochaeta smaragdinae +Spirochaeta sphaeroplastigenens,species,Alkalispirochaeta sphaeroplastigenens +Spirochaeta stenostrepta,species,Treponema stenostreptum +Spirochaeta stenostreptum,species,Treponema stenostreptum +Spirochaeta zuelzerae,species,Teretinema zuelzerae +Spiroplasma atrichopogonis,species,Spiroplasma mirum +Spirosoma daeguensis,species,Spirosoma daeguense +Spirosoma metallicus,species,Spirosoma metallicum +Spongiibacter borealis,species,Zhongshania borealis +Spongiibacterium flavum,species,Flagellimonas flava +Spongiibacterium pacificum,species,Flagellimonas pacifica +Spongiibacterium,genus,Flagellimonas +Sporohalobacter marismortui,species,Orenia marismortui +Sporosarcina antarctica,species,Paenisporosarcina antarctica +Sporosarcina halophila,species,Halobacillus halophilus +Sporosarcina macmurdoensis,species,Paenisporosarcina macmurdoensis +Sporotalea propionica,species,Pelosinus propionicus +Sporotalea,genus,Pelosinus +Stagnihabitans tardus,species,Rhodobacter tardus +Stagnihabitans,genus,Rhodobacter +Staleya guttiformis,species,Sulfitobacter guttiformis +Staleya,genus,Sulfitobacter +Stanierella latercula,species,Aquimarina latercula +Stanierella,genus,Aquimarina +Staphylococcus caseolyticus,species,Macrococcus caseolyticus +Staphylococcus jettensis,species,Staphylococcus petrasii +Staphylococcus pulvereri,species,Staphylococcus vitulinus +Staphylococcus roterodami,species,Staphylococcus aureus +Staphylococcus singaporensis,species,Staphylococcus argenteus +Staphylococcus urealyticus,species,Staphylococcus ureilyticus +Staphylococcus vitulus,species,Staphylococcus vitulinus +Stappia aggregata,species,Roseibium aggregatum +Stappia alba,species,Roseibium album +Stappia marina,species,Roseibium marinum +Starkeya koreensis,species,Ancylobacter koreensis +Starkeya novella,species,Ancylobacter novellus +Starkeya,genus,Ancylobacter +Stella humosa,species,Allostella humosa +Stella vacuolata,species,Allostella vacuolata +Stella,genus,Allostella +Stenothermobacter spongiae,species,Nonlabens spongiae +Stenothermobacter,genus,Nonlabens +Stenotrophomonas africana,species,Stenotrophomonas maltophilia +Stenotrophomonas dokdonensis,species,Pseudoxanthomonas dokdonensis +Stigmatella ashevillena,species,Stigmatella ashevillensis +Stomatococcus mucilaginosus,species,Rothia mucilaginosa +Stomatococcus,genus,Rothia +Streptacidiphilus bronchialis,species,Peterkaempfera bronchialis +Streptacidiphilus griseoplanus,species,Peterkaempfera griseoplana +Streptacidiphilus toruniensis,species,Streptacidiphilus torunensis +Streptantibioticus parmotrematis,species,Streptomyces parmotrematis +Streptimonospora salina,species,Streptomonospora salina +Streptimonospora,genus,Streptomonospora +Streptococcus adiacens,species,Granulicatella adiacens +Streptococcus adjacens,species,Granulicatella adiacens +Streptococcus atopica,species,Streptococcus atopicus +Streptococcus bovis,species,Streptococcus equinus +Streptococcus caprinus,species,Streptococcus gallolyticus +Streptococcus cecorum,species,Enterococcus cecorum +Streptococcus chosunense,species,Streptococcus mitis +Streptococcus chosunensis,species,Streptococcus mitis +Streptococcus cremoris,species,Lactococcus cremoris +Streptococcus cricetus,species,Streptococcus criceti +Streptococcus crista,species,Streptococcus cristatus +Streptococcus defectivus,species,Abiotrophia defectiva +Streptococcus dentisani,species,Streptococcus oralis subsp. dentisani +Streptococcus difficile,species,Streptococcus agalactiae +Streptococcus difficilis,species,Streptococcus agalactiae +Streptococcus downii,species,Streptococcus oralis subsp. dentisani +Streptococcus durans,species,Enterococcus durans +Streptococcus faecalis,species,Enterococcus faecalis +Streptococcus faecium,species,Enterococcus faecium +Streptococcus gallinarum,species,Enterococcus gallinarum +Streptococcus garvieae,species,Lactococcus garvieae +Streptococcus gwangjuense,species,Streptococcus mitis +Streptococcus gwangjuensis,species,Streptococcus mitis +Streptococcus hansenii,species,Blautia hansenii +Streptococcus hohhotensis,species,Streptococcus mitis +Streptococcus humanilactis,species,Streptococcus mitis +Streptococcus intestinalis,species,Streptococcus alactolyticus +Streptococcus lactis,species,Lactococcus lactis +Streptococcus macedonicus,species,Streptococcus gallolyticus subsp. macedonicus +Streptococcus morbillorum,species,Gemella morbillorum +Streptococcus nakanoensis,species,Streptococcus thalassemiae +Streptococcus nakanonensis,species,Streptococcus thalassemiae +Streptococcus oligofermentans,species,Streptococcus cristatus +Streptococcus parapneumoniae,species,Streptococcus thalassemiae +Streptococcus parasanguis,species,Streptococcus parasanguinis +Streptococcus parvulus,species,Lancefieldella parvula +Streptococcus pasteurianus,species,Streptococcus gallolyticus subsp. pasteurianus +Streptococcus pharyngis,species,Streptococcus cuniculipharyngis +Streptococcus plantarum,species,Pseudolactococcus plantarum +Streptococcus pleomorphus,species,Faecalicoccus pleomorphus +Streptococcus raffinolactis,species,Pseudolactococcus raffinolactis +Streptococcus rattus,species,Streptococcus ratti +Streptococcus saccharolyticus,species,Enterococcus saccharolyticus +Streptococcus sanguis,species,Streptococcus sanguinis +Streptococcus shiloi,species,Streptococcus iniae +Streptococcus tigurinus,species,Streptococcus oralis subsp. tigurinus +Streptococcus toyakuensis,species,Streptococcus mitis +Streptococcus waius,species,Streptococcus gallolyticus subsp. macedonicus +Streptomonospora halotolerans,species,Streptomonospora nanhaiensis +Streptomyces aburaviensis,species,Kitasatospora aburaviensis +Streptomyces acrimycini,species,Streptomyces griseus +Streptomyces albidocamelliae,species,Streptomyces albidicamelliae +Streptomyces albireticuli,species,Streptomyces eurocidicus +Streptomyces albolongus,species,Kitasatospora albolonga +Streptomyces albosporeus,species,Streptomyces aurantiacus +Streptomyces alboverticillatus,species,Streptomyces griseocarneus +Streptomyces albovinaceus,species,Streptomyces globisporus +Streptomyces alboviridis,species,Streptomyces microflavus +Streptomyces albulus,species,Streptomyces noursei +Streptomyces almquistii,species,Streptomyces albus +Streptomyces aminophilus,species,Streptomyces cacaoi +Streptomyces annulatus,species,Streptomyces anulatus +Streptomyces anthocyanicus,species,Streptomyces violaceoruber +Streptomyces aomiensis,species,Yinghuangia aomiensis +Streptomyces arabicus,species,Streptomyces vinaceus +Streptomyces argyrophyllae,species,Streptomyces argyrophylli +Streptomyces asterosporus,species,Streptomyces calvus +Streptomyces atroaurantiacus,species,Kitasatospora atroaurantiaca +Streptomyces aureofaciens,species,Kitasatospora aureofaciens +Streptomyces aureorectus,species,Streptomyces calvus +Streptomyces aureoversales,species,Streptomyces hiroshimensis +Streptomyces aureoversilis,species,Streptomyces hiroshimensis +Streptomyces avellaneus,species,Kitasatospora aureofaciens +Streptomyces avermectinius,species,Streptomyces avermitilis +Streptomyces azaticus,species,Kitasatospora azatica +Streptomyces baarnensis,species,Streptomyces griseus +Streptomyces baldacii,species,Streptomyces baldaccii +Streptomyces bambergiensis,species,Streptomyces prasinus +Streptomyces biverticillatus,species,Streptomyces hiroshimensis +Streptomyces bobiliae,species,Streptomyces bobili +Streptomyces caeruleus,species,Actinoalloteichus caeruleus +Streptomyces canchipurensis,species,Streptomyces muensis +Streptomyces canescens,species,Streptomyces albidoflavus +Streptomyces catbensis,species,Yinghuangia catbensis +Streptomyces caviscabies,species,Streptomyces griseus +Streptomyces champavatii,species,Streptomyces albidoflavus +Streptomyces chibaensis,species,Streptomyces corchorusii +Streptomyces chrysomallus,species,Streptomyces anulatus +Streptomyces cinereorectus,species,Kitasatospora cinereorecta +Streptomyces cinnamonensis,species,Streptomyces virginiae +Streptomyces ciscaucasicus,species,Streptomyces canus +Streptomyces citreofluorescens,species,Streptomyces anulatus +Streptomyces cochleatus,species,Kitasatospora cinereorecta +Streptomyces coelescens,species,Streptomyces violaceoruber +Streptomyces coelicolor,species,Streptomyces albidoflavus +Streptomyces colombiensis,species,Streptomyces lavendulae subsp. colombiensis +Streptomyces costaricanus,species,Streptomyces murinus +Streptomyces cyanoalbus,species,Streptomyces hirsutus +Streptomyces cystargineus,species,Kitasatospora cystarginea +Streptomyces demainii,species,Streptomyces hygroscopicus subsp. sporocinereus +Streptomyces distallicus,species,Streptomyces netropsis +Streptomyces ederensis,species,Streptomyces phaeochromogenes +Streptomyces ehimensis,species,Streptomyces abikoensis +Streptomyces ekimensis,species,Streptomyces abikoensis +Streptomyces emeiensis,species,Streptomyces prasinopilosus +Streptomyces endus,species,Streptomyces hygroscopicus +Streptomyces enissocaesilis,species,Streptomyces rochei +Streptomyces erumpens,species,Streptomyces griseus +Streptomyces erythraeus,species,Saccharopolyspora erythraea +Streptomyces erythreus,species,Saccharopolyspora erythraea +Streptomyces erythrogriseus,species,Streptomyces griseoincarnatus +Streptomyces felleus,species,Streptomyces albidoflavus +Streptomyces ferralitis,species,Streptantibioticus ferralitis +Streptomyces fervens,species,Streptomyces hiroshimensis +Streptomyces fimicarius,species,Streptomyces griseus +Streptomyces flavidofuscus,species,Nocardiopsis dassonvillei +Streptomyces flavofuscus,species,Streptomyces griseus +Streptomyces flavogriseus,species,Streptomyces flavovirens +Streptomyces flavopersicus,species,Streptomyces netropsis +Streptomyces flavovariabilis,species,Streptomyces variegatus +Streptomyces flavoviridis,species,Streptomyces pilosus +Streptomyces flocculus,species,Streptomyces albus +Streptomyces floridae,species,Streptomyces californicus +Streptomyces fluorescens,species,Streptomyces anulatus +Streptomyces fulvissimus,species,Streptomyces microflavus +Streptomyces galilaeus,species,Streptomyces bobili +Streptomyces geysiriensis,species,Streptomyces rochei +Streptomyces ghanaensis,species,Streptomyces viridosporus +Streptomyces gibsonii,species,Streptomyces albus +Streptomyces glomeroaurantiacus,species,Streptomyces aurantiacus +Streptomyces gougeroti,species,Streptomyces diastaticus +Streptomyces gougerotii,species,Streptomyces diastaticus +Streptomyces graminofaciens,species,Streptomyces halstedii +Streptomyces griseinus,species,Streptomyces globisporus +Streptomyces griseobrunneus,species,Streptomyces bacillaris +Streptomyces griseofuscus,species,Streptomyces murinus +Streptomyces griseolosporeus,species,Kitasatospora griseola +Streptomyces griseolus,species,Streptomyces halstedii +Streptomyces griseoplanus,species,Peterkaempfera griseoplana +Streptomyces griseorubens,species,Streptomyces althioticus +Streptomyces griseoverticillatus,species,Streptomyces cinnamoneus +Streptomyces griseoviridus,species,Streptomyces griseoviridis +Streptomyces hachijoensis,species,Streptomyces cinnamoneus +Streptomyces herbaricolor,species,Kitasatospora herbaricolor +Streptomyces humiferus,species,Streptomyces violaceoruber +Streptomyces indiaensis,species,Streptosporangium indianense +Streptomyces indigoferus,species,Kitasatospora indigofera +Streptomyces ipomoea,species,Streptomyces ipomoeae +Streptomyces janthinus,species,Streptomyces violaceus +Streptomyces kashimirensis,species,Streptomyces lilacinus +Streptomyces kashmirensis,species,Streptomyces lilacinus +Streptomyces kasugaensis,species,Streptomyces celluloflavus +Streptomyces kentuckensis,species,Streptomyces netropsis +Streptomyces kifunensis,species,Kitasatospora kifunensis +Streptomyces kishiwadensis,species,Streptomyces mashuensis +Streptomyces laceyi,species,Streptomyces niveus +Streptomyces ladakanum,species,Streptomyces mobaraensis +Streptomyces ladakanus,species,Streptomyces mobaraensis +Streptomyces libani,species,Streptomyces nigrescens +Streptomyces limosus,species,Streptomyces albidoflavus +Streptomyces lipmanii,species,Streptomyces microflavus +Streptomyces luridiscabiei,species,Streptomyces microflavus +Streptomyces luteoverticillatus,species,Streptomyces abikoensis +Streptomyces luteus,species,Streptomyces mutabilis +Streptomyces matensis,species,Streptomyces althioticus +Streptomyces mediocidicus,species,Kitasatospora mediocidica +Streptomyces mediolani,species,Streptomyces globisporus +Streptomyces melanogenes,species,Streptomyces noboritoensis +Streptomyces michiganensis,species,Streptomyces xanthochromogenes +Streptomyces misakiensis,species,Kitasatospora misakiensis +Streptomyces mordarskii,species,Streptomyces antimycoticus subsp. mordarskii +Streptomyces morookaense,species,Streptomyces morookaensis +Streptomyces nashvillensis,species,Streptomyces tanashiensis +Streptomyces nigrifaciens,species,Streptomyces flavovirens +Streptomyces odorifer,species,Streptomyces albidoflavus +Streptomyces olivochromogenus,species,Streptomyces olivochromogenes +Streptomyces olivoreticuli,species,Streptomyces abikoensis +Streptomyces olivoviridis,species,Streptomyces atroolivaceus +Streptomyces pactum,species,Streptomyces pactus +Streptomyces paracochleatus,species,Kitasatospora paracochleata +Streptomyces parvisporogenes,species,Streptomyces abikoensis +Streptomyces parvullus,species,Streptomyces parvulus +Streptomyces phaeogriseichromatogenes,species,Streptomyces murinus +Streptomyces phaeopurpureus,species,Streptomyces griseorubiginosus +Streptomyces phaeoviridis,species,Streptomyces griseorubiginosus +Streptomyces pharetrae,species,Streptomyces glaucescens +Streptomyces phosalacineus,species,Kitasatospora phosalacinea +Streptomyces plicatus,species,Streptomyces rochei +Streptomyces praecox,species,Streptomyces anulatus +Streptomyces psammoticus,species,Kitasatospora aureofaciens +Streptomyces purpeofuscus,species,Kitasatospora purpeofusca +Streptomyces purpurogeniscleroticus,species,Streptomyces purpurogeneiscleroticus +Streptomyces rangoon,species,Streptomyces albus +Streptomyces rangoonensis,species,Streptomyces albus +Streptomyces rectiverticillatus,species,Streptomyces hiroshimensis +Streptomyces rhizosphaerius,species,Streptomyces rhizosphaericus +Streptomyces roseoalbus,species,Streptomyces rosealbus +Streptomyces roseodiastaticus,species,Streptomyces violaceoruber +Streptomyces roseoflavus,species,Streptomyces fradiae +Streptomyces roseosporus,species,Streptomyces filamentosus +Streptomyces roseoverticillatus,species,Streptomyces hiroshimensis +Streptomyces ruanii,species,Streptomyces nigrescens +Streptomyces rubrisoli,species,Streptantibioticus rubrisoli +Streptomyces rubrum,species,Streptomyces rubrus +Streptomyces rutgersensis,species,Streptomyces diastaticus +Streptomyces salmonis,species,Streptomyces hiroshimensis +Streptomyces sampsonii,species,Streptomyces albidoflavus +Streptomyces samsunensis,species,Streptomyces malaysiensis subsp. samsunensis +Streptomyces sapporonensis,species,Streptomyces cinnamoneus +Streptomyces scabies,species,Streptomyces scabiei +Streptomyces scabrisporus,species,Embleya scabrispora +Streptomyces septatus,species,Streptomyces griseocarneus +Streptomyces seranimatus,species,Yinghuangia seranimata +Streptomyces serianimatus,species,Yinghuangia seranimata +Streptomyces setae,species,Kitasatospora setae +Streptomyces setonii,species,Streptomyces griseus +Streptomyces solisilvae,species,Streptomyces malaysiensis +Streptomyces spheroides,species,Streptomyces niveus +Streptomyces spitsbergensis,species,Streptomyces hiroshimensis +Streptomyces sporocinereus,species,Streptomyces hygroscopicus subsp. sporocinereus +Streptomyces sporoclivatus,species,Streptomyces antimycoticus subsp. sporoclivatus +Streptomyces sporoverrucosus,species,Streptomyces goshikiensis +Streptomyces stelliscabiei,species,Streptomyces bottropensis +Streptomyces syringium,species,Streptomyces netropsis +Streptomyces syringius,species,Streptomyces netropsis +Streptomyces thermonitrificans,species,Streptomyces thermovulgaris +Streptomyces thermospinisporus,species,Streptomyces thermospinosisporus +Streptomyces tricolor,species,Streptomyces violaceoruber +Streptomyces tyrosinilyticus,species,Wenjunlia tyrosinilytica +Streptomyces variabilis,species,Streptomyces griseoincarnatus +Streptomyces vinaceusdrappus,species,Streptomyces rochei +Streptomyces violaceolatus,species,Streptomyces violaceoruber +Streptomyces violaceoniger,species,Streptomyces violaceusniger +Streptomyces violatus,species,Streptomyces violaceus +Streptomyces viridiflavus,species,Streptomyces olivoverticillatus +Streptomyces viridodiastaticus,species,Streptomyces albogriseolus +Streptomyces viridoflavum,species,Streptomyces olivoverticillatus +Streptomyces vitaminophileus,species,Wenjunlia vitaminophila +Streptomyces vitaminophilus,species,Wenjunlia vitaminophila +Streptomyces willmorei,species,Streptomyces microflavus +Streptomyces xanthocidicus,species,Kitasatospora xanthocidica +Streptosporangium albidum,species,Kutzneria albida +Streptosporangium claviforme,species,Herbidospora cretacea +Streptosporangium corrugatum,species,Acrocarpospora corrugata +Streptosporangium indianensis,species,Streptosporangium indianense +Streptosporangium soli,species,Dolomitihabitans soli +Streptosporangium viridialbum,species,Sphaerisporangium viridialbum +Streptosporangium viridogriseum,species,Kutzneria viridogrisea +Streptoverticillium abikoense,species,Streptomyces abikoensis +Streptoverticillium albireticuli,species,Streptomyces eurocidicus +Streptoverticillium alboverticillatum,species,Streptomyces griseocarneus +Streptoverticillium album,species,Streptomyces luteosporeus +Streptoverticillium ardum,species,Streptomyces ardus +Streptoverticillium aureoversales,species,Streptomyces hiroshimensis +Streptoverticillium aureoversile,species,Streptomyces hiroshimensis +Streptoverticillium baldaccii,species,Streptomyces baldaccii +Streptoverticillium biverticillatum,species,Streptomyces hiroshimensis +Streptoverticillium blastmyceticum,species,Streptomyces blastmyceticus +Streptoverticillium cinnamoneum,species,Streptomyces cinnamoneus +Streptoverticillium distallicum,species,Streptomyces netropsis +Streptoverticillium ehimense,species,Streptomyces abikoensis +Streptoverticillium eurocidicum,species,Streptomyces eurocidicus +Streptoverticillium fervens,species,Streptomyces hiroshimensis +Streptoverticillium flavopersicum,species,Streptomyces netropsis +Streptoverticillium griseocarneum,species,Streptomyces griseocarneus +Streptoverticillium griseoverticillatum,species,Streptomyces cinnamoneus +Streptoverticillium hachijoense,species,Streptomyces cinnamoneus +Streptoverticillium hiroshimense,species,Streptomyces hiroshimensis +Streptoverticillium kashmirense,species,Streptomyces lilacinus +Streptoverticillium kashmirensis,species,Streptomyces lilacinus +Streptoverticillium kentuckense,species,Streptomyces netropsis +Streptoverticillium kishiwadense,species,Streptomyces mashuensis +Streptoverticillium ladakanum,species,Streptomyces mobaraensis +Streptoverticillium ladakanus,species,Streptomyces mobaraensis +Streptoverticillium lavenduligriseum,species,Streptomyces lavenduligriseus +Streptoverticillium lilacinum,species,Streptomyces lilacinus +Streptoverticillium luteoverticillatum,species,Streptomyces abikoensis +Streptoverticillium mashuense,species,Streptomyces mashuensis +Streptoverticillium mobaraense,species,Streptomyces mobaraensis +Streptoverticillium morookaense,species,Streptomyces morookaensis +Streptoverticillium netropsis,species,Streptomyces netropsis +Streptoverticillium olivomycini,species,Streptomyces olivomycini +Streptoverticillium olivoreticuli,species,Streptomyces abikoensis +Streptoverticillium olivoreticulum,species,Streptomyces abikoensis +Streptoverticillium olivoverticillatum,species,Streptomyces olivoverticillatus +Streptoverticillium orinoci,species,Streptomyces orinoci +Streptoverticillium parvisporogenes,species,Streptomyces abikoensis +Streptoverticillium parvisporogenum,species,Streptomyces abikoensis +Streptoverticillium rectiverticillatum,species,Streptomyces hiroshimensis +Streptoverticillium roseoverticillatum,species,Streptomyces hiroshimensis +Streptoverticillium salmonis,species,Streptomyces hiroshimensis +Streptoverticillium sapporonense,species,Streptomyces cinnamoneus +Streptoverticillium septatum,species,Streptomyces griseocarneus +Streptoverticillium syringium,species,Streptomyces netropsis +Streptoverticillium thioluteum,species,Streptomyces thioluteus +Streptoverticillium viridoflavum,species,Streptomyces olivoverticillatus +Streptoverticillium,genus,Streptomyces +Stutzerimonas kunmingensis,species,Stutzerimonas chloritidismutans +Subtercola pratensis,species,Agreia pratensis +Suipraoptans intestinalis,species,Suipraeoptans intestinalis +Suipraoptans,genus,Suipraeoptans +Sulfitobacter algicola,species,Parasulfitobacter algicola +Sulfitobacter pseudonitzschiae,species,Pseudosulfitobacter pseudonitzschiae +Sulfobacillus disulfidooxidans,species,Alicyclobacillus disulfidooxidans +Sulfolobus brierleyi,species,Acidianus brierleyi +Sulfolobus hakonensis,species,Metallosphaera hakonensis +Sulfolobus metallicus,species,Sulfuracidifex metallicus +Sulfolobus shibatae,species,Saccharolobus shibatae +Sulfolobus solfataricus,species,Saccharolobus solfataricus +Sulfolobus tokodaii,species,Sulfurisphaera tokodaii +Sulfuriferula plumbophilus,species,Sulfuriferula plumbiphila +Sulfurococcus yellowstonii,species,Sulfurococcus yellowstonensis +Sulfurospirillum carboxydovorans,species,Sulfurospirillum carboxydivorans +Sulfurospirillum tamanensis,species,Sulfurospirillum tamanense +Suonthocola fibrivorans,species,Diplocloster agilis +Suonthocola,genus,Diplocloster +Sutcliffiella tianshenii,species,Bacillus tianshenii +Symbioplanes lichenis,species,Actinoplanes lichenis +Symbioplanes,genus,Actinoplanes +Symbiotes lectularia,species,Symbiotes lectularius +Synoicihabitans lomoniglobus,species,Actomonas lomoniglobus +Synoicihabitans,genus,Actomonas +Syntrophobacter sulfatireducens,species,Syntrophobacterium sulfatireducens +Tabrizicola blastica,species,Pseudogemmobacter blasticus +Tabrizicola flagellata,species,Rhodobacter flagellatus +Tabrizicola flagellatus,species,Rhodobacter flagellatus +Tabrizicola soli,species,Xinfangfangia soli +Tabrizicola thermarum,species,Rhodobacter thermarum +Tamlana agarivorans,species,Pseudotamlana agarivorans +Tamlana carrageenivorans,species,Pseudotamlana carrageenivorans +Tamlana haliotis,species,Pseudotamlana haliotis +Tamlicoccus marinus,species,Barrientosiimonas marina +Tamlicoccus,genus,Barrientosiimonas +Tannerella forsythensis,species,Tannerella forsythia +Tatlockia maceachernii,species,Legionella maceachernii +Tatlockia micdadei,species,Legionella micdadei +Tatlockia,genus,Legionella +Teichococcus cervicalis,species,Roseomonas cervicalis +Telluria aerilata,species,Massilia aerilata +Telluria agilis,species,Massilia agilis +Telluria agri,species,Massilia agri +Telluria alkalitolerans,species,Massilia alkalitolerans +Telluria arenae,species,Massilia arenae +Telluria arvi,species,Massilia arvi +Telluria aurea,species,Massilia aurea +Telluria brevitalea,species,Massilia brevitalea +Telluria cellulosilytica,species,Massilia cellulosilytica +Telluria chloroacetimidivorans,species,Massilia chloroacetimidivorans +Telluria consociata,species,Massilia consociata +Telluria forsythiae,species,Massilia forsythiae +Telluria haematophila,species,Massilia haematophila +Telluria horti,species,Massilia horti +Telluria jejuensis,species,Massilia jejuensis +Telluria kyonggiensis,species,Massilia kyonggiensis +Telluria neuiana,species,Massilia neuiana +Telluria niabensis,species,Massilia niabensis +Telluria niastensis,species,Massilia niastensis +Telluria norwichensis,species,Massilia norwichensis +Telluria oculi,species,Massilia oculi +Telluria phosphatilytica,species,Massilia phosphatilytica +Telluria pinisoli,species,Massilia pinisoli +Telluria puerhi,species,Massilia puerhi +Telluria putida,species,Massilia putida +Telluria rhizosphaerae,species,Massilia rhizosphaerae +Telluria solisilvae,species,Massilia solisilvae +Telluria suwonensis,species,Massilia suwonensis +Telluria terrae,species,Massilia terrae +Telluria tieshanensis,species,Massilia tieshanensis +Telluria timonae,species,Massilia timonae +Telluria varians,species,Massilia varians +Telluria yuzhufengensis,species,Massilia yuzhufengensis +Tellurirhabdus bombi,species,Larkinella bombi +Tellurirhabdus rosea,species,Larkinella roseola +Tellurirhabdus,genus,Larkinella +Tepidimonas alkaliphilus,species,Tepidimonas alkaliphila +Terribacillus goriensis,species,Terribacillus saccharophilus +Terrihabitans deserti,species,Flaviflagellibacter deserti +Terrirhizobium terrae,species,Aliirhizobium terrae +Terrirhizobium,genus,Aliirhizobium +Tetrasphaera australiensis,species,Nostocoides australiense +Tetrasphaera duodecadis,species,Phycicoccus duodecadis +Tetrasphaera elongata,species,Phycicoccus elongatus +Tetrasphaera japonica,species,Nostocoides japonicum +Tetrasphaera jenkinsii,species,Nostocoides jenkinsii +Tetrasphaera remsis,species,Knoellia remsis +Tetrasphaera vanveenii,species,Nostocoides vanveenii +Tetrasphaera veronensis,species,Nostocoides veronense +Tetrasphaera,genus,Nostocoides +Tetrathiobacter kashmirensis,species,Advenella kashmirensis +Tetrathiobacter mimigardefordensis,species,Advenella mimigardefordensis +Tetrathiobacter,genus,Advenella +Thalassiella azotovora,species,Thalassiella azotivora +Thalassobacter arenae,species,Litoreibacter arenae +Thalassobacter stenotrophicus,species,Jannaschia cystaugens +Thalassobacter,genus,Jannaschia +Thalassobius abyssi,species,Shimia abyssi +Thalassobius activus,species,Cognatishimia activa +Thalassobius aestuarii,species,Shimia aestuarii +Thalassobius aquaeponti,species,Shimia aquaeponti +Thalassobius gelatinovorus,species,Ruegeria gelatinovorans +Thalassobius litoralis,species,Lutimaribacter litoralis +Thalassobius maritimus,species,Cognatishimia maritima +Thalassobius taeanensis,species,Litorimicrobium taeanense +Thalassobius vesicularis,species,Youngimonas vesicularis +Thalassolituus hydrocarbonoclasticus,species,Thalassolituus hydrocarboniclasticus +Thalassomonas agariperforans,species,Thalassotalea agariperforans +Thalassomonas agarivorans,species,Thalassotalea agarivorans +Thalassomonas eurytherma,species,Thalassotalea eurytherma +Thalassomonas fusca,species,Thalassotalea fusca +Thalassomonas ganghwensis,species,Thalassotalea ganghwensis +Thalassomonas loyana,species,Thalassotalea loyana +Thalassovita abyssi,species,Shimia abyssi +Thalassovita activa,species,Cognatishimia activa +Thalassovita aestuarii,species,Shimia aestuarii +Thalassovita aquaeponti,species,Shimia aquaeponti +Thalassovita aquimarina,species,Thalassobius aquimarinus +Thalassovita autumnalis,species,Thalassobius autumnalis +Thalassovita gelatinovora,species,Ruegeria gelatinovorans +Thalassovita litoralis,species,Lutimaribacter litoralis +Thalassovita litoraria,species,Thalassobius litorarius +Thalassovita mangrovi,species,Thalassobius mangrovi +Thalassovita maritima,species,Cognatishimia maritima +Thalassovita mediterranea,species,Thalassobius mediterraneus +Thalassovita taeanensis,species,Litorimicrobium taeanense +Thalassovita,genus,Ruegeria +Thauera hydrothermalis,species,Pseudothauera hydrothermalis +Thauera lacus,species,Pseudothauera lacus +Thermoactinomyces candidus,species,Thermoactinomyces vulgaris +Thermoactinomyces dichotomica,species,Thermoflavimicrobium dichotomicum +Thermoactinomyces dichotomicus,species,Thermoflavimicrobium dichotomicum +Thermoactinomyces guangxiensis,species,Paenactinomyces guangxiensis +Thermoactinomyces peptonophilus,species,Seinonella peptonophila +Thermoactinomyces putidus,species,Laceyella putida +Thermoactinomyces sacchari,species,Laceyella sacchari +Thermoactinomyces thalpophilus,species,Laceyella sacchari +Thermoanaerobacter finnii,species,Thermoanaerobacter brockii subsp. finnii +Thermoanaerobacter subterraneus,species,Caldanaerobacter subterraneus +Thermoanaerobacter tengcongensis,species,Caldanaerobacter subterraneus subsp. tengcongensis +Thermoanaerobacter thermohydrosulfuricus,species,Thermoanaerobacter ethanolicus subsp. thermohydrosulfuricus +Thermoanaerobacter yonseiensis,species,Caldanaerobacter subterraneus subsp. yonseiensis +Thermoanaerobacterium polysaccharolyticum,species,Caldanaerobius polysaccharolyticus +Thermoanaerobacterium thermostercus,species,Thermoanaerobacterium thermostercoris +Thermoanaerobacterium zeae,species,Caldanaerobius zeae +Thermoanaerobium acetigenum,species,Caldicellulosiruptor acetigenus +Thermoanaerobium brockii,species,Thermoanaerobacter brockii +Thermoanaerobium,genus,Thermoanaerobacter +Thermoanaerosceptrum fracticalcis,species,Thermanaerosceptrum fracticalcis +Thermoanaerosceptrum,genus,Thermanaerosceptrum +Thermobacterium salinum,species,Luteirhabdus salina +Thermobacterium,genus,Luteirhabdus +Thermobacteroides acetoethylicus,species,Thermoanaerobacter acetoethylicus +Thermobacteroides leptospartum,species,Thermoclostridium stercorarium subsp. leptospartum +Thermobacteroides proteolyticus,species,Coprothermobacter proteolyticus +Thermobacteroides,genus,Thermoanaerobacter +Thermobifida cellulolytica,species,Thermobifida cellulosilytica +Thermococcoides shengliensis,species,Kosmotoga shengliensis +Thermococcoides,genus,Kosmotoga +Thermococcus aegaeicus,species,Thermococcus aegaeus +Thermococcus kodakaraensis,species,Thermococcus kodakarensis +Thermodesulfobacterium mobile,species,Thermodesulfobacterium thermophilum +Thermodesulforhabdus norvegicus,species,Thermodesulforhabdus norvegica +Thermofilum uzonense,species,Infirmifilum uzonense +Thermohalobaculum sediminis,species,Limibaculum sediminis +Thermolithobacter carboxidivorans,species,Thermolithobacter carboxydivorans +Thermomarinilinea lacunofontalis,species,Thermomarinilinea lacunifontana +Thermomonospora alba,species,Thermobifida alba +Thermomonospora chromogena,species,Thermostaphylospora chromogena +Thermomonospora formosensis,species,Actinomadura formosensis +Thermomonospora fusca,species,Thermobifida fusca +Thermomonospora mesophila,species,Sphaerimonospora mesophila +Thermomonospora mesouviformis,species,Thermobifida alba +Thermoplasma acidophila,species,Thermoplasma acidophilum +Thermoproteus neutrophilus,species,Pyrobaculum neutrophilum +Thermoterrabacterium ferrireducens,species,Carboxydothermus ferrireducens +Thermoterrabacterium,genus,Carboxydothermus +Thermothrix thioparus,species,Thermothrix thiopara +Thermotoga caldifontis,species,Pseudothermotoga caldifontis +Thermotoga elfii,species,Pseudothermotoga elfii +Thermotoga hypogea,species,Pseudothermotoga hypogea +Thermotoga lettingae,species,Pseudothermotoga lettingae +Thermotoga naphthophila,species,Thermotoga petrophila +Thermotoga subterranea,species,Pseudothermotoga subterranea +Thermotoga thermarum,species,Pseudothermotoga thermarum +Thermovum composti,species,Chelativorans composti +Thermovum,genus,Chelativorans +Thermus chliarophilus,species,Calidithermus chliarophilus +Thermus profundus,species,Thermococcus profundus +Thermus ruber,species,Meiothermus ruber +Thermus silvanus,species,Allomeiothermus silvanus +Thialkalicoccus limnaeus,species,Thioalkalicoccus limnaeus +Thialkalicoccus,genus,Thioalkalicoccus +Thialkalimicrobium aerophilum,species,Thiomicrospira aerophila +Thialkalimicrobium cyclicum,species,Thiomicrospira cyclica +Thialkalimicrobium sibiricum,species,Thiomicrospira sibirica +Thialkalimicrobium,genus,Thiomicrospira +Thialkalivibrio denitrificans,species,Thioalkalivibrio denitrificans +Thialkalivibrio halophilus,species,Thioalkalivibrio halophilus +Thialkalivibrio jannaschii,species,Thioalkalivibrio jannaschii +Thialkalivibrio nitratireducens,species,Thioalkalivibrio nitratireducens +Thialkalivibrio nitratis,species,Thioalkalivibrio nitratis +Thialkalivibrio paradoxus,species,Thioalkalivibrio paradoxus +Thialkalivibrio thiocyanodenitrificans,species,Thioalkalivibrio thiocyanodenitrificans +Thialkalivibrio thiocyanoxidans,species,Thioalkalivibrio thiocyanoxidans +Thialkalivibrio versutus,species,Thioalkalivibrio versutus +Thialkalivibrio,genus,Thioalkalivibrio +Thioalkalimicrobium aerophilum,species,Thiomicrospira aerophila +Thioalkalimicrobium cyclicum,species,Thiomicrospira cyclica +Thioalkalimicrobium microaerophilum,species,Thiomicrospira microaerophila +Thioalkalimicrobium sibericum,species,Thiomicrospira sibirica +Thioalkalimicrobium sibiricum,species,Thiomicrospira sibirica +Thioalkalimicrobium,genus,Thiomicrospira +Thiobacillus acidophilus,species,Acidiphilium acidophilum +Thiobacillus albertis,species,Acidithiobacillus albertensis +Thiobacillus aquaesulis,species,Annwoodia aquaesulis +Thiobacillus caldus,species,Acidithiobacillus caldus +Thiobacillus concretivorus,species,Acidithiobacillus thiooxidans +Thiobacillus delicatus,species,Thiomonas delicata +Thiobacillus ferrooxidans,species,Acidithiobacillus ferrooxidans +Thiobacillus halophilus,species,Guyparkeria halophila +Thiobacillus hydrothermalis,species,Guyparkeria hydrothermalis +Thiobacillus intermedius,species,Thiomonas intermedia +Thiobacillus neapolitanus,species,Halothiobacillus neapolitanus +Thiobacillus novellus,species,Ancylobacter novellus +Thiobacillus perometabolis,species,Thiomonas perometabolis +Thiobacillus rapidicrescens,species,Paracoccus versutus +Thiobacillus tepidarius,species,Thermithiobacillus tepidarius +Thiobacillus thermosulfatus,species,Thiomonas thermosulfata +Thiobacillus thiooxidans,species,Acidithiobacillus thiooxidans +Thiobacillus thyasiris,species,Thiomicrospira thyasirae +Thiobacillus versutus,species,Paracoccus versutus +Thiobacimonas profunda,species,Salipiger profundus +Thiobacimonas,genus,Salipiger +Thiobacterium bovistum,species,Thiobacterium bovista +Thiocapsa halophila,species,Thiohalocapsa halophila +Thiocapsa pfennigii,species,Thiococcus pfennigii +Thioclava arenosa,species,Pseudothioclava arenosa +Thioclava electrotropha,species,Thioclava sediminum +Thioclava marinus,species,Thioclava marina +Thiofractor thiocaminus,species,Thiofractor thiocamini +Thiohalophilus thiocyanoxidans,species,Thiohalophilus thiocyanatoxydans +Thiomicrospira arctica,species,Thiomicrorhabdus arctica +Thiomicrospira chilensis,species,Thiomicrorhabdus chilensis +Thiomicrospira crunogena,species,Hydrogenovibrio crunogenus +Thiomicrospira denitrificans,species,Sulfurimonas denitrificans +Thiomicrospira frisia,species,Thiomicrorhabdus frisia +Thiomicrospira halophila,species,Hydrogenovibrio halophilus +Thiomicrospira hydrogeniphila,species,Thiomicrorhabdus hydrogeniphila +Thiomicrospira kuenenii,species,Hydrogenovibrio kuenenii +Thiomicrospira psychrophila,species,Thiomicrorhabdus psychrophila +Thiomicrospira 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fischeri,species,Aliivibrio fischeri +Vibrio hemicentroti,species,Vibrio splendidus +Vibrio hollisae,species,Grimontia hollisae +Vibrio iliopiscarius,species,Photobacterium iliopiscarium +Vibrio inhibens,species,Vibrio jasicida +Vibrio injenensis,species,Vibrio injensis +Vibrio logei,species,Aliivibrio logei +Vibrio marinus,species,Moritella marina +Vibrio pelagius,species,Listonella pelagia +Vibrio salmonicida,species,Aliivibrio salmonicida +Vibrio shiloi,species,Vibrio mediterranei +Vibrio shilonii,species,Vibrio mediterranei +Vibrio succinogenes,species,Wolinella succinogenes +Vibrio trachuri,species,Vibrio harveyi +Vibrio viscosus,species,Moritella viscosa +Vibrio wodanis,species,Aliivibrio wodanis +Vibrionimonas magnilacihabitans,species,Sediminibacterium magnilacihabitans +Vibrionimonas,genus,Sediminibacterium +Virgibacillus albus,species,Aquibacillus albus +Virgibacillus campisalis,species,Virgibacillus alimentarius +Virgibacillus kapii,species,Virgibacillus salexigens 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galactanovorans,species,Zobellia galactanivorans +Zongyanglinia huanghaiensis,species,Parasedimentitalea huanghaiensis +Zongyanglinia marina,species,Parasedimentitalea maritima +Zongyanglinia marinus,species,Parasedimentitalea maritima +Zongyanglinia,genus,Parasedimentitalea +Zooshikella marina,species,Zooshikella ganghwensis +Zuelzera stenostrepta,species,Treponema stenostreptum +Zuelzera,genus,Treponema +Zymomonas mobile,species,Zymomonas mobilis +Zymophilus paucivorans,species,Propionispira paucivorans +Zymophilus raffinosivorans,species,Propionispira raffinosivorans +Zymophilus,genus,Propionispira diff --git a/data-raw/ncbi_synonyms.csv b/data-raw/ncbi_synonyms.csv new file mode 100644 index 0000000..62ac785 --- /dev/null +++ b/data-raw/ncbi_synonyms.csv @@ -0,0 +1,827 @@ +name,rank,correct_name +Myxobacteria,order,Myxococcales +The Myxobacteria,order,Myxococcales +Cystobacteraceae,family,Archangiaceae +rhizobacteria,order,Hyphomicrobiales +Rhizobiales,order,Hyphomicrobiales +Methylomonadaceae Leadbetter 1974,family,Methylococcaceae +type I methanotrophs,family,Methylococcaceae +Acetobacteraceae (ex Henrici 1939) Gillis and De Ley 1980,family,Acetobacteraceae +Acinetobacteraceae,family,Moraxellaceae +Branhamaceae,family,Moraxellaceae +Simonsiellaceae,family,Neisseriaceae +Enterobacteraceae,family,Enterobacteriaceae +Bartonella group,family,Bartonellaceae +Dichelobacter group,family,Cardiobacteriaceae +Haloanaerobiaceae,family,Halanaerobiaceae +Bacteroidetes,phylum,Bacteroidota +Bacteroidota Whitman et al. 2018,phylum,Bacteroidota +Sphingobacteria,phylum,Bacteroidota +Chlorobaeota,phylum,Chlorobiota +Chlorobiota corrig. Iino et al. 2021,phylum,Chlorobiota +Chlorobi,phylum,Chlorobiota +Cyanobacteria,phylum,Cyanobacteriota +Cyanophycota,phylum,Cyanobacteriota +Cyanophyta,phylum,Cyanobacteriota +Oxygenic photosynthetic bacteria,phylum,Cyanobacteriota +Oxyphotobacteria,phylum,Cyanobacteriota +"Chroococcales corrig. Ardissone, 1886",order,Chroococcales +Chroococcoideae,order,Chroococcales +Prochlorales,family,Prochloraceae +Alphaproteobacteriota,phylum,Pseudomonadota +Alphaproteobacteriota Whitman et al. 2018,phylum,Pseudomonadota +Proteobacteria,phylum,Pseudomonadota +Proteobacteriota,phylum,Pseudomonadota +gamma proteobacteria,class,Gammaproteobacteria +gamma subdivision,class,Gammaproteobacteria +gamma subgroup,class,Gammaproteobacteria +Proteobacteria gamma subdivision,class,Gammaproteobacteria +Pseudomonadia,class,Gammaproteobacteria +"Purple bacteria, gamma subdivision",class,Gammaproteobacteria +Bacillaeota,phylum,Bacillota +Bacillota corrig. Gibbons and Murray 2021,phylum,Bacillota +Bacillus/Clostridium group,phylum,Bacillota +clostridial firmicutes,phylum,Bacillota +Clostridium group firmicutes,phylum,Bacillota +Low G+C firmicutes,phylum,Bacillota +Yaniaceae,family,Micrococcaceae +Yaniellaceae,family,Micrococcaceae +Deinococcaeota,phylum,Deinococcota +Deinococcus-Thermus,phylum,Deinococcota +Bacillus/Staphylococcus group,order,Bacillales +Caryophanales,order,Bacillales +Actinobacteria Stackebrandt et al. 1997,class,Actinomycetes +Actinomycetia,class,Actinomycetes +Thermomonospora group,family,Thermomonosporaceae +Actinosynnemataceae,family,Pseudonocardiaceae +Borrelomycetales,order,Mycoplasmatales +Mollicutales,order,Mycoplasmatales +Mycoplasmas,order,Mycoplasmatales +Paramycetales,order,Mycoplasmatales +Pleuropneumoniales,order,Mycoplasmatales +Borrelomycetaceae,family,Mycoplasmataceae +Parasitaceae,family,Mycoplasmataceae +Pleuropneumoniaceae,family,Mycoplasmataceae +Sapromycetaceae,family,Acholeplasmataceae +Saprophytaceae,family,Acholeplasmataceae +Haloarchaeales,order,Halobacteriales +Haloferacales,order,Halobacteriales +Natrialbales,order,Halobacteriales +Haloarchaeaceae,family,Halobacteriaceae +Pyrodictiales,family,Pyrodictiaceae +Actinocatenisporaceae Salam et al. 2020,family,Micromonosporaceae +Alphabacteria,class,Alphaproteobacteria +alpha proteobacteria,class,Alphaproteobacteria +alpha subdivision,class,Alphaproteobacteria +alpha subgroup,class,Alphaproteobacteria +Proteobacteria alpha subdivision,class,Alphaproteobacteria +"Purple bacteria, alpha subdivision",class,Alphaproteobacteria +beta proteobacteria,class,Betaproteobacteria +beta subdivision,class,Betaproteobacteria +beta subgroup,class,Betaproteobacteria +Proteobacteria beta subdivision,class,Betaproteobacteria +"Purple bacteria, beta subdivision",class,Betaproteobacteria +Deltabacteria Cavalier-Smith 1992,class,Deltaproteobacteria +Deltabacteria Cavalier-Smith 2002,class,Deltaproteobacteria +delta proteobacteria,class,Deltaproteobacteria +delta subdivision,class,Deltaproteobacteria +delta subgroup,class,Deltaproteobacteria +Proteobacteria delta subdivision,class,Deltaproteobacteria +"Purple bacteria, delta subdivision",class,Deltaproteobacteria +Candidatus Korarchaeota,phylum,Thermoproteota +Candidatus Methanomethylicota,phylum,Thermoproteota +Candidatus Verstraetearchaeota Vanwonterghem et al. 2016,phylum,Thermoproteota +Crenarchaeota,phylum,Thermoproteota +Eocyta,phylum,Thermoproteota +Thermoproteaeota,phylum,Thermoproteota +Thermoproteota corrig. Garrity and Holt 2021,phylum,Thermoproteota +Xenarchaea,phylum,Thermoproteota +Xenarchaeota,phylum,Thermoproteota +Euryarchaeota,phylum,Methanobacteriota +Methanobacteraeota,phylum,Methanobacteriota +Epsilonbacteraeota,phylum,Campylobacterota +epsilon proteobacteria,phylum,Campylobacterota +epsilon subdivision,phylum,Campylobacterota +epsilon subgroup,phylum,Campylobacterota +Proteobacteria epsilon subdivision,phylum,Campylobacterota +"Purple bacteria, epsilon subdivision",phylum,Campylobacterota +archaeal group 1,order,Nitrosopumilales +Archaeobacterium group 1,order,Nitrosopumilales +marine archaeal group 1,order,Nitrosopumilales +marine group1 Crenarchaeota,order,Nitrosopumilales +marine group1 Thaumarchaeota,order,Nitrosopumilales +Propionibacterium group,family,Propionibacteriaceae +Mollicutes Edward and Freundt 1967 (Approved Lists 1980),class,Mollicutes +Mycoplasmas and walled relatives,class,Mollicutes +Paramycetes,class,Mollicutes +cluster IX,family,Veillonellaceae +Megasphaera group,family,Veillonellaceae +Heliobacterium group,family,Heliobacteriaceae +photosynthesizing firmicutes,family,Heliobacteriaceae +Photosynthesizing gram-positive bacteria,family,Heliobacteriaceae +alpha-3 proteobacteria,family,Paracoccaceae +Rhodobacteraceae Garrity et al. 2006,family,Paracoccaceae +Rhodobacteraceae,family,Paracoccaceae +Rhodobacter clade,family,Paracoccaceae +alpha methylotroph group 1,family,Methylocystaceae +alpha subdivision methylotroph group 1,family,Methylocystaceae +alpha subdivision methylotrophs,family,Methylocystaceae +type II methanotrophs,family,Methylocystaceae +Ammonia oxidizing bacteria,order,Nitrosomonadales +Ammonia-oxidizing bacteria,order,Nitrosomonadales +beta subdivision methylotrophs,family,Methylophilaceae +beta-subdivision methylotrophs,family,Methylophilaceae +Methylophilus group,family,Methylophilaceae +Myxococcia Cavalier-Smith 2020,class,Myxococcia +Xanthomonadaceae Saddler and Bradbury 2005,family,Lysobacteraceae +Xanthomonadaceae,family,Lysobacteraceae +Chloroflexi,class,Chloroflexia +Chloroflexaceae group,order,Chloroflexales +Chloroflexus group,order,Chloroflexales +Fusobacteraeota,phylum,Fusobacteriota +Fusobacteria,phylum,Fusobacteriota +Fusobacteriota corrig. Garrity and Holt 2021,phylum,Fusobacteriota +Hydrogenic oxygen reducing bacteria,order,Aquificales +Obligately chemolithotrophic hydrogen bacteria,order,Aquificales +Oxygen reducing bacteria,order,Aquificales +Oxygen-reducing bacteria,order,Aquificales +Entomoplasma group,family,Entomoplasmataceae +Leuconostocaceae,family,Lactobacillaceae +Francisella group,family,Francisellaceae +Blattabacterium and related endosymbionts,family,Blattabacteriaceae +Blattabacterium group,family,Blattabacteriaceae +Nitrospiraeota,phylum,Nitrospirota +Nitrospirae,phylum,Nitrospirota +Nitrospira group,phylum,Nitrospirota +Nitrospirota corrig. Garrity and Holt 2021,phylum,Nitrospirota +Thermodesulfovibrio group,phylum,Nitrospirota +BANA domain,family,Nitrobacteraceae +Bradyrhizobiaceae Garrity et al. 2006,family,Nitrobacteraceae +Bradyrhizobiaceae,family,Nitrobacteraceae +Bradyrhizobium group,family,Nitrobacteraceae +Candidatus Hepatobacteraceae,family,Holosporaceae +Holosporaceae Gortz and Schmidt 2006,family,Holosporaceae +Ancylobacter group,family,Hyphomicrobiaceae +Hyphomicrobium group,family,Hyphomicrobiaceae +Beijerinckia group,family,Beijerinckiaceae +Verrucosimicrobiales,order,Verrucomicrobiales +Cyanobacteria Subsection II,order,Pleurocapsales +Haloanaerobiales,order,Halanaerobiales +Acidobacteria,phylum,Acidobacteriota +Acidobacteriota corrig. Thrash and Coates 2021,phylum,Acidobacteriota +Acidobacterium group,phylum,Acidobacteriota +Candidatus Marinimicrobia Rinke et al. 2013,phylum,Fidelibacterota +Candidatus Marinisomatota Royalty and Steen 2019,phylum,Fidelibacterota +Candidatus Neomarinimicrobiota,phylum,Fidelibacterota +Fibrobacteraeota,phylum,Fibrobacterota +Fibrobacteres,phylum,Fibrobacterota +Fibrobacteres Garrity and Holt 2012,phylum,Fibrobacterota +Fibrobacter group,phylum,Fibrobacterota +Fibrobacterota corrig. Garrity and Holt 2021,phylum,Fibrobacterota +Candidatus Acetithermota corrig. Rinke et al. 2013,phylum,Candidatus Bipolaricaulota +Candidatus Acetithermota,phylum,Candidatus Bipolaricaulota +Candidatus Acetothermia,phylum,Candidatus Bipolaricaulota +candidate division Obsidian Pool 3,phylum,Candidatus Omnitrophota +candidate division OP3,phylum,Candidatus Omnitrophota +Candidatus Omnitrophicaeota,phylum,Candidatus Omnitrophota +Candidatus Omnitrophica Rinke et al. 2013,phylum,Candidatus Omnitrophota +Caldisericaeota,phylum,Caldisericota +Caldisericota corrig. Mori et al. 2021,phylum,Caldisericota +candidate division OP8,phylum,Candidatus Aminicenantota +Candidatus Aminicenantes Rinke et al. 2013,phylum,Candidatus Aminicenantota +Candidatus Atribacteria Dodsworth et al. 2013,phylum,Atribacterota +Armatimonadaeota,phylum,Armatimonadota +Armatimonadota corrig. Tamaki et al. 2021,phylum,Armatimonadota +candidate division Obsidian Pool 10,phylum,Armatimonadota +candidate division OP10,phylum,Armatimonadota +candidate phylum OP10,phylum,Armatimonadota +domain cluster OP10,phylum,Armatimonadota +Candidatus Microgenomates Rinke et al. 2013,phylum,Candidatus Microgenomatota +Candidatus Microgenomatota corrig. Rinke et al. 2013,phylum,Candidatus Microgenomatota +cluster V,order,Thermoanaerobacterales +Thermoanaerobacter group,order,Thermoanaerobacterales +Dictyoglomaeota,phylum,Dictyoglomota +Dictyoglomi,phylum,Dictyoglomota +Dictyoglomota corrig. Patel 2021,phylum,Dictyoglomota +cluster VIII,family,Syntrophomonadaceae +Syntrophomonadaceae Zhao et al. 1993,family,Syntrophomonadaceae +Syntrophomonas group,family,Syntrophomonadaceae +Flexistipes group,class,Deferribacteres +Mesorhizobium/Phyllobacterium group,family,Phyllobacteriaceae +Phyllobacteriaceae Mergaert and Swings 2006,family,Phyllobacteriaceae +Desulfuromonales,order,Desulfuromonadales +Desulfuromonas group,order,Desulfuromonadales +Thiomicrospira group,order,Thiotrichales +Thiothrix/Francisella group,order,Thiotrichales +Pseudomonaceae/Moraxellaceae group,order,Pseudomonadales +Alteromonas group,family,Alteromonadaceae +Colwellia group,family,Alteromonadaceae +Ectothiorhodospira group,family,Ectothiorhodospiraceae +Campylobacter group,family,Campylobacteraceae +candidate division WS3,phylum,Candidatus Latescibacterota +candidate division Wurtsmith 3,phylum,Candidatus Latescibacterota +Candidatus Latescibacteria Rinke et al. 2013,phylum,Candidatus Latescibacterota +Elusimicrobaeota,phylum,Elusimicrobiota +Elusimicrobiota corrig. Geissinger et al. 2021,phylum,Elusimicrobiota +Verrucomicrobaeota,phylum,Verrucomicrobiota +Verrucomicrobia,phylum,Verrucomicrobiota +Verrucomicrobiota corrig. Hedlund 2021,phylum,Verrucomicrobiota +Oxalobacter group,family,Oxalobacteraceae +beta-2 subgroup,family,Rhodocyclaceae +Rhodocyclus group,family,Rhodocyclaceae +Burkholderia/Oxalobacter/Ralstonia group,order,Burkholderiales +beta-1 subgroup,family,Comamonadaceae +Nocardiopsaceae,family,Nocardiopsidaceae +Nocardiopsidaceae corrig.,family,Nocardiopsidaceae +Kineococcus group,family,Kineosporiaceae +Kinerosporia group,family,Kineosporiaceae +Aeromonas group,family,Aeromonadaceae +Coriobacteridae,class,Coriobacteriia +Sphaerobacteridae,order,Sphaerobacterales +Micrococcineae,order,Micrococcales +Corynebacteriales Goodfellow and Jones 2015,order,Mycobacteriales +Corynebacteriales,order,Mycobacteriales +Corynebacteriineae corrig. Stackebrandt et al. 1997,order,Mycobacteriales +Corynebacteriineae,order,Mycobacteriales +Corynebacterineae,order,Mycobacteriales +Mycobacteriales Janke 1924 (Approved Lists 1980),order,Mycobacteriales +Mycobacteriineae,order,Mycobacteriales +Micromonosporineae,order,Micromonosporales +Propionibacterineae,order,Propionibacteriales +Pseudonocardineae,order,Pseudonocardiales +Streptomycetales,order,Kitasatosporales +Streptomycetes,order,Kitasatosporales +Streptomycineae Rainey et al. 1997,order,Kitasatosporales +Streptomycineae,order,Kitasatosporales +Streptosporangineae,order,Streptosporangiales +Frankineae,order,Frankiales +Glycomycineae,order,Glycomycetales +Nocardioides group,family,Nocardioidaceae +Williamsiaceae,family,Nocardiaceae +Microsphaeraceae,family,Nakamurellaceae +Cytophaga-Flexibacter group,family,Cytophagaceae +Saprospira group,family,Saprospiraceae +Rhodothermus group,family,Crenotrichaceae +Ferroplasma group,family,Ferroplasmaceae +Gallionella group,family,Gallionellaceae +Staphylococcaceae Schleifer and Bell 2010,family,Staphylococcaceae +Bacillus/Lactobacillus/Streptococcus group,class,Bacilli +Firmibacteria,class,Bacilli +Enterobacteriaceae and related endosymbionts,order,Enterobacterales +Enterobacteriaceae group,order,Enterobacterales +Enterobacteriales,order,Enterobacterales +Candidatus Saccharibacteria Albertsen et al. 2013,phylum,Candidatus Saccharimonadota +Igneococcales,order,Desulfurococcales +Desulfurella group,family,Desulfurellaceae +Chrysiogenes group,class,Chrysiogenia +Chrysiogenetes Garrity and Holt 2002,class,Chrysiogenia +Chrysiogenia corrig.,class,Chrysiogenia +Coxiella group,family,Coxiellaceae +Legionellaceae group,order,Legionellales +Rhodobium group,family,Rhodobiaceae +Methylobacteriaceae Garrity et al. 2006,family,Methylobacteriaceae +Methylobacterium group,family,Methylobacteriaceae +Burkholderia group,family,Burkholderiaceae +Spirillum group,family,Spirillaceae +Hydrogenophilus group,order,Hydrogenophilales +Microchaetaceae,family,Tolypothrichaceae +Beutenbergia group,family,Beutenbergiaceae +Verrucomicrobia subdivision 2,class,Spartobacteria +Xiphinematobacteriaceae,class,Spartobacteria +Verrucomicrobia subdivision 3,order,Limisphaerales +Kiritimatiellota corrig. Spring et al. 2021,phylum,Kiritimatiellota +subdivision 6,family,Verrucomicrobia subdivision 6 +Chromatiaceae/Ectothiorhodospiraceae group,order,Chromatiales +Xanthomonadales Saddler and Bradbury 2005,order,Lysobacterales +Xanthomonadales,order,Lysobacterales +Cardiobacteriaceae group,order,Cardiobacteriales +Piscirickettsia group,family,Piscirickettsiaceae +Thiothrix group,family,Thiotrichaceae +Methylococcaceae group,order,Methylococcales +Oceanospirillum/Halomonas group,order,Oceanospirillales +Alteromonadaceae group,order,Alteromonadales +Vibrionaceae group,order,Vibrionales +'Vibrionales',order,Vibrionales +Aeromonadaceae/Succinivibrionaceae group,order,Aeromonadales +Pasteruellaceae group,order,Pasteurellales +candidate division BD,phylum,Gemmatimonadota +Gemmatimonadaeota,phylum,Gemmatimonadota +Gemmatimonadetes,phylum,Gemmatimonadota +Gemmatimonadota corrig. Zhang et al. 2021,phylum,Gemmatimonadota +Candidatus Hydrogenedentes Rinke et al. 2013,phylum,Candidatus Hydrogenedentota +Methanosaetaceae,family,Methanotrichaceae +SA1 group,class,Methanonatronarchaeia +Porphyromonadaceae Krieg 2012,family,Porphyromonadaceae +Crenarchaeota,class,Thermoprotei +Thermoprotea,class,Thermoprotei +Archaeobacteria,class,Methanobacteria +Methanothermea,class,Methanococci +Halobacteria Grant et al. 2002,class,Halobacteria +Protoarchaea,class,Thermococci +Archaeoglobea,class,Archaeoglobi +Clostridiales,order,Eubacteriales +Clostridium cluster XI,family,Peptostreptococcaceae +Planococcaceae,family,Caryophanaceae +Listeriaceae Ludwig et al. 2010,family,Listeriaceae +Alicyclobacillus group,family,Alicyclobacillaceae +Low G+C gram-positive sulfur-oxidizing group,family,Alicyclobacillaceae +Aquificae,class,Aquificia +Aquificae Reysenbach 2002,class,Aquificia +Aquificia corrig.,class,Aquificia +Thermotogae Reysenbach 2002,class,Thermotogae +Thermotogia,class,Thermotogae +"Togobacteria Cavalier-Smith, 2002",class,Thermotogae +Hadobacteria,class,Deinococci +Thermomicrobia Garrity and Holt 2002,class,Thermomicrobia +Chlorobea,class,Chlorobiia +Chlorobia (ex Garrity and Holt 2001) Bello et al. 2022,class,Chlorobiia +Chlorobiaceae Copeland 1956,family,Chlorobiaceae +Nanoarchaeota,phylum,Nanobdellota +Bacteroidetes,class,Bacteroidia +Aquificae,phylum,Aquificota +Aquificaeota,phylum,Aquificota +Aquificota corrig. Reysenbach 2021,phylum,Aquificota +Chloroflexaeota,phylum,Chloroflexota +Chloroflexi Garrity and Holt 2001,phylum,Chloroflexota +Chloroflexota corrig. Garrity and Holt 2021,phylum,Chloroflexota +Thermotogaeota,phylum,Thermotogota +Thermotogota corrig. Reysenbach 2021,phylum,Thermotogota +Deferribacteraeota,phylum,Deferribacterota +Deferribacterota corrig. Garrity and Holt 2021,phylum,Deferribacterota +Chrysiogenaeota,phylum,Chrysiogenota +Chrysiogenetota,phylum,Chrysiogenota +Chrysiogenota corrig. Garrity and Holt 2021,phylum,Chrysiogenota +Desulfobacterota,phylum,Thermodesulfobacteriota +Thermodesulfobacteraeota,phylum,Thermodesulfobacteriota +Thermodesulfobacteriota corrig. Garrity and Holt 2021,phylum,Thermodesulfobacteriota +Actinobacteraeota,phylum,Actinomycetota +Actinobacteria,phylum,Actinomycetota +Actinobacteriota,phylum,Actinomycetota +Fusobacteria,class,Fusobacteriia +Verrucomicrobiae Hedlund et al. 1998,class,Verrucomicrobiia +Verrucomicrobiae,class,Verrucomicrobiia +Verrucomicrobiia corrig.,class,Verrucomicrobiia +Verrucomicrobia subdivision 1,family,Verrucomicrobiaceae +Verrucosimicrobiaceae,family,Verrucomicrobiaceae +Planctobacteria (Cavalier-Smith 1987) Cavalier-Smith 2002,phylum,Planctomycetota +Planctobacteria,phylum,Planctomycetota +Planctomycetes Garrity and Holt 2001,phylum,Planctomycetota +Planctomycetota Whitman et al. 2018,phylum,Planctomycetota +Planctomycea,class,Planctomycetia +Planctomycetacia,class,Planctomycetia +Planctomycetes,class,Planctomycetia +Planctomycetia Ward 2020,class,Planctomycetia +Spirochaetaeota,phylum,Spirochaetota +Spirochaetae,phylum,Spirochaetota +Spirochaetes,phylum,Spirochaetota +Spirochaetes,class,Spirochaetia +Nitrospira,class,Nitrospiria +Chlamydaeota,phylum,Chlamydiota +Chlamydiae,phylum,Chlamydiota +Chlamydiota corrig. Garrity and Holt 2021,phylum,Chlamydiota +Chlamydiia (Horn 2011) emend. Gupta et al. 2016,class,Chlamydiia +Chlamydiia Horn 2016,class,Chlamydiia +Fibrobacteres,class,Fibrobacteria +Acidobacteriae,class,Terriglobia +Acidobacteriia corrig. (Cavalier-Smith 2002) Thrash and Coates 2011,class,Terriglobia +Acidobacteriia,class,Terriglobia +Solibacteres,class,Terriglobia +Acidobacteriales,order,Terriglobales +Kiloniellales,order,Rhodospirillales +Caulobacter group,order,Caulobacterales +'Desulfoarculaceae',family,Desulfoarculaceae +Desulfuromonaceae,family,Desulfuromonadaceae +Desulfuromonadaceae corrig. Kuever et al. 2006,family,Desulfuromonadaceae +Pseudopelobacteraceae,family,Desulfuromonadaceae +Bdellovibrionales Garrity et al. 2006,order,Bdellovibrionales +Bdellovibrionaceae Garrity et al. 2006,family,Pseudobdellovibrionaceae +Bdellovibrionaceae,family,Pseudobdellovibrionaceae +Hungateiclostridiaceae,family,Oscillospiraceae +Ruminococcaceae,family,Oscillospiraceae +Gemmatimonadetes,class,Gemmatimonadia +Gemmatimonadia corrig.,class,Gemmatimonadia +Candidatus Absconditabacteria Hug et al. 2016,phylum,Candidatus Absconditibacteriota +Alcanivoraceae,family,Alcanivoracaceae +Alcanivoraxaceae,family,Alcanivoracaceae +Desulfonatronumaceae,family,Desulfonatronaceae +Haliangiaceae,family,Kofleriaceae +Candidatus Procabacteriales Garrity et al. 2003,order,Candidatus Procaibacterales +Candidatus Procabacteriaceae Garrity et al. 2003,family,Candidatus Procaibacteraceae +Thermodesulfobiaceae Mori et al. 2004,family,Thermodesulfobiaceae +'Parvularculaceae',family,Parvularculaceae +Lentisphaeraeota,phylum,Lentisphaerota +Lentisphaerae,phylum,Lentisphaerota +Lentisphaerota corrig. Cho et al. 2021,phylum,Lentisphaerota +Peredibacteraceae,family,Bacteriovoracaceae +Lentisphaerae subgroup L5,order,Lentisphaerales +Lentisphaerae subgroup L1,order,Victivallales +Hydrogenimonaceae Garrity et al. 2004,family,Hydrogenimonadaceae +Hydrogenimonadaceae Waite et al. 2020,family,Hydrogenimonadaceae +candidate division Termite Group 3,class,Chitinivibrionia +candidate division TG3,class,Chitinivibrionia +Dehalococcoidetes,class,Dehalococcoidia +Candidatus Solibacterales,order,Bryobacterales +'Solibacteraceae',family,Solibacteraceae +'Kopriimonadales',order,Kopriimonadales +'Kopriimonadaceae',family,Kopriimonadaceae +candidate division GN02,phylum,Candidatus Altimarinota +Candidatus Gracilibacteria Rinke et al. 2013,phylum,Candidatus Altimarinota +Ktedobacteria,class,Ktedonobacteria +Ktedobacterales,order,Ktedonobacterales +Ktedobacteraceae,family,Ktedonobacteraceae +'Candidtus Salinosulfoleibacteria',phylum,Candidatus Salinosulfoleibacteria +Catenulisporineae,order,Catenulisporales +Opitutae,class,Opitutia +Opitutia corrig.,class,Opitutia +candidate division Waste Water of Evry 3,phylum,candidate division WWE3 +Candidatus Katanobacteria,phylum,candidate division WWE3 +candidate division ZB3,class,Candidatus Marinamargulisbacteria +Endomicrobia,class,Endomicrobiia +Endomicrobiia corrig. Zheng et al. 2018,class,Endomicrobiia +Litoricolaceae,family,Litorivicinaceae +candidate division WWE1,phylum,Candidatus Cloacimonadota +Candidatus Cloacimonetes Rinke et al. 2013,phylum,Candidatus Cloacimonadota +Aminanaerobia,phylum,Synergistota +Synergistaeota,phylum,Synergistota +Synergistetes Jumas-Bilak et al. 2009,phylum,Synergistota +Synergistota corrig. Jumas-Bilak et al. 2021,phylum,Synergistota +Group TA,family,Syntrophorhabdaceae +Acidobacteria subdivision 8,class,Holophagae +Sulfobacillaceae,family,Clostridiales Family XVII. Incertae Sedis +Bacillales Family XI. Incertae Sedis,family,Gemellaceae +Gemellaceae Chuvochina et al. 2024,family,Gemellaceae +Anaerovoracaceae Chuvochina et al. 2024,family,Anaerovoracaceae +Eubacteriales Family XIII. Incertae Sedis,family,Anaerovoracaceae +Clostridiales Family XVIII. Incertae Sedis,family,Symbiobacteriaceae +Mollicutaeota Oren et al. 2015,phylum,Mycoplasmatota +Mollicutota,phylum,Mycoplasmatota +Tenericutes Murray 1984,phylum,Mycoplasmatota +Sinobacteraceae,family,Nevskiaceae +Solimonadaceae,family,Nevskiaceae +Zetaproteobacteria,class,Candidatius Mariprofundia +Candidatus Mariprofundales,order,Mariprofundales +Methanophagales,order,Candidatus Methanophagales +Actinopolysporineae,order,Actinopolysporales +Mzabimycetaceae Saker et al. 2015,family,Actinopolysporaceae +Kineosporiineae,order,Kineosporiales +candidate division NC10,phylum,Candidatus Methylomirabilota +Synergistaceae Jumas-Bilak et al. 2009,family,Synergistaceae +Candidatus Thaumarchaeota,phylum,Nitrososphaerota +Nitrososphaeraeota,phylum,Nitrososphaerota +Thaumarchaeota,phylum,Nitrososphaerota +Candidatus Methylacidiphilales,order,Methylacidiphilales +Candidatus Methylacidiphilaceae,family,Methylacidiphilaceae +'Salinisphaerales',order,Salinisphaerales +Candidatus Aenigmarchaeota Rinke et al. 2013,phylum,Candidatus Aenigmatarchaeota +Candidatus Diapherotrites Rinke et al. 2013,phylum,Candidatus Iainarchaeota +Candidatus Borkfalkiaceae Hildebrand et al. 2020,family,Christensenellaceae +Candidatus Borkfalkiaceae,family,Christensenellaceae +Candidatus Comantemaea Hildebrand et al. 2019,family,Christensenellaceae +Catabacteraceae,family,Christensenellaceae +Catabacteriaceae,family,Christensenellaceae +candidate division EM 19,phylum,Candidatus Calescibacteriota +Candidatus Calescamantes Rinke et al. 2013,phylum,Candidatus Calescibacteriota +candidate division CD12,phylum,Candidatus Aerophobota +Candidatus Aerophobetes Rinke et al. 2013,phylum,Candidatus Aerophobota +Chthonomonadetes,class,Chthonomonadia +Chthonomonadia corrig.,class,Chthonomonadia +Candidatus Hydrothermae,phylum,Candidatus Hydrothermota +Candidatus Hydrothermota (ex Chuvochina et al. 2019),phylum,Candidatus Hydrothermota +Ignavibacteraeota,phylum,Ignavibacteriota +Ignavibacteriae,phylum,Ignavibacteriota +Ignavibacteria (sic) Podosokorskaya et al. 2011,phylum,Ignavibacteriota +Ignavibacteriota corrig. Podosokorskaya et al. 2021,phylum,Ignavibacteriota +Candidatus Eremiobacteraeota Ji et al. 2017,phylum,Vulcanimicrobiota +Candidatus Eremiobacterota corrig. Ji et al. 2017,phylum,Vulcanimicrobiota +Eremiobacterota,phylum,Vulcanimicrobiota +Candidatus Etaproteobacteria,order,Magnetococcales +Jiangellineae,order,Jiangellales +Methanoplasmatales,order,Methanomassiliicoccales +Nitrospinota corrig. Lucker et al. 2021,phylum,Nitrospinota +Candidatus Zixibacteria Castelle et al. 2013,phylum,Candidatus Zixiibacteriota +Candidate division OctSpa1-106,phylum,Candidatus Fervidibacterota +Candidatus Fervidibacteria Rinke et al. 2013,phylum,Candidatus Fervidibacterota +Candidatus Methanoperedenaceae,family,Candidatus Methanoperedentaceae +candidate division GAL15,phylum,Candidatus Sysuimicrobiota +candidate phylum NAG1,phylum,Candidatus Geoarchaeota +novel archaeal group I,phylum,Candidatus Geoarchaeota +novel archaeal group II,phylum,candidate phylum NAG2 +Candidatus Nanohaloarchaeota Rinke et al. 2013,phylum,Candidatus Nanohalarchaeota +Draconibacteriaceae,family,Prolixibacteraceae +Acidobacteria subdivision 4,class,Blastocatellia +Candidate Phyla Radiation 1,phylum,candidate division CPR1 +Candidate Phyla Radiation 2,phylum,candidate division CPR2 +Candidate Phyla Radiation 3,phylum,candidate division CPR3 +Candidatus Peregrinibacteria Brown et al. 2015,phylum,Candidatus Peregrinibacteriota +Brachyspiriales,order,Brachyspirales +Leptospiriales,order,Leptospirales +Halorubraceae,family,Haloferacaceae +candidate phylum KD3-62,phylum,candidate division KD3-62 +Candidatus Methanofastidiosa Nobu et al. 2016,class,Candidatus Methanofastidiosia +OM60 clade,family,Halieaceae +Candidatus Thorarchaeia Seitz et al. 2016,phylum,Candidatus Thorarchaeota +candidate division Hyd24-12,phylum,Candidatus Fermentibacterota +Candidatus Fermentibacteria Kirkegaard et al. 2016 (phylum),phylum,Candidatus Fermentibacterota +Clostridiales Family XI. Incertae Sedis,class,Tissierellia +Tissierellaceae Wu et al. 2020,family,Tissierellaceae +Candidatus Rokubacteria Hug et al. 2016,phylum,Candidatus Rokuibacteriota +Candidatus Curtissbacteria Brown et al. 2015,phylum,Candidatus Curtissiibacteriota +Candidatus Daviesbacteria Brown et al. 2015,phylum,Candidatus Daviesiibacteriota +Candidatus Levybacteria Brown et al. 2015,phylum,Candidatus Levyibacteriota +Candidatus Gottesmanbacteria Brown et al. 2015,phylum,Candidatus Gottesmaniibacteriota +Candidatus Shapirobacteria Brown et al. 2015,phylum,Candidatus Shapironibacteriota +Candidatus Woesebacteria Brown et al. 2015,phylum,Candidatus Woeseibacteriota +Candidatus Roizmanbacteria Brown et al. 2015,phylum,Candidatus Roizmaniibacteriota +Candidatus Pacebacteria Brown et al. 2015,phylum,Minisyncoccota +Candidatus Paceibacterota,phylum,Minisyncoccota +Candidatus Collierbacteria Brown et al. 2015,phylum,Candidatus Collieribacteriota +Candidatus Beckwithbacteria Brown et al. 2015,phylum,Candidatus Beckwithiibacteriota +Candidatus Campbellbacteria Brown et al. 2015,phylum,Candidatus Campbelliibacteriota +Candidatus Falkowbacteria,phylum,Candidatus Falkowiibacteriota +Candidatus Nomurabacteria Brown et al. 2015,phylum,Candidatus Nomuraibacteriota +Candidatus Amesbacteria Brown et al. 2015,phylum,Candidatus Amesiibacteriota +Candidatus Magasanikbacteria Brown et al. 2015,phylum,Candidatus Magasanikiibacteriota +Candidatus Uhrbacteria Brown et al. 2015,phylum,Candidatus Uhriibacteriota +Candidatus Yanofskybacteria Brown et al. 2015,phylum,Candidatus Yanofskyibacteriota +Candidatus Kaiserbacteria Brown et al. 2015,phylum,Candidatus Kaiseribacteriota +Candidatus Wolfebacteria Brown et al. 2015,phylum,Candidatus Wolfeibacteriota +Candidatus Adlerbacteria Brown et al. 2015,phylum,Candidatus Adleribacteriota +Candidatus Moranbacteria Brown et al. 2015,phylum,Candidatus Moraniibacteriota +Candidatus Giovannonibacteria Brown et al. 2015,phylum,Candidatus Giovannoniibacteriota +Candidatus Jorgensenbacteria Brown et al. 2015,phylum,Candidatus Joergenseniibacteriota +Candidatus Kuenenbacteria Brown et al. 2015,phylum,Candidatus Kueneniibacteriota +Candidatus Azambacteria Brown et al. 2015,phylum,Candidatus Azamiibacteriota +candidate division WPS-1,family,Tepidisphaeraceae +Frateuriaceae,family,Rhodanobacteraceae +Hadesarchaea,class,Candidatus Hadarchaeia +SAGMEG,class,Candidatus Hadarchaeia +Candidatus Tectomicrobia Wilson et al. 2014,phylum,Candidatus Tectimicrobiota +Longimicrobia,class,Longimicrobiia +Longimicrobiia corrig. Pascual et al. 2016,class,Longimicrobiia +Candidatus Fibromonadales Abdul Rahman et al. 2016,order,Candidatus Fibrimonadales +Candidaus Fibromonadaceae Abdul Rahman et al. 2016,family,Candidatus Fibrimonadaceae +Candidatus Abawacabacteria Anantharaman et al. 2016,phylum,Candidatus Abawacaibacteriota +Candidatus Coatesbacteria Anantharaman et al. 2016,phylum,Candidatus Coatesiibacteriota +Candidatus Delongbacteria Anantharaman et al. 2016,phylum,Candidatus Delongiibacteriota +Candidatus Doudnabacteria Anantharaman et al. 2016,phylum,Candidatus Doudnaibacteriota +Candidatus Edwardsbacteria Anantharaman et al. 2016,phylum,Candidatus Edwardsiibacteriota +Candidatus Eisenbacteria Anantharaman et al. 2016,phylum,Candidatus Eiseniibacteriota +Candidatus Firestonebacteria Anantharaman et al. 2016,phylum,Candidatus Firestoneibacteriota +Candidatus Fischerbacteria Anantharaman et al. 2016,phylum,Candidatus Fischeribacteriota +Candidatus Fraserbacteria Anantharaman et al. 2016,phylum,Candidatus Fraseribacteriota +Candidatus Glassbacteria Anantharaman et al. 2016,phylum,Candidatus Glassiibacteriota +Candidatus Handelsmanbacteria Anantharaman et al. 2016,phylum,Candidatus Handelsmaniibacteriota +Candidatus Lindowbacteria Anantharaman et al. 2016,phylum,Candidatus Lindowiibacteriota +Candidatus Margulisbacteria Anantharaman et al. 2016,phylum,Candidatus Margulisiibacteriota +Candidatus Raymondbacteria Anantharaman et al. 2016,phylum,Candidatus Raymondiibacteriota +Candidatus Riflebacteria Anantharaman et al. 2016,phylum,Candidatus Rifleibacteriota +Candidatus Schekmanbacteria Anantharaman et al. 2016,phylum,Candidatus Schekmaniibacteriota +Candidatus Wallbacteria Anantharaman et al. 2016,phylum,Candidatus Walliibacteriota +Candidatus Blackburnbacteria Anantharaman et al. 2016,phylum,Candidatus Blackburniibacteriota +Candidatus Woykebacteria Anantharaman et al. 2016,phylum,Candidatus Woykeibacteriota +Candidatus Chisholmbacteria Anantharaman et al. 2016,phylum,Candidatus Chisholmiibacteriota +Candidatus Andersenbacteria Anantharaman et al. 2016,phylum,Candidatus Anderseniibacteriota +Candidatus Brennerbacteria Anantharaman et al. 2016,phylum,Candidatus Brenneribacteriota +Candidatus Buchananbacteria Anantharaman et al. 2016,phylum,Candidatus Buchananiibacteriota +Candidatus Colwellbacteria Anantharaman et al. 2016,phylum,Candidatus Colwelliibacteriota +Candidatus Harrisonbacteria Anantharaman et al. 2016,phylum,Candidatus Harrisoniibacteriota +Candidatus Jacksonbacteria Anantharaman et al. 2016,phylum,Candidatus Jacksoniibacteriota +Candidatus Kerfeldbacteria Anantharaman et al. 2016,phylum,Candidatus Kerfeldiibacteriota +Candidatus Komeilibacteria Anantharaman et al. 2016,phylum,Candidatus Komeiliibacteriota +Candidatus Liptonbacteria Anantharaman et al. 2016,phylum,Candidatus Liptoniibacteriota +Candidatus Lloydbacteria Anantharaman et al. 2016,phylum,Candidatus Lloydiibacteriota +Candidatus Nealsonbacteria Anantharaman et al. 2016,phylum,Candidatus Nealsoniibacteriota +Candidatus Niyogibacteria Anantharaman et al. 2016,phylum,Candidatus Niyogiibacteriota +Candidatus Portnoybacteria Anantharaman et al. 2016,phylum,Candidatus Portnoyibacteriota +Candidatus Ryanbacteria Anantharaman et al. 2016,phylum,Candidatus Ryaniibacteriota +Candidatus Spechtbacteria Anantharaman et al. 2016,phylum,Candidatus Spechtiibacteriota +Candidatus Staskawiczbacteria Anantharaman et al. 2016,phylum,Candidatus Staskawicziibacteriota +Candidatus Sungbacteria Anantharaman et al. 2016,phylum,Candidatus Sungiibacteriota +Candidatus Tagabacteria Anantharaman et al. 2016,phylum,Candidatus Tagaibacteriota +Candidatus Taylorbacteria Anantharaman et al. 2016,phylum,Candidatus Tayloriibacteriota +Candidatus Terrybacteria Anantharaman et al. 2016,phylum,Candidatus Terryibacteriota +Candidatus Veblenbacteria Anantharaman et al. 2016,phylum,Candidatus Vebleniibacteriota +Candidatus Vogelbacteria Anantharaman et al. 2016,phylum,Candidatus Vogeliibacteriota +Candidatus Wildermuthbacteria Anantharaman et al. 2016,phylum,Candidatus Wildermuthiibacteriota +Candidatus Yonathbacteria Anantharaman et al. 2016,phylum,Candidatus Yonathiibacteriota +Candidatus Zambryskibacteria Anantharaman et al. 2016,phylum,Candidatus Zambryskiibacteriota +Candidatus Desantisbacteria Probst et al. 2017,phylum,Candidatus Desantisiibacteriota +Sporomusa subbranch,family,Sporomusaceae +Rhodothermota corrig. Munoz et al. 2021,phylum,Rhodothermota +Salinibacteraceae Munoz et al. 2017,family,Salinibacteraceae +Bacteroidetes Order III. Incertae sedis,family,Thermonemataceae +Candidatus Kryptonia Eloe-Fadrosh et al. 2016,phylum,Candidatus Kryptoniota +Leptolyngbyoideae,family,Leptolyngbyaceae +Aphanothecoideae,family,Aphanothecaceae +Cyanotrichaceae corrig.,family,Cyanothrichaceae +Pleurocapsaceae,family,Hyellaceae +Microcoleae,family,Microcoleaceae +Phormidiaceae,family,Oscillatoriaceae +Morganellaceae Adeolu et al. 2016,family,Morganellaceae +Candidatus Caenarcaniphilales Soo et al. 2014,order,Candidatus Caenarcanales +Candidatus Methanomethyliales Vanwonterghem et al. 2016,order,Candidatus Methanomethylicales +Candidatus Methanomethyliaceae Vanwonterghem et al. 2016,family,Candidatus Methanomethylicaceae +Holosporineae,order,Holosporales +Kiritimatiellae Spring et al. 2017,class,Kiritimatiellia +Kiritimatiellales Spring et al. 2017,order,Kiritimatiellales +Kiritimatiellaceae Spring et al. 2017,family,Kiritimatiellaceae +Calditrichota corrig. Kublanov et al. 2021,phylum,Calditrichota +Candidatus Heimdallarchaeia,phylum,Candidatus Heimdallarchaeota +Candidatus Heimdallarchaeota (ex Bulzu et al. 2019),phylum,Candidatus Heimdallarchaeota +Balneolota corrig. Hahnke et al. 2021,phylum,Balneolota +'Methylacidiphilae',class,Methylacidiphilae +Calditrichia Kublanov et al. 2022,class,Calditrichia +'Cyanomargaritaceae',family,Cyanomargaritaceae +Candidatus Homeothermaceae,family,Muribaculaceae +Dysgonamonadaceae,family,Dysgonomonadaceae +Dysgonomonadaceae Garcia-Lopez et al. 2020,family,Dysgonomonadaceae +Hydrogenophilalia,class,Hydrogenophilia +Candidatus Goldbacteria Hernsdorf et al. 2017,phylum,Candidatus Goldiibacteriota +Pyrinomonadaceae Wust et al. 2016,family,Pyrinomonadaceae +Candidatus Dormibacteraeota Ji et al. 2017,phylum,Candidatus Dormiibacterota +Emcibacteraceae Iino et al. 2016,family,Emcibacteraceae +candidate division SURF-CP-1,class,Candidatus Abyssobacteria +Candidatus Abyssubacteria Momper et al. 2017,class,Candidatus Abyssobacteria +Candidatus Abyssubacteria,class,Candidatus Abyssobacteria +Candidatus Aureabacteria,phylum,Candidatus Auribacterota +Candidatus Saccharimonia,class,Candidatus Saccharimonadia +Candidatus Saccharimonales McLean et al. 2020,order,Candidatus Saccharimonadales +Abditibacteria,class,Abditibacteriia +Abditibacteriia corrig. Tahon et al. 2018,class,Abditibacteriia +Candidatus Sacchiramonaceae McLean et al. 2020,family,Candidatus Saccharimonadaceae +Vampirovibrionales (ex Soo et al. 2015) Chuvochina et al. 2024,order,Vampirovibrionales +Candidatus Thermoplasmatota,phylum,Thermoplasmatota +Diaforarchaea,phylum,Thermoplasmatota +Thermoplasmatota Chuvochina et al. 2024,phylum,Thermoplasmatota +Candidatus Thermofonsia Ward et al. 2018,class,Candidatus Thermofontia +Candidatus Babeliales Yeoh et al. 2016,order,Candidatus Babeliales +Candidatus Babeliaceae Yeoh et al. 2016,family,Candidatus Babeliaceae +Candidatus Methanomethylophilaceae,family,Methanomethylophilaceae +Methanomethylophilaceae Borrel et al. 2024,family,Methanomethylophilaceae +Candidatus Brocadiae,class,Candidatus Brocadiia +Candidatus Altiarchaeota Probst et al. 2018,phylum,Candidatus Altarchaeota +Candidatus Huberarchaea Probst et al. 2018,phylum,Candidatus Huberarchaeota +Candidatus Thalassarchaea,class,Candidatus Poseidoniia +Candidatus Thalassoarchaea Martin-Cuadrado et al. 2015,class,Candidatus Poseidoniia +Baltobacterales,order,Vulcanimicrobiales +Candidatus Baltobacterales,order,Vulcanimicrobiales +Acuticoccaceae,family,Amorphaceae +Candidatus Krumholzibacteria Youssef et al. 2019,class,Candidatus Krumholzibacteriia +Candidatus Mcinerneyibacteriota Yadav et al. 2020,phylum,Candidatus Macinerneyibacteriota +Candidatus Anoxychlamydiales Dharamshi et al. 2023,order,Candidatus Anoxychlamydiales +Lichenibacteriaceae,family,Lichenihabitantaceae +Candidatus Pyropristinus Coleman et al. 2016,phylum,Candidatus Caldipriscota +Candidatus Stahlbacteria Dombrowski et al. 2017,phylum,Candidatus Stahliibacteriota +Terrimicrobia Garcia-Lopez et al. 2020,class,Terrimicrobiia +Candidatus Muirbacteria Barnum et al. 2018,phylum,Candidatus Muiribacteriota +Longinemaceae,family,Longinemataceae +Thiovulaceae,family,Sulfurimonadaceae +Candidatus Baldrarchaeota (ex Caceres 2019),phylum,Candidatus Baldrarchaeota +Erysipelatoclostridiaceae Zakham et al. 2019,family,Coprobacillaceae +Candidatus Phaeomarinibacteraceae,family,Parvibaculaceae +Candidatus Phaeomarinobacteraceae,family,Parvibaculaceae +Laspinemaceae,family,Laspinemataceae +Cyanobacteriaceae,family,Geminocystaceae +Candidatus Acidoferrales Epihov et al. 2021,order,Candidatus Acidiferrales +Breoghaniaceae,family,Stappiaceae +Pseudoxanthobacteraceae,family,Segnochrobactraceae +Candidatus Freyarchaeota (ex Caceres 2019),phylum,Candidatus Freyarchaeota +Baltobacteraceae,family,Vulcanimicrobiaceae +Candidatus Baltobacteraceae Ward et al. 2019,family,Vulcanimicrobiaceae +Candidatus Xenobia Ji et al. 2021,class,Candidatus Xenobia +Candidatus Eremiobacteria,class,Vulcanimicrobiia +Candidatus Eremiobacteriia corrig. Ward et al. 2019,class,Vulcanimicrobiia +Eremiobacteriia,class,Vulcanimicrobiia +Fodinicurvataceae,family,Rhodovibrionaceae +Candidatus Zymogeniaceaea Murphy et al. 2021,family,Candidatus Zymogenaceae +Aquichromatiaceae Yang et al. 2017,family,Aquichromatiaceae +Cyanobiaceae,family,Prochlorococcaceae +Spirosomaceae Larkin and Borrall 1978 (Approved Lists 1980),family,Spirosomataceae +Spirosomataceae corrig.,family,Spirosomataceae +Candidatus Detorarchales,order,Candidatus Yaplasmales +Candidatus Haloplasmatales,order,Candidatus Halarchaeoplasmatales +Candidatus Haloplasmataceae,family,Candidatus Halarchaeoplasmataceae +Candidatus Chromulinavoraceae,family,Candidatus Chromulinivoraceae +Candidatus Izemoplasmales Zheng et al. 2021,order,Candidatus Izemoplasmatales +Candidatus Izemoplasmaceae Zheng et al. 2021,family,Candidatus Izemoplasmataceae +Candidatus Quolodiales,order,Candidatus Rariloculales +Candidatus Rariloculudales,order,Candidatus Rariloculales +Candidatus Quolodiaceae,family,Candidatus Rariloculaceae +Candidatus Rariloculuceae,family,Candidatus Rariloculaceae +Candidatus Atilosales,order,Candidatus Spongiisociales +Candidatus Spongiisociudales Nguyen 2022,order,Candidatus Spongiisociales +Candidatus Cofanosaceae,family,Candidatus Spongiisociaceae +Candidatus Spongiisociaeae Nguyen 2022,family,Candidatus Spongiisociaceae +Candidatus Aldehyrespiratoraceae Nguyen 2022,family,Candidatus Aldehydirespiratoraceae +Candidatus Naporanaceae,family,Candidatus Aldehydirespiratoraceae +Candidatus Hopanoidivoraceae Nguyen 2022,family,Candidatus Hopanoidivoransaceae +Candidatus Ifrisanaceae,family,Candidatus Hopanoidivoransaceae +Candidatus Poriferisodaliceae Nguyen 2022,family,Candidatus Poriferisodalaceae +Candidatus Rafemanaceae,family,Candidatus Poriferisodalaceae +Candidatus Dadribiales,order,Futianiales +Futianiales Liu et al. 2024,order,Futianiales +Bdellovibrionota Waite et al. 2021,phylum,Bdellovibrionota +Wohlfahrtiimonadaceae Chuvochina et al. 2024,family,Ignatzschineriaceae +Wohlfahrtiimonadaceae,family,Ignatzschineriaceae +Candidatus Cutipiscaceae,family,Candidatus Spongiicolonaceae +Candidatus Stagruxiaceae,family,Candidatus Oxydemutatoraceae +Candidatus Fedufriales,order,Candidatus Porifericomitales +Candidatus Fedufriaceae,family,Candidatus Porifericomitaceae +Candidatus Afracanaceae,family,Candidatus Azotimanducaceae +Candidatus Azophiluceae,family,Candidatus Azotimanducaceae +Candidatus Salivitaceae,family,Candidatus Azotimanducaceae +Candidatus Dostaciales,order,Candidatus Foliamicales +Candidatus Dostaciaceae,family,Candidatus Foliamicaceae +Desulfobacteriaceae Galushko and Kuever 2021,family,Desulfobacteriaceae +Desulfocucumaceae Watanabe et al. 2021,family,Desulfocucumaceae +Desulfocucumeraceae corrig. Watanabe et al. 2021,family,Desulfocucumaceae +Natronogracilivirgulaceae,family,Cyclonatronaceae +Thermomicrobaeota,phylum,Thermomicrobiota +Thermomicrobiota corrig. Garrity and Holt 2021,phylum,Thermomicrobiota +Gloeobacteria,class,Cyanophyceae +Candidatus Debefiota,phylum,Candidatus Electryoneota +Candidatus Hisadosaceae,family,Candidatus Poriferihabitaceae +Candidatus Tinosarchaceae,family,Candidatus Haiyanarchaeaceae +Clostridium thermoautotrophicum group,order,Neomorellales +cluster VII,order,Neomorellales +Moorella group,order,Neomorellales +Moorellales,order,Neomorellales +Moorellaceae,family,Neomoorellaceae +Candidatus Podoxiota,phylum,Candidatus Lernaellota +Candidatus Urusiota,phylum,Candidatus Hinthialibacterota +Alterococcaeae,family,Alterococcaceae +Steroidobacterales Chuvochina et al. 2024,order,Steroidobacterales +Candidatus Fumotiscaceae,family,Candidatus Subterrananammoxibiaceae +Haladaptataceae Chuvochina et al. 2024,family,Haladaptataceae +Candidatus Asgardarchaeia (ex Eme et al. 2023),class,Candidatus Asgardarchaeia (ex Tamarit et al. 2024) +Candidatus Asgardarchaeia,class,Candidatus Asgardarchaeia (ex Tamarit et al. 2024) +Candidatus Asgardarchaeales (ex Eme et al. 2023),order,Candidatus Asgardarchaeales (ex Tamarit et al. 2024) +Candidatus Asgardarchaeales,order,Candidatus Asgardarchaeales (ex Tamarit et al. 2024) +Candidatus Asgardarchaceae,family,Candidatus Asgardarchaeaceae +Caldicellulosiruptorales Chuvochina et al. 2024,order,Caldicellulosiruptorales +Caldicellulosiruptoraceae Chuvochina et al. 2024,family,Caldicellulosiruptoraceae +Candidatus Caldiarchaeales Cavalier-Smith 2014,order,Candidatus Caldarchaeales +Candidatus Caldarchaeaceae corrig. Rinke et al. 2021,family,Candidatus Caldarchaeaceae +Candidatus Caldiarchaeaceae,family,Candidatus Caldarchaeaceae +Candidatus Modulibacteria Sekiguchi et al. 2015,phylum,Candidatus Moduliflexota +Candidatus Saxararchaceae,family,Candidatus Bathyarchaeaceae +Candidatus Syntraliphaticia Liu et al. 2020,class,Candidatus Syntrophaliphaticia +Candidatus Hakubanellales Merino et al. 2020,order,Candidatus Hakubellales +Candidatus Hakubanellaceae Merino et al. 2020,family,Candidatus Hakubellaceae +Candidatus Hebobacteria Carlton et al. 2023,class,Candidatus Hebobacteria +Candidatus Mixasiia,class,Candidatus Hebobacteria +Candidatus Pufisiia,class,Candidatus Zipacnadia +Candidatus Zipacnadia Carlton et al. 2023,class,Candidatus Zipacnadia +Candidatus Hebobacterales Carlton et al. 2023,order,Candidatus Hebobacterales +Candidatus Lablamiales,order,Candidatus Hebobacterales +Candidatus Pufisiales,order,Candidatus Zipacnadales +Candidatus Idrufitiaceae,family,Candidatus Hebobacteraceae +Candidatus Pufisiaceae,family,Candidatus Zipacnadaceae +Salinicoccaceae Chuvochina et al. 2024,family,Salinicoccaceae +Candidatus Tiserarchaceae,family,Candidatus Calditenuaceae +Leptolyngbyales Chuvochina et al. 2024,order,Leptolyngbyales +Candidatus Borkfalkiales,order,Christensenellales +Candidatus Nupofiia,class,Candidatus Fermentithermobacillia +Candidatus Nupofiales,order,Candidatus Fermentithermobacillales +Candidatus Nupofiaceae,family,Candidatus Fermentithermobacillaceae +Candidatus Altiarchaeaceae Probst et al. 2014,family,Candidatus Altarchaeaceae +Candidatus Caldatribacteriota Hahn et al. 2020,phylum,Candidatus Caldatribacteriota +Vampirovibrionia Chuvochina et al. 2024,class,Vampirovibriophyceae +Vampirovibrionophyceae corrig.,class,Vampirovibriophyceae +"Vampirovibriophyceae Strunecky & Mares, 2023",class,Vampirovibriophyceae +Leptospiria Chuvochina et al. 2024,class,Leptospiria +Candidatus Paceibacteria,class,Minisyncoccia +Candidatus Paceibacterales,order,Minisyncoccales +Phormidesmales,order,Phormidesmidales +Phormidesmidales corrig.,order,Phormidesmidales +Amphibacillaceae Chuvochina et al. 2024,family,Amphibacillaceae +Anoxybacillaceae Chuvochina et al. 2024,family,Anoxybacillaceae +Fictibacillaceae Chuvochina et al. 2024,family,Fictibacillaceae +Candidatus Sepodriales,order,Natronospirales +Candidatus Sepodriaceae,family,Natronospiraceae +Candidatus Minisyncoccaceae,family,Minisyncoccaceae +Candidatus Merdousiaceae Pallen et al. 2022,family,Intestinicryptomonaceae +Candidatus Merdousiaceae,family,Intestinicryptomonaceae +Candidatus Lokiarchaeota,phylum,Promethearchaeota +Candidatus Lokiarchaeia Bulzu et al. 2019,class,Promethearchaeia +Candidatus Lokiarchaeia,class,Promethearchaeia +Candidatus Prometheoarchaeales Pallen et al. 2022,order,Promethearchaeales +Candidatus Prometheoarchaeales,order,Promethearchaeales +Candidatus Prometheoarchaeaceae,family,Promethearchaeaceae +Candidatus Nitrosotaleales,order,Nitrosotaleales +Candidatus Idupariales,order,Candidatus Australimonadales +Candidatus Idupariaceae,family,Candidatus Australimonadaceae +Candidatus Udisosales,order,Candidatus Eutrophobiales +Candidatus Udisosaceae,family,Candidatus Eutrophobiaceae +Candidatus Otrunosaceae,family,Candidatus Marisalimonadaceae +Candidatus Fogupanaceae,family,Candidatus Seribacteraceae +Candidatus Polydorabacteraceae,family,Candidatus Polydorabacteraceae (nom. illeg.) +Candidatus Methanogastraceae corrig. Chadwick et al. 2022,family,Candidatus Methanogasteraceae +Candidatus Usuriscales,order,Candidatus Tepidiaquacellales +Candidatus Methanomethylia Vanwonterghem et al. 2016,class,Methanosuratincolia +Candidatus Methanomethylicia,class,Methanosuratincolia +Candidatus Methanosuratincolia,class,Methanosuratincolia +Candidatus Methanosuratincolales,order,Methanosuratincolales +Candidatus Methanosuratincolaceae,family,Methanosuratincolaceae +Candidatus Heimdallarchaeia,class,Candidatus Heimdallarchaeia (ex Rinke et al. 2021) (nom. nud.) +Candidatus Usinibraceae,family,Candidatus Phycocordibacteraceae diff --git a/data-raw/taxon_synonyms.Rmd b/data-raw/taxon_synonyms.Rmd new file mode 100644 index 0000000..478bc47 --- /dev/null +++ b/data-raw/taxon_synonyms.Rmd @@ -0,0 +1,112 @@ +```{r message=FALSE} +library(tidyverse) +``` + +## Synonyms from LPSN + +LPSN covers the ranks of genus and species + +```{r} +lpsn_synonyms <- read_csv("lpsn_synonyms.csv", col_types = "ccc") |> + distinct(name, rank, correct_name) +``` + +```{r} +lpsn_synonyms |> + count(rank) +``` + +Find any names that may resolve to more than one correct name. + +```{r} +lpsn_synonyms |> + group_by(name) |> + filter(n() > 1) +``` + +Fix issues: + + * Bacillus pallidus is an illegitimate name for Falsibacillus pallidus, + should resolve to Aeribacillus pallidus. + +```{r} +lpsn_synonyms_unique <- lpsn_synonyms |> + filter(!( + (name %in% "Bacillus pallidus") & + (correct_name %in% "Falsibacillus pallidus"))) +``` + +Check again. + +```{r} +lpsn_synonyms_unique |> + group_by(name) |> + filter(n() > 1) +``` + +## Synonyms from NCBI + +```{r} +ncbi_synonyms <- read_csv("ncbi_synonyms.csv", col_types = "ccc") +``` + +```{r} +ncbi_synonyms |> + count(rank) +``` + +Find any names that may resolve to more than one correct name. + +```{r} +ncbi_duplicate_synonyms <- ncbi_synonyms |> + group_by(name) |> + filter(n() > 1) |> + ungroup() |> + arrange(name, rank) +ncbi_duplicate_synonyms +``` + +When a name could potentially resolve to more than one correct name at NCBI, +it resolves to two taxa, one at the phylum level and one at the class level. +Fix by always resolving to the phylum level. + +```{r} +ncbi_duplicate_synonyms_fixed <- ncbi_duplicate_synonyms |> + filter(rank %in% "phylum") +``` + +```{r} +ncbi_synonyms_unique <- ncbi_synonyms |> + group_by(name) |> + filter(n() == 1) |> + ungroup() |> + bind_rows(ncbi_duplicate_synonyms_fixed) +``` + +## Extra synonyms + +Amazingly, Firmicutes is not listed as a synonym of Bacillota at NCBI + +```{r} +extra_synonyms_unique <- read_csv("extra_synonyms.csv", col_types = "ccc") +``` + +## Combine synonym tables and export + +```{r} +taxon_synonyms <- bind_rows( + lpsn_synonyms_unique, + ncbi_synonyms_unique, + extra_synonyms_unique +) +``` + +```{r} +taxon_synonyms |> + count(rank, sort = TRUE) +``` + +```{r} +usethis::use_data(taxon_synonyms, overwrite = TRUE) +``` + From a4b7bb7840bcba84b4b2d8b22093d31c7fa57b63 Mon Sep 17 00:00:00 2001 From: Kyle Bittinger Date: Wed, 1 Apr 2026 16:20:20 -0400 Subject: [PATCH 03/17] R version bump --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index e8c68a0..703fb6d 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -14,5 +14,5 @@ Suggests: rmarkdown, testthat (>= 3.0.0) Depends: - R (>= 2.10) + R (>= 3.5) Config/testthat/edition: 3 From 30b65d379e04730633b4e880dc2dfce70aa33cb3 Mon Sep 17 00:00:00 2001 From: Kyle Bittinger Date: Wed, 1 Apr 2026 16:20:41 -0400 Subject: [PATCH 04/17] Add taxon_synonyms data to package --- data/taxon_synonyms.rda | Bin 0 -> 82830 bytes 1 file changed, 0 insertions(+), 0 deletions(-) create mode 100644 data/taxon_synonyms.rda diff --git a/data/taxon_synonyms.rda b/data/taxon_synonyms.rda new file mode 100644 index 0000000000000000000000000000000000000000..b46a9e9cbffc1b3dc4787a9e5a7a6e8b862d473d GIT binary patch literal 82830 zcmV)eK&HP!T4*^jL0KkKS=<`5U;&pq|Hc3R|NsC0|LMQ~|M0*6|L{NnAOH{m00H6o 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zX`v`WkUbAU;S+Dt9R`*lDF`xUI3Ks?_}P%B>U~T;(=WB$`x%c{*qC!UIP#C8SFoR0 zm~?>Q?E1XEi?@`VPthk^Xq8&OUhmoDG<(L6il>Kc_lV4lX&7J8x&EX1c5-rERn0g} zC#ASxJky}rNb*w3nRofiaaC?HlL~D$DeG}k+iuK#{T$tz!A?!1E||W38nui!lM5?y zZenw#ahbS%UZSd=K>@-s38IrODsoPa4SLr` d%rvYSWyk$r|9}5~)VKfmyOJrwgofbNqX5`pE-U~5 literal 0 HcmV?d00001 From 457010e66e97934d89fa0fa949752e7de9ccf9e8 Mon Sep 17 00:00:00 2001 From: Kyle Bittinger Date: Wed, 1 Apr 2026 21:47:53 -0400 Subject: [PATCH 05/17] Document data object --- DESCRIPTION | 2 +- R/data.R | 64 +++++++++++++++++++++++++------------------ man/taxon_synonyms.Rd | 22 +++++++++++++++ 3 files changed, 60 insertions(+), 28 deletions(-) create mode 100644 man/taxon_synonyms.Rd diff --git a/DESCRIPTION b/DESCRIPTION index 703fb6d..a2b7282 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -8,7 +8,7 @@ License: GPL-3 Encoding: UTF-8 LazyData: true Roxygen: list(markdown = TRUE) -RoxygenNote: 7.3.1 +RoxygenNote: 7.3.3 Suggests: knitr, rmarkdown, diff --git a/R/data.R b/R/data.R index 1261eeb..de69fd2 100644 --- a/R/data.R +++ b/R/data.R @@ -1,27 +1,37 @@ -#' Gram stain and aerobic status of bacterial taxa -#' @format A data frame with the following columns: -#' \describe{ -#' \item{taxon}{The name of the taxon} -#' \item{rank}{The rank of the taxon} -#' \item{aerobic_status}{ -#' The aerobic status. One of "aerobe", "facultative anaerobe", or -#' "obligate anaerobe".} -#' \item{gram_stain}{ -#' How the taxon appears when Gram-stained. One of "Gram-positive" or -#' "Gram-negative".} -#' \item{doi}{DOI of the publication from which the information was obtained.} -#' } -"taxon_phenotypes" - -#' Antibiotic susceptibility of bacterial taxa -#' @format A data frame with the following columns: -#' \describe{ -#' \item{taxon}{The name of the taxon} -#' \item{rank}{The rank of the taxon} -#' \item{antibiotic}{The antibiotic or antibiotic class} -#' \item{value}{ -#' The susceptibility of the taxon to the antibiotic, one of "susceptible" -#' or "resistant".} -#' \item{doi}{DOI of the publication from which the information was obtained.} -#' } -"taxon_susceptibility" +#' Gram stain and aerobic status of bacterial taxa +#' @format A data frame with the following columns: +#' \describe{ +#' \item{taxon}{The name of the taxon} +#' \item{rank}{The rank of the taxon} +#' \item{aerobic_status}{ +#' The aerobic status. One of "aerobe", "facultative anaerobe", or +#' "obligate anaerobe".} +#' \item{gram_stain}{ +#' How the taxon appears when Gram-stained. One of "Gram-positive" or +#' "Gram-negative".} +#' \item{doi}{DOI of the publication from which the information was obtained.} +#' } +"taxon_phenotypes" + +#' Antibiotic susceptibility of bacterial taxa +#' @format A data frame with the following columns: +#' \describe{ +#' \item{taxon}{The name of the taxon} +#' \item{rank}{The rank of the taxon} +#' \item{antibiotic}{The antibiotic or antibiotic class} +#' \item{value}{ +#' The susceptibility of the taxon to the antibiotic, one of "susceptible" +#' or "resistant".} +#' \item{doi}{DOI of the publication from which the information was obtained.} +#' } +"taxon_susceptibility" + +#' Synonyms for bacterial taxa +#' @format A data frame with the following columns: +#' \describe{ +#' \item{name}{The synonym} +#' \item{rank}{The rank of the taxon} +#' \item{correct_name}{The "correct" name for the taxon, as it is used in +#' other package data.} +#' } +"taxon_synonyms" \ No newline at end of file diff --git a/man/taxon_synonyms.Rd b/man/taxon_synonyms.Rd new file mode 100644 index 0000000..b4f3263 --- /dev/null +++ b/man/taxon_synonyms.Rd @@ -0,0 +1,22 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/data.R +\docType{data} +\name{taxon_synonyms} +\alias{taxon_synonyms} +\title{Synonyms for bacterial taxa} +\format{ +A data frame with the following columns: +\describe{ +\item{name}{The synonym} +\item{rank}{The rank of the taxon} +\item{correct_name}{The "correct" name for the taxon, as it is used in +other package data.} +} +} +\usage{ +taxon_synonyms +} +\description{ +Synonyms for bacterial taxa +} +\keyword{datasets} From d6af2bed707a9672c418776029253ea30a6e4c97 Mon Sep 17 00:00:00 2001 From: Kyle Bittinger Date: Wed, 1 Apr 2026 21:52:15 -0400 Subject: [PATCH 06/17] Fix line endings in what.R and test-match.R --- R/what.R | 324 ++++++++++++++--------------- tests/testthat/test-match.R | 404 ++++++++++++++++++------------------ 2 files changed, 364 insertions(+), 364 deletions(-) diff --git a/R/what.R b/R/what.R index 6dd6199..11b350e 100644 --- a/R/what.R +++ b/R/what.R @@ -1,162 +1,162 @@ -#' Fetch susceptibility values for a given lineage and antibiotic -#' -#' @param lineage A character vector of taxonomic assignments or lineages -#' @param antibiotic The name of the antibiotic or antibiotic class in \code{db} -#' @param db A data frame with columns named "taxon", "rank", "antibiotic", -#' and "value" -#' @return A vector of assigned susceptibility values, which should be either -#' "susceptible", "resistant", or \code{NA} -#' @details -#' To determine susceptibility, the database is first filtered to include only -#' rows relevant to the antibiotic of interest. Then, the filtered database is -#' split into ranks. The susceptibility values are determined for each rank by -#' matching taxa from the rank-specific database to the vector of lineages. -#' If a lineage matches to multiple taxa of different ranks, the value of the -#' taxon with the lowest rank is selected. -#' -#' The taxonomic ranks, in order from highest to lowest, are Kingdom, Phylum, -#' Class, Order, Family, Genus, and Species. The ranks in the database must be -#' capitalized, exactly as they are written here. -#' @examples -#' what_antibiotic( -#' c("Enterococcus faecalis", "Lactobacillus", "Lactobacillus delbrueckii"), -#' "vancomycin") -#' @export -what_antibiotic <- function (lineage, - antibiotic, - db = taxon_susceptibility) { - is_relevant <- db$antibiotic %in% antibiotic - db <- db[is_relevant, c("taxon", "rank", "value")] - - susceptibility_values <- match_annotation(lineage, db) - susceptibility_values -} - -#' Fetch the phenotype values for a given lineage and phenotype -#' -#' @param lineage A character vector of taxonomic assignments or lineages -#' @param phenotype The name of the column in \code{db} that contains the -#' phenotype of interest -#' @param db A data frame with columns named "taxon", "rank", and the column -#' name specified in \code{phenotype} -#' @return A vector of assigned phenotype values -#' @details -#' This function operates much like \code{antibiotic_susceptibility}, except -#' that it pulls phenotype values from the database instead of susceptibility -#' information. To subsequently determine susceptibility from phenotype, this -#' function uses the named vector provided in the \code{susceptibility} -#' argument. -#' -#' As a reminder, the taxonomic ranks, in order from highest to lowest, are -#' Kingdom, Phylum, Class, Order, Family, Genus, and Species. The ranks in the -#' database must be capitalized, exactly as they are written here. -#' @examples -#' what_phenotype( -#' c("Bacteroidetes", "Firmicutes", "Firmicutes; Negativicutes"), -#' "gram_stain") -#' @export -what_phenotype <- function (lineage, - phenotype, - db = taxon_phenotypes) { - db <- db[, c("taxon", "rank", phenotype)] - # match_annotation() requires a column named "value" - colnames(db)[3] <- "value" - match_annotation(lineage, db) -} - -#' Determine the annotation values for each lineage -#' -#' @param lineage A vector of taxonomic assignments or lineages -#' @param db A data frame with columns named "taxon", "rank", and "value" -#' @return A vector of assigned values -#' -#' @export -match_annotation <- function (lineage, db) { - get_rank_specific_db <- function (r) { - rank_is_r <- db[["rank"]] %in% r - db[rank_is_r,] - } - db_ranks <- lapply(rev(taxonomic_ranks), get_rank_specific_db) - names(db_ranks) <- rev(taxonomic_ranks) - - get_values_by_rank <- function (rank_specific_db) { - taxa_idx <- match_taxa(lineage, rank_specific_db[["taxon"]]) - rank_specific_db[["value"]][taxa_idx] - } - values_by_rank <- vapply( - db_ranks, - get_values_by_rank, - rep("a", length(lineage))) - - if (length(lineage) == 1) { - assigned_values <- first_non_na_value(values_by_rank) - } else { - assigned_values <- apply(values_by_rank, 1, first_non_na_value) - } - assigned_values -} - -# The 'official' taxonomic ranks supported by this package -taxonomic_ranks <- c( - "Kingdom", "Phylum", "Class", "Order", "Family", "Genus", "Species") - -# Return the first value that is not NA. If all values are NA, return NA. The -# resultant vector will not have names. -first_non_na_value <- function (x) { - unname(x[first_true_idx(!is.na(x))]) -} - -# For each lineage, return the index of the taxon that is found within the -# lineage. If no taxa are found, return NA for that element. If multiple taxa -# are found, we issue a warning and return the index of the first taxon in the -# vector of taxa. -match_taxa <- function (lineages, taxa) { - n_lineages <- length(lineages) - if (length(taxa) == 0) { - return(rep_len(NA_character_, length(lineages))) - } - - taxa_patterns <- paste0("(?<=__|\\b)(?:", taxa, ")\\b") - lineage_matches <- vapply( - X = taxa_patterns, - FUN = grepl, - FUN.VALUE = rep_len(TRUE, n_lineages), - x = lineages, - perl = TRUE, - USE.NAMES = TRUE) - - # If the user passes only one lineage, lineage_matches will be a vector - # rather than an array. After some trial and error, I found that it's better - # to deal with this at each stage of the computation, rather than trying to - # coerce the vector to an array up front. - if (n_lineages == 1) { - multi_matches <- sum(lineage_matches) > 1 - } else { - multi_matches <- rowSums(lineage_matches) > 1 - } - if (any(multi_matches)) { - warning( - "The following lineages match more than one taxon:\n", - paste(lineages[multi_matches], collapse = "\n"), "\n") - } - - if (n_lineages == 1) { - taxon_idx <- first_true_idx(lineage_matches) - } else { - taxon_idx <- apply(lineage_matches, 1, first_true_idx) - } - taxon_idx -} - -#' Return the first index of a boolean vector that is TRUE. If all elements of -#' the vector are FALSE, return NA. Tempted to call this function minwhich. -#' -#' @param x A logical vector -#' @return index of first true in vector or NA -first_true_idx <- function (x) { - if (any(x)) { - min(which(x == TRUE)) - } else { - NA_integer_ - } -} +#' Fetch susceptibility values for a given lineage and antibiotic +#' +#' @param lineage A character vector of taxonomic assignments or lineages +#' @param antibiotic The name of the antibiotic or antibiotic class in \code{db} +#' @param db A data frame with columns named "taxon", "rank", "antibiotic", +#' and "value" +#' @return A vector of assigned susceptibility values, which should be either +#' "susceptible", "resistant", or \code{NA} +#' @details +#' To determine susceptibility, the database is first filtered to include only +#' rows relevant to the antibiotic of interest. Then, the filtered database is +#' split into ranks. The susceptibility values are determined for each rank by +#' matching taxa from the rank-specific database to the vector of lineages. +#' If a lineage matches to multiple taxa of different ranks, the value of the +#' taxon with the lowest rank is selected. +#' +#' The taxonomic ranks, in order from highest to lowest, are Kingdom, Phylum, +#' Class, Order, Family, Genus, and Species. The ranks in the database must be +#' capitalized, exactly as they are written here. +#' @examples +#' what_antibiotic( +#' c("Enterococcus faecalis", "Lactobacillus", "Lactobacillus delbrueckii"), +#' "vancomycin") +#' @export +what_antibiotic <- function (lineage, + antibiotic, + db = taxon_susceptibility) { + is_relevant <- db$antibiotic %in% antibiotic + db <- db[is_relevant, c("taxon", "rank", "value")] + + susceptibility_values <- match_annotation(lineage, db) + susceptibility_values +} + +#' Fetch the phenotype values for a given lineage and phenotype +#' +#' @param lineage A character vector of taxonomic assignments or lineages +#' @param phenotype The name of the column in \code{db} that contains the +#' phenotype of interest +#' @param db A data frame with columns named "taxon", "rank", and the column +#' name specified in \code{phenotype} +#' @return A vector of assigned phenotype values +#' @details +#' This function operates much like \code{antibiotic_susceptibility}, except +#' that it pulls phenotype values from the database instead of susceptibility +#' information. To subsequently determine susceptibility from phenotype, this +#' function uses the named vector provided in the \code{susceptibility} +#' argument. +#' +#' As a reminder, the taxonomic ranks, in order from highest to lowest, are +#' Kingdom, Phylum, Class, Order, Family, Genus, and Species. The ranks in the +#' database must be capitalized, exactly as they are written here. +#' @examples +#' what_phenotype( +#' c("Bacteroidetes", "Firmicutes", "Firmicutes; Negativicutes"), +#' "gram_stain") +#' @export +what_phenotype <- function (lineage, + phenotype, + db = taxon_phenotypes) { + db <- db[, c("taxon", "rank", phenotype)] + # match_annotation() requires a column named "value" + colnames(db)[3] <- "value" + match_annotation(lineage, db) +} + +#' Determine the annotation values for each lineage +#' +#' @param lineage A vector of taxonomic assignments or lineages +#' @param db A data frame with columns named "taxon", "rank", and "value" +#' @return A vector of assigned values +#' +#' @export +match_annotation <- function (lineage, db) { + get_rank_specific_db <- function (r) { + rank_is_r <- db[["rank"]] %in% r + db[rank_is_r,] + } + db_ranks <- lapply(rev(taxonomic_ranks), get_rank_specific_db) + names(db_ranks) <- rev(taxonomic_ranks) + + get_values_by_rank <- function (rank_specific_db) { + taxa_idx <- match_taxa(lineage, rank_specific_db[["taxon"]]) + rank_specific_db[["value"]][taxa_idx] + } + values_by_rank <- vapply( + db_ranks, + get_values_by_rank, + rep("a", length(lineage))) + + if (length(lineage) == 1) { + assigned_values <- first_non_na_value(values_by_rank) + } else { + assigned_values <- apply(values_by_rank, 1, first_non_na_value) + } + assigned_values +} + +# The 'official' taxonomic ranks supported by this package +taxonomic_ranks <- c( + "Kingdom", "Phylum", "Class", "Order", "Family", "Genus", "Species") + +# Return the first value that is not NA. If all values are NA, return NA. The +# resultant vector will not have names. +first_non_na_value <- function (x) { + unname(x[first_true_idx(!is.na(x))]) +} + +# For each lineage, return the index of the taxon that is found within the +# lineage. If no taxa are found, return NA for that element. If multiple taxa +# are found, we issue a warning and return the index of the first taxon in the +# vector of taxa. +match_taxa <- function (lineages, taxa) { + n_lineages <- length(lineages) + if (length(taxa) == 0) { + return(rep_len(NA_character_, length(lineages))) + } + + taxa_patterns <- paste0("(?<=__|\\b)(?:", taxa, ")\\b") + lineage_matches <- vapply( + X = taxa_patterns, + FUN = grepl, + FUN.VALUE = rep_len(TRUE, n_lineages), + x = lineages, + perl = TRUE, + USE.NAMES = TRUE) + + # If the user passes only one lineage, lineage_matches will be a vector + # rather than an array. After some trial and error, I found that it's better + # to deal with this at each stage of the computation, rather than trying to + # coerce the vector to an array up front. + if (n_lineages == 1) { + multi_matches <- sum(lineage_matches) > 1 + } else { + multi_matches <- rowSums(lineage_matches) > 1 + } + if (any(multi_matches)) { + warning( + "The following lineages match more than one taxon:\n", + paste(lineages[multi_matches], collapse = "\n"), "\n") + } + + if (n_lineages == 1) { + taxon_idx <- first_true_idx(lineage_matches) + } else { + taxon_idx <- apply(lineage_matches, 1, first_true_idx) + } + taxon_idx +} + +#' Return the first index of a boolean vector that is TRUE. If all elements of +#' the vector are FALSE, return NA. Tempted to call this function minwhich. +#' +#' @param x A logical vector +#' @return index of first true in vector or NA +first_true_idx <- function (x) { + if (any(x)) { + min(which(x == TRUE)) + } else { + NA_integer_ + } +} diff --git a/tests/testthat/test-match.R b/tests/testthat/test-match.R index 2ad7f2f..0cf28a1 100644 --- a/tests/testthat/test-match.R +++ b/tests/testthat/test-match.R @@ -1,202 +1,202 @@ -gram_stain_db <- data.frame( - taxon = c( - "Actinobacteria", "Bacteroidetes", "Firmicutes", - "Negativicutes", "Proteobacteria"), - rank = c("Phylum", "Phylum", "Phylum", "Class", "Phylum"), - value = c( - "Gram-positive", "Gram-negative", "Gram-positive", - "Gram-negative", "Gram-negative"), - stringsAsFactors = FALSE) - -vanco_db <- data.frame( - taxon = c( - "Lactobacillus", "Enterococcus flavescens", "Lactobacillus delbrueckii", - "Lactobacillus lactis", "Lactobacillus casei"), - rank = c("Genus", "Species", "Species", "Species", "Species"), - value = c( - "resistant", "resistant", "susceptible", "susceptible", "resistant"), - antibiotic = "vancomycin", - stringsAsFactors = FALSE) - -tetra_db <- data.frame( - taxon = c("Escherichia coli", "Enterococcus faecalis", "Klebsiella"), - rank = c("Species", "Species", "Genus"), - value = c("resistant", "resistant", "susceptible"), - antibiotic = "tetracycline", - stringsAsFactors = FALSE) - -test_that("what_antibiotic works for vancomycin data", { - expect_equal( - what_antibiotic( - c("Enterococcus faecalis", - "Lactobacillus", - "Lactobacillus delbrueckii"), - "vancomycin", db = vanco_db), - c(NA, "resistant", "susceptible")) -}) - -test_that("what_antibiotic works for tetracycline data", { - expect_equal( - what_antibiotic( - c("Enterococcus faecalis", - "Lactobacillus", - "Lactobacillus delbrueckii"), - "tetracycline", db = tetra_db), - c("resistant", NA, NA)) -}) - -test_that("what_antibiotic works for multi-abx data", { - mixed_db <- rbind(vanco_db, tetra_db) - expect_equal( - what_antibiotic( - c("Enterococcus faecalis", - "Lactobacillus", - "Lactobacillus delbrueckii"), - "vancomycin", db = mixed_db), - c(NA, "resistant", "susceptible")) - expect_equal( - what_antibiotic( - c("Enterococcus faecalis", - "Lactobacillus", - "Lactobacillus delbrueckii"), - "tetracycline", db = mixed_db), - c("resistant", NA, NA)) -}) - -test_that("what_phenotype works for normal input", { - pheno_db <- gram_stain_db - colnames(pheno_db)[3] <- "gram_stain" - - expect_equal( - what_phenotype( - c("Bacteroidetes", "Firmicutes", "Firmicutes Negativicutes"), - "gram_stain", - pheno_db), - c("Gram-negative", "Gram-positive", "Gram-negative")) -}) - -test_that("match_annotation works for normal input", { - # For the lineage "Firmicutes Negativicutes", the phenotype value for - # Negativicutes (Gram-negative) should override the value for Firmicutes - # (Gram-positive) - expect_equal( - match_annotation( - c("Bacteroidetes", "Firmicutes", "Firmicutes Negativicutes"), - gram_stain_db), - c("Gram-negative", "Gram-positive", "Gram-negative")) -}) - -test_that("match_annotation works for lineage of length 1", { - expect_equal( - match_annotation("Bacteroidetes", gram_stain_db), - "Gram-negative") -}) - -test_that("match_annotation works for empty lineage vector", { - expect_equal(match_annotation(character(), gram_stain_db), character()) -}) - -test_that("match_annotation works for database of length 1", { - expect_equal( - match_annotation( - c("Bacteroidetes", "Firmicutes", "Firmicutes Negativicutes"), - gram_stain_db[2,]), - c("Gram-negative", NA, NA)) -}) - -test_that("match_annotation works for empty database", { - expect_equal( - match_annotation( - c("Bacteroidetes", "Firmicutes", "Firmicutes Negativicutes"), - gram_stain_db[integer(),]), - as.character(c(NA, NA, NA))) -}) - -test_that("first_non_na_value works for multiple non-NA values", { - expect_equal(first_non_na_value(c(NA, NA, "a", NA, "b", NA)), "a") -}) - -test_that("first_non_na_value returns NA if all values are NA", { - na_chars <- as.character(c(NA, NA, NA, NA)) - expect_equal(first_non_na_value(na_chars), NA_character_) -}) - -test_that("match_taxa works for normal input", { - expect_equal( - match_taxa( - c("Bacteroidetes; hgj", "Bacteria - Firmicutes", "kgj", "jasfdljh"), - c("Firmicutes", "Bacteroidetes", "Proteobacteria")), - c(2, 1, NA, NA)) -}) - -test_that("match_taxa works for taxa with prefixes", { - prefix_lineage <- c( - "p__Bacteroidetes; hgj", - "k__Bacteria - p__Firmicutes", - "g__kgj", - "s__jasfdljh") - taxa <- c("Firmicutes", "Bacteroidetes", "Proteobacteria") - expect_equal( - match_taxa(prefix_lineage, taxa), - c(2, 1, NA, NA)) -}) - -test_that("match_taxa works for species names", { - species_lineage <- c( - "Bacteroidetes - Bacteroides vulgatus", - "Enterobacteriaceae; Escherichia; Escherichia coli", - "kgj vulgatus", - "Bacteroidetes - Bacteroides") - species_taxa <- c( - "Escherichia coli", - "Bacteroides vulgatus") - expect_equal( - match_taxa(species_lineage, species_taxa), - c(2, 1, NA, NA)) -}) - -test_that("match_taxa works for lineage vectors of length 1", { - expect_equal( - match_taxa( - "Bacteroidetes; hgj", - c("Firmicutes", "Bacteroidetes", "Proteobacteria")), - 2) -}) - -test_that("match_taxa works for taxa vectors of length 1", { - expect_equal( - match_taxa( - c("Bacteroidetes; hgj", "Bacteria - Firmicutes", "kgj", "jasfdljh"), - "Firmicutes"), - c(NA, 1, NA, NA)) -}) - -test_that("match_taxa works for empty lineage vectors", { - expect_equal( - match_taxa( - character(), - c("Firmicutes", "Bacteroidetes", "Proteobacteria")), - integer()) -}) - -test_that("match_taxa works for empty taxa vectors", { - expect_equal( - match_taxa( - c("Bacteroidetes; hgj", "Bacteria - Firmicutes", "kgj", "jasfdljh"), - character()), - as.character(c(NA, NA, NA, NA))) -}) - -test_that("match_taxa gives a warning if more than one taxon is matched", { - expect_warning(match_taxa( - c("Bacteroidetes hfg", "Firmicutes"), - c("Bacteroidetes", "Bacteroidetes hfg"))) -}) - -test_that("first_true_index works for multiple TRUE values", { - expect_equal(first_true_idx(c(FALSE, TRUE, TRUE)), 2) -}) - -test_that("first_true_index returns NA if there are no TRUE values", { - expect_equal(first_true_idx(c(FALSE, FALSE, FALSE)), NA_integer_) -}) +gram_stain_db <- data.frame( + taxon = c( + "Actinobacteria", "Bacteroidetes", "Firmicutes", + "Negativicutes", "Proteobacteria"), + rank = c("Phylum", "Phylum", "Phylum", "Class", "Phylum"), + value = c( + "Gram-positive", "Gram-negative", "Gram-positive", + "Gram-negative", "Gram-negative"), + stringsAsFactors = FALSE) + +vanco_db <- data.frame( + taxon = c( + "Lactobacillus", "Enterococcus flavescens", "Lactobacillus delbrueckii", + "Lactobacillus lactis", "Lactobacillus casei"), + rank = c("Genus", "Species", "Species", "Species", "Species"), + value = c( + "resistant", "resistant", "susceptible", "susceptible", "resistant"), + antibiotic = "vancomycin", + stringsAsFactors = FALSE) + +tetra_db <- data.frame( + taxon = c("Escherichia coli", "Enterococcus faecalis", "Klebsiella"), + rank = c("Species", "Species", "Genus"), + value = c("resistant", "resistant", "susceptible"), + antibiotic = "tetracycline", + stringsAsFactors = FALSE) + +test_that("what_antibiotic works for vancomycin data", { + expect_equal( + what_antibiotic( + c("Enterococcus faecalis", + "Lactobacillus", + "Lactobacillus delbrueckii"), + "vancomycin", db = vanco_db), + c(NA, "resistant", "susceptible")) +}) + +test_that("what_antibiotic works for tetracycline data", { + expect_equal( + what_antibiotic( + c("Enterococcus faecalis", + "Lactobacillus", + "Lactobacillus delbrueckii"), + "tetracycline", db = tetra_db), + c("resistant", NA, NA)) +}) + +test_that("what_antibiotic works for multi-abx data", { + mixed_db <- rbind(vanco_db, tetra_db) + expect_equal( + what_antibiotic( + c("Enterococcus faecalis", + "Lactobacillus", + "Lactobacillus delbrueckii"), + "vancomycin", db = mixed_db), + c(NA, "resistant", "susceptible")) + expect_equal( + what_antibiotic( + c("Enterococcus faecalis", + "Lactobacillus", + "Lactobacillus delbrueckii"), + "tetracycline", db = mixed_db), + c("resistant", NA, NA)) +}) + +test_that("what_phenotype works for normal input", { + pheno_db <- gram_stain_db + colnames(pheno_db)[3] <- "gram_stain" + + expect_equal( + what_phenotype( + c("Bacteroidetes", "Firmicutes", "Firmicutes Negativicutes"), + "gram_stain", + pheno_db), + c("Gram-negative", "Gram-positive", "Gram-negative")) +}) + +test_that("match_annotation works for normal input", { + # For the lineage "Firmicutes Negativicutes", the phenotype value for + # Negativicutes (Gram-negative) should override the value for Firmicutes + # (Gram-positive) + expect_equal( + match_annotation( + c("Bacteroidetes", "Firmicutes", "Firmicutes Negativicutes"), + gram_stain_db), + c("Gram-negative", "Gram-positive", "Gram-negative")) +}) + +test_that("match_annotation works for lineage of length 1", { + expect_equal( + match_annotation("Bacteroidetes", gram_stain_db), + "Gram-negative") +}) + +test_that("match_annotation works for empty lineage vector", { + expect_equal(match_annotation(character(), gram_stain_db), character()) +}) + +test_that("match_annotation works for database of length 1", { + expect_equal( + match_annotation( + c("Bacteroidetes", "Firmicutes", "Firmicutes Negativicutes"), + gram_stain_db[2,]), + c("Gram-negative", NA, NA)) +}) + +test_that("match_annotation works for empty database", { + expect_equal( + match_annotation( + c("Bacteroidetes", "Firmicutes", "Firmicutes Negativicutes"), + gram_stain_db[integer(),]), + as.character(c(NA, NA, NA))) +}) + +test_that("first_non_na_value works for multiple non-NA values", { + expect_equal(first_non_na_value(c(NA, NA, "a", NA, "b", NA)), "a") +}) + +test_that("first_non_na_value returns NA if all values are NA", { + na_chars <- as.character(c(NA, NA, NA, NA)) + expect_equal(first_non_na_value(na_chars), NA_character_) +}) + +test_that("match_taxa works for normal input", { + expect_equal( + match_taxa( + c("Bacteroidetes; hgj", "Bacteria - Firmicutes", "kgj", "jasfdljh"), + c("Firmicutes", "Bacteroidetes", "Proteobacteria")), + c(2, 1, NA, NA)) +}) + +test_that("match_taxa works for taxa with prefixes", { + prefix_lineage <- c( + "p__Bacteroidetes; hgj", + "k__Bacteria - p__Firmicutes", + "g__kgj", + "s__jasfdljh") + taxa <- c("Firmicutes", "Bacteroidetes", "Proteobacteria") + expect_equal( + match_taxa(prefix_lineage, taxa), + c(2, 1, NA, NA)) +}) + +test_that("match_taxa works for species names", { + species_lineage <- c( + "Bacteroidetes - Bacteroides vulgatus", + "Enterobacteriaceae; Escherichia; Escherichia coli", + "kgj vulgatus", + "Bacteroidetes - Bacteroides") + species_taxa <- c( + "Escherichia coli", + "Bacteroides vulgatus") + expect_equal( + match_taxa(species_lineage, species_taxa), + c(2, 1, NA, NA)) +}) + +test_that("match_taxa works for lineage vectors of length 1", { + expect_equal( + match_taxa( + "Bacteroidetes; hgj", + c("Firmicutes", "Bacteroidetes", "Proteobacteria")), + 2) +}) + +test_that("match_taxa works for taxa vectors of length 1", { + expect_equal( + match_taxa( + c("Bacteroidetes; hgj", "Bacteria - Firmicutes", "kgj", "jasfdljh"), + "Firmicutes"), + c(NA, 1, NA, NA)) +}) + +test_that("match_taxa works for empty lineage vectors", { + expect_equal( + match_taxa( + character(), + c("Firmicutes", "Bacteroidetes", "Proteobacteria")), + integer()) +}) + +test_that("match_taxa works for empty taxa vectors", { + expect_equal( + match_taxa( + c("Bacteroidetes; hgj", "Bacteria - Firmicutes", "kgj", "jasfdljh"), + character()), + as.character(c(NA, NA, NA, NA))) +}) + +test_that("match_taxa gives a warning if more than one taxon is matched", { + expect_warning(match_taxa( + c("Bacteroidetes hfg", "Firmicutes"), + c("Bacteroidetes", "Bacteroidetes hfg"))) +}) + +test_that("first_true_index works for multiple TRUE values", { + expect_equal(first_true_idx(c(FALSE, TRUE, TRUE)), 2) +}) + +test_that("first_true_index returns NA if there are no TRUE values", { + expect_equal(first_true_idx(c(FALSE, FALSE, FALSE)), NA_integer_) +}) From 025ea3731cea9faaa39063171ccadf080c148105 Mon Sep 17 00:00:00 2001 From: Kyle Bittinger Date: Wed, 1 Apr 2026 21:53:43 -0400 Subject: [PATCH 07/17] Add internal functions to begin matching taxa with synonyms --- R/what.R | 24 ++++++++++++++++++++++++ tests/testthat/test-match.R | 33 +++++++++++++++++++++++++++++++++ 2 files changed, 57 insertions(+) diff --git a/R/what.R b/R/what.R index 11b350e..9d43960 100644 --- a/R/what.R +++ b/R/what.R @@ -160,3 +160,27 @@ first_true_idx <- function (x) { NA_integer_ } } + +split_lineage_noranks <- function(lineage, pattern = "(; ?)|( - )") { + strsplit(lineage, split = pattern, perl = TRUE) +} + +clean_taxa <- function(taxa) { + # Remove rank prefix + taxa <- sub("[kpcofgsx]__", "", taxa) + # Remove brackets from genus names + taxa <- gsub("\\[(\\w+)\\]", "\\1", taxa) + # Remove leading and trailing whitespace + taxa <- trimws(taxa) + taxa +} + +resolve_taxa <- function(name, synonyms = taxon_synonyms) { + synonym_idx <- match(tolower(name), tolower(synonyms$name)) + cat(synonym_idx) + ifelse( + !is.na(synonym_idx), + synonyms$correct_name[synonym_idx], + name + ) +} diff --git a/tests/testthat/test-match.R b/tests/testthat/test-match.R index 0cf28a1..3a66c91 100644 --- a/tests/testthat/test-match.R +++ b/tests/testthat/test-match.R @@ -200,3 +200,36 @@ test_that("first_true_index works for multiple TRUE values", { test_that("first_true_index returns NA if there are no TRUE values", { expect_equal(first_true_idx(c(FALSE, FALSE, FALSE)), NA_integer_) }) + +test_that("resolve_taxa gives correct taxon name", { + syn <- list( + name = c("Bacter vulgatus", "Firmicutes"), + rank = c("species", "phylum"), + correct_name = c("P vulgatus", "Bacillo") + ) + expect_equal( + resolve_taxa(c("Bacter vulgatus", "Firmicutes", "Staph"), synonyms = syn), + c("P vulgatus", "Bacillo", "Staph") + ) +}) + +test_that("clean_taxa removes rank prefixes", { + expect_equal(clean_taxa("g__Bacteroides"), "Bacteroides") +}) + +test_that("clean_taxa removes square brackets", { + expect_equal(clean_taxa("[Ruminococcus] gnavus"), "Ruminococcus gnavus") +}) + +test_that("clean_taxa removes leading and trailing whitespace", { + expect_equal(clean_taxa(" A bc "), "A bc") +}) + +test_that("split_lineage_noranks splits on semicolon", { + expect_equal(split_lineage_noranks("A B; C"), list(c("A B", "C"))) + expect_equal(split_lineage_noranks("A B;C"), list(c("A B", "C"))) +}) + +test_that("split_lineage_noranks splits on hyphen", { + expect_equal(split_lineage_noranks("A - B C"), list(c("A", "B C"))) +}) From 8fb9ff41f3a3b573406c99da0097b544c59c4607 Mon Sep 17 00:00:00 2001 From: Kyle Bittinger Date: Thu, 2 Apr 2026 06:48:16 -0400 Subject: [PATCH 08/17] Remove print statement in resolve_taxa --- R/what.R | 1 - 1 file changed, 1 deletion(-) diff --git a/R/what.R b/R/what.R index 9d43960..1451156 100644 --- a/R/what.R +++ b/R/what.R @@ -177,7 +177,6 @@ clean_taxa <- function(taxa) { resolve_taxa <- function(name, synonyms = taxon_synonyms) { synonym_idx <- match(tolower(name), tolower(synonyms$name)) - cat(synonym_idx) ifelse( !is.na(synonym_idx), synonyms$correct_name[synonym_idx], From 5cf9bf17b1502baca075419255bbcf823665335b Mon Sep 17 00:00:00 2001 From: Kyle Bittinger Date: Thu, 2 Apr 2026 09:19:45 -0400 Subject: [PATCH 09/17] Add function to match taxa with pre-split lineage vectors --- R/what.R | 41 +++++++++++++++++++++++++++++++++++++ tests/testthat/test-match.R | 25 ++++++++++++++++++++++ 2 files changed, 66 insertions(+) diff --git a/R/what.R b/R/what.R index 1451156..d3b380a 100644 --- a/R/what.R +++ b/R/what.R @@ -183,3 +183,44 @@ resolve_taxa <- function(name, synonyms = taxon_synonyms) { name ) } + +match_split_lineage_taxa <- function(lineage_vectors, taxa) { + # Convert to lowercase for case-insensitive matching + lineage_vectors_lc <- lapply(lineage_vectors, tolower) + taxa_lc <- tolower(taxa) + taxa_match_idxs <- lapply(lineage_vectors_lc, match, table = taxa_lc) + # If multiple elements in the lineage match to a taxon, we issue a warning. + is_multimatch <- vapply(taxa_match_idxs, function(x) sum(!is.na(x)) > 1, FUN.VALUE = TRUE) + if (any(is_multimatch)) { + warn_multimatch( + lineage_vectors[is_multimatch], + taxa_match_idxs[is_multimatch], + taxa + ) + } + # If multiple taxa are matched for a single lineage, we take the first + # (highest-ranking) taxon match + first_taxa_matches <- vapply(taxa_match_idxs, first_non_na_value, FUN.VALUE = 1) + first_taxa_matches +} + +warn_multimatch <- function (multimatch_lineages, multimatch_idxs, taxa) { + lineage_toprint <- lapply(multimatch_lineages, paste, collapse = "; ") + + multimatch_idxs <- lapply(multimatch_idxs, function (x) x[!is.na(x)]) + multimatch_taxa_names <- lapply(multimatch_idxs, function (x) taxa[x]) + taxa_toprint <- lapply(multimatch_taxa_names, paste, collapse = ", ") + + message_details <- paste( + "Lineage", + lineage_toprint, + "matches multiple taxa of the same rank:", + taxa_toprint, + collapse = "\n") + message <- paste( + "Multiple taxa matched for one or more lineages:", + message_details, + collapse = "\n" + ) + warning(message) +} diff --git a/tests/testthat/test-match.R b/tests/testthat/test-match.R index 3a66c91..258ecd5 100644 --- a/tests/testthat/test-match.R +++ b/tests/testthat/test-match.R @@ -233,3 +233,28 @@ test_that("split_lineage_noranks splits on semicolon", { test_that("split_lineage_noranks splits on hyphen", { expect_equal(split_lineage_noranks("A - B C"), list(c("A", "B C"))) }) + +test_that("match_split_lineage_taxa returns first match in lineage", { + lineage_xs <- list( + c("C d", "Aa", "nm"), + c("C d", "Bc", "Dc") + ) + expect_equal( + match_split_lineage_taxa(lineage_xs, c("Oo", "Aa", "f f")), + c(2, NA) + ) +}) + +test_that("match_split_lineage_taxa works for one lineage", { + expect_equal( + match_split_lineage_taxa(list(c("Aa", "f f")), c("Oo", "Aa")), + 2 + ) +}) + +test_that("match_split_lineage_taxa warns on multi-match", { + expect_warning( + match_split_lineage_taxa(list(c("Aa", "f f")), c("Oo", "Aa", "f f")), + "Multiple taxa" + ) +}) From d7661b207a477cedc99a1c1a697b5597d19b9d36 Mon Sep 17 00:00:00 2001 From: Kyle Bittinger Date: Thu, 2 Apr 2026 13:00:43 -0400 Subject: [PATCH 10/17] Add new match_annotation function with synonyms --- R/what.R | 41 +++++++++++++++++++++++++++++++++++++ tests/testthat/test-match.R | 37 +++++++++++++++++++++++++++++++++ 2 files changed, 78 insertions(+) diff --git a/R/what.R b/R/what.R index d3b380a..33cc617 100644 --- a/R/what.R +++ b/R/what.R @@ -176,6 +176,9 @@ clean_taxa <- function(taxa) { } resolve_taxa <- function(name, synonyms = taxon_synonyms) { + if (is.null(synonyms)) { + return(name) + } synonym_idx <- match(tolower(name), tolower(synonyms$name)) ifelse( !is.na(synonym_idx), @@ -224,3 +227,41 @@ warn_multimatch <- function (multimatch_lineages, multimatch_idxs, taxa) { ) warning(message) } + +prepare_lineage <- function (x, synonyms = taxon_synonyms) { + x |> + split_lineage_noranks() |> + lapply(clean_taxa) |> + lapply(resolve_taxa, synonyms) +} + +#' Determine the annotation values for each lineage +#' +#' @param lineage A vector of taxonomic assignments or lineages +#' @param db A data frame with columns named "taxon", "rank", and "value" +#' @return A vector of assigned values +match_annotation_split <- function (lineage, db, synonyms = taxon_synonyms) { + lineage_vectors <- prepare_lineage(lineage, synonyms = synonyms) + get_rank_specific_db <- function (r) { + rank_is_r <- db[["rank"]] %in% r + db[rank_is_r, ] + } + db_ranks <- lapply(rev(taxonomic_ranks), get_rank_specific_db) + names(db_ranks) <- rev(taxonomic_ranks) + + get_values_by_rank <- function (rank_specific_db) { + taxa_idx <- match_split_lineage_taxa(lineage_vectors, rank_specific_db[["taxon"]]) + rank_specific_db[["value"]][taxa_idx] + } + values_by_rank <- vapply( + db_ranks, + get_values_by_rank, + rep("a", length(lineage_vectors))) + + if (length(lineage_vectors) == 1) { + assigned_values <- first_non_na_value(values_by_rank) + } else { + assigned_values <- apply(values_by_rank, 1, first_non_na_value) + } + assigned_values +} diff --git a/tests/testthat/test-match.R b/tests/testthat/test-match.R index 258ecd5..cdcb5f6 100644 --- a/tests/testthat/test-match.R +++ b/tests/testthat/test-match.R @@ -258,3 +258,40 @@ test_that("match_split_lineage_taxa warns on multi-match", { "Multiple taxa" ) }) + +test_that("match_annotation_split works for normal input", { + # For the lineage "Firmicutes Negativicutes", the phenotype value for + # Negativicutes (Gram-negative) should override the value for Firmicutes + # (Gram-positive) + expect_equal( + match_annotation_split( + c("Bacteroidetes", "Firmicutes", "Firmicutes - Negativicutes"), + gram_stain_db, synonyms = NULL), + c("Gram-negative", "Gram-positive", "Gram-negative")) +}) + +test_that("match_annotation_split works for lineage of length 1", { + expect_equal( + match_annotation_split("Bacteroidetes", gram_stain_db, synonyms = NULL), + "Gram-negative") +}) + +test_that("match_annotation_split works for empty lineage vector", { + expect_equal(match_annotation_split(character(), gram_stain_db, synonyms = NULL), character()) +}) + +test_that("match_annotation_split works for database of length 1", { + expect_equal( + match_annotation_split( + c("Bacteroidetes", "Firmicutes", "Firmicutes Negativicutes"), + gram_stain_db[2,], synonyms = NULL), + c("Gram-negative", NA, NA)) +}) + +test_that("match_annotation_split works for empty database", { + expect_equal( + match_annotation_split( + c("Bacteroidetes", "Firmicutes", "Firmicutes Negativicutes"), + gram_stain_db[integer(),], synonyms = NULL), + as.character(c(NA, NA, NA))) +}) From 0403d44f97a0b91ca625a2dd7d280556ecdaae55 Mon Sep 17 00:00:00 2001 From: Kyle Bittinger Date: Thu, 2 Apr 2026 15:31:03 -0400 Subject: [PATCH 11/17] Replace match_annotation function with one including synonyms --- R/what.R | 53 +++++++-------------------- tests/testthat/test-match.R | 73 +++++++++---------------------------- 2 files changed, 31 insertions(+), 95 deletions(-) diff --git a/R/what.R b/R/what.R index 33cc617..688db65 100644 --- a/R/what.R +++ b/R/what.R @@ -24,11 +24,12 @@ #' @export what_antibiotic <- function (lineage, antibiotic, - db = taxon_susceptibility) { + db = taxon_susceptibility, + synonyms = taxon_synonyms) { is_relevant <- db$antibiotic %in% antibiotic db <- db[is_relevant, c("taxon", "rank", "value")] - susceptibility_values <- match_annotation(lineage, db) + susceptibility_values <- match_annotation(lineage, db, synonyms) susceptibility_values } @@ -57,38 +58,41 @@ what_antibiotic <- function (lineage, #' @export what_phenotype <- function (lineage, phenotype, - db = taxon_phenotypes) { + db = taxon_phenotypes, + synonyms = taxon_synonyms) { db <- db[, c("taxon", "rank", phenotype)] # match_annotation() requires a column named "value" colnames(db)[3] <- "value" - match_annotation(lineage, db) + match_annotation(lineage, db, synonyms) } #' Determine the annotation values for each lineage #' #' @param lineage A vector of taxonomic assignments or lineages #' @param db A data frame with columns named "taxon", "rank", and "value" +#' @param synonyms A data frame of with columns "name" and "correct_name" #' @return A vector of assigned values #' #' @export -match_annotation <- function (lineage, db) { +match_annotation <- function (lineage, db, synonyms = NULL) { + lineage_vectors <- prepare_lineage(lineage, synonyms = synonyms) get_rank_specific_db <- function (r) { rank_is_r <- db[["rank"]] %in% r - db[rank_is_r,] + db[rank_is_r, ] } db_ranks <- lapply(rev(taxonomic_ranks), get_rank_specific_db) names(db_ranks) <- rev(taxonomic_ranks) get_values_by_rank <- function (rank_specific_db) { - taxa_idx <- match_taxa(lineage, rank_specific_db[["taxon"]]) + taxa_idx <- match_split_lineage_taxa(lineage_vectors, rank_specific_db[["taxon"]]) rank_specific_db[["value"]][taxa_idx] } values_by_rank <- vapply( db_ranks, get_values_by_rank, - rep("a", length(lineage))) + rep("a", length(lineage_vectors))) - if (length(lineage) == 1) { + if (length(lineage_vectors) == 1) { assigned_values <- first_non_na_value(values_by_rank) } else { assigned_values <- apply(values_by_rank, 1, first_non_na_value) @@ -234,34 +238,3 @@ prepare_lineage <- function (x, synonyms = taxon_synonyms) { lapply(clean_taxa) |> lapply(resolve_taxa, synonyms) } - -#' Determine the annotation values for each lineage -#' -#' @param lineage A vector of taxonomic assignments or lineages -#' @param db A data frame with columns named "taxon", "rank", and "value" -#' @return A vector of assigned values -match_annotation_split <- function (lineage, db, synonyms = taxon_synonyms) { - lineage_vectors <- prepare_lineage(lineage, synonyms = synonyms) - get_rank_specific_db <- function (r) { - rank_is_r <- db[["rank"]] %in% r - db[rank_is_r, ] - } - db_ranks <- lapply(rev(taxonomic_ranks), get_rank_specific_db) - names(db_ranks) <- rev(taxonomic_ranks) - - get_values_by_rank <- function (rank_specific_db) { - taxa_idx <- match_split_lineage_taxa(lineage_vectors, rank_specific_db[["taxon"]]) - rank_specific_db[["value"]][taxa_idx] - } - values_by_rank <- vapply( - db_ranks, - get_values_by_rank, - rep("a", length(lineage_vectors))) - - if (length(lineage_vectors) == 1) { - assigned_values <- first_non_na_value(values_by_rank) - } else { - assigned_values <- apply(values_by_rank, 1, first_non_na_value) - } - assigned_values -} diff --git a/tests/testthat/test-match.R b/tests/testthat/test-match.R index cdcb5f6..e49b784 100644 --- a/tests/testthat/test-match.R +++ b/tests/testthat/test-match.R @@ -31,7 +31,7 @@ test_that("what_antibiotic works for vancomycin data", { c("Enterococcus faecalis", "Lactobacillus", "Lactobacillus delbrueckii"), - "vancomycin", db = vanco_db), + "vancomycin", db = vanco_db, synonyms = NULL), c(NA, "resistant", "susceptible")) }) @@ -41,7 +41,7 @@ test_that("what_antibiotic works for tetracycline data", { c("Enterococcus faecalis", "Lactobacillus", "Lactobacillus delbrueckii"), - "tetracycline", db = tetra_db), + "tetracycline", db = tetra_db, synonyms = NULL), c("resistant", NA, NA)) }) @@ -52,14 +52,14 @@ test_that("what_antibiotic works for multi-abx data", { c("Enterococcus faecalis", "Lactobacillus", "Lactobacillus delbrueckii"), - "vancomycin", db = mixed_db), + "vancomycin", db = mixed_db, synonyms = NULL), c(NA, "resistant", "susceptible")) expect_equal( what_antibiotic( c("Enterococcus faecalis", "Lactobacillus", "Lactobacillus delbrueckii"), - "tetracycline", db = mixed_db), + "tetracycline", db = mixed_db, synonyms = NULL), c("resistant", NA, NA)) }) @@ -69,49 +69,12 @@ test_that("what_phenotype works for normal input", { expect_equal( what_phenotype( - c("Bacteroidetes", "Firmicutes", "Firmicutes Negativicutes"), + c("Bacteroidetes", "Firmicutes", "Firmicutes - Negativicutes"), "gram_stain", - pheno_db), - c("Gram-negative", "Gram-positive", "Gram-negative")) -}) - -test_that("match_annotation works for normal input", { - # For the lineage "Firmicutes Negativicutes", the phenotype value for - # Negativicutes (Gram-negative) should override the value for Firmicutes - # (Gram-positive) - expect_equal( - match_annotation( - c("Bacteroidetes", "Firmicutes", "Firmicutes Negativicutes"), - gram_stain_db), + db = pheno_db, synonyms = NULL), c("Gram-negative", "Gram-positive", "Gram-negative")) }) -test_that("match_annotation works for lineage of length 1", { - expect_equal( - match_annotation("Bacteroidetes", gram_stain_db), - "Gram-negative") -}) - -test_that("match_annotation works for empty lineage vector", { - expect_equal(match_annotation(character(), gram_stain_db), character()) -}) - -test_that("match_annotation works for database of length 1", { - expect_equal( - match_annotation( - c("Bacteroidetes", "Firmicutes", "Firmicutes Negativicutes"), - gram_stain_db[2,]), - c("Gram-negative", NA, NA)) -}) - -test_that("match_annotation works for empty database", { - expect_equal( - match_annotation( - c("Bacteroidetes", "Firmicutes", "Firmicutes Negativicutes"), - gram_stain_db[integer(),]), - as.character(c(NA, NA, NA))) -}) - test_that("first_non_na_value works for multiple non-NA values", { expect_equal(first_non_na_value(c(NA, NA, "a", NA, "b", NA)), "a") }) @@ -259,39 +222,39 @@ test_that("match_split_lineage_taxa warns on multi-match", { ) }) -test_that("match_annotation_split works for normal input", { +test_that("match_annotation works for normal input", { # For the lineage "Firmicutes Negativicutes", the phenotype value for # Negativicutes (Gram-negative) should override the value for Firmicutes # (Gram-positive) expect_equal( - match_annotation_split( + match_annotation( c("Bacteroidetes", "Firmicutes", "Firmicutes - Negativicutes"), gram_stain_db, synonyms = NULL), c("Gram-negative", "Gram-positive", "Gram-negative")) }) -test_that("match_annotation_split works for lineage of length 1", { +test_that("match_annotation works for lineage of length 1", { expect_equal( - match_annotation_split("Bacteroidetes", gram_stain_db, synonyms = NULL), + match_annotation("Bacteroidetes", gram_stain_db, synonyms = NULL), "Gram-negative") }) -test_that("match_annotation_split works for empty lineage vector", { - expect_equal(match_annotation_split(character(), gram_stain_db, synonyms = NULL), character()) +test_that("match_annotation works for empty lineage vector", { + expect_equal(match_annotation(character(), gram_stain_db, synonyms = NULL), character()) }) -test_that("match_annotation_split works for database of length 1", { +test_that("match_annotation works for database of length 1", { expect_equal( - match_annotation_split( - c("Bacteroidetes", "Firmicutes", "Firmicutes Negativicutes"), + match_annotation( + c("Bacteroidetes", "Firmicutes", "Firmicutes - Negativicutes"), gram_stain_db[2,], synonyms = NULL), c("Gram-negative", NA, NA)) }) -test_that("match_annotation_split works for empty database", { +test_that("match_annotation works for empty database", { expect_equal( - match_annotation_split( - c("Bacteroidetes", "Firmicutes", "Firmicutes Negativicutes"), + match_annotation( + c("Bacteroidetes", "Firmicutes", "Firmicutes - Negativicutes"), gram_stain_db[integer(),], synonyms = NULL), as.character(c(NA, NA, NA))) }) From d863723f11116427f44fdc485d75252fba76f1e2 Mon Sep 17 00:00:00 2001 From: Kyle Bittinger Date: Thu, 2 Apr 2026 16:48:19 -0400 Subject: [PATCH 12/17] Update docs --- man/match_annotation.Rd | 4 +++- man/what_antibiotic.Rd | 7 ++++++- man/what_phenotype.Rd | 7 ++++++- 3 files changed, 15 insertions(+), 3 deletions(-) diff --git a/man/match_annotation.Rd b/man/match_annotation.Rd index 36f4894..79db983 100644 --- a/man/match_annotation.Rd +++ b/man/match_annotation.Rd @@ -4,12 +4,14 @@ \alias{match_annotation} \title{Determine the annotation values for each lineage} \usage{ -match_annotation(lineage, db) +match_annotation(lineage, db, synonyms = NULL) } \arguments{ \item{lineage}{A vector of taxonomic assignments or lineages} \item{db}{A data frame with columns named "taxon", "rank", and "value"} + +\item{synonyms}{A data frame of with columns "name" and "correct_name"} } \value{ A vector of assigned values diff --git a/man/what_antibiotic.Rd b/man/what_antibiotic.Rd index 262e957..16649c4 100644 --- a/man/what_antibiotic.Rd +++ b/man/what_antibiotic.Rd @@ -4,7 +4,12 @@ \alias{what_antibiotic} \title{Fetch susceptibility values for a given lineage and antibiotic} \usage{ -what_antibiotic(lineage, antibiotic, db = taxon_susceptibility) +what_antibiotic( + lineage, + antibiotic, + db = taxon_susceptibility, + synonyms = taxon_synonyms +) } \arguments{ \item{lineage}{A character vector of taxonomic assignments or lineages} diff --git a/man/what_phenotype.Rd b/man/what_phenotype.Rd index f2a19bc..50b79b2 100644 --- a/man/what_phenotype.Rd +++ b/man/what_phenotype.Rd @@ -4,7 +4,12 @@ \alias{what_phenotype} \title{Fetch the phenotype values for a given lineage and phenotype} \usage{ -what_phenotype(lineage, phenotype, db = taxon_phenotypes) +what_phenotype( + lineage, + phenotype, + db = taxon_phenotypes, + synonyms = taxon_synonyms +) } \arguments{ \item{lineage}{A character vector of taxonomic assignments or lineages} From 6312dbc2c9bd1280e69a996245ab7faa50e8e1ce Mon Sep 17 00:00:00 2001 From: Kyle Bittinger Date: Thu, 2 Apr 2026 17:15:39 -0400 Subject: [PATCH 13/17] Add Rmarkdown version of README --- .Rbuildignore | 1 + README.Rmd | 62 +++++++++++++++++++++++++++++ README.md | 108 ++++++++++++++++++++++++++++++-------------------- 3 files changed, 129 insertions(+), 42 deletions(-) create mode 100644 README.Rmd diff --git a/.Rbuildignore b/.Rbuildignore index a092039..dad2bba 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -4,3 +4,4 @@ ^.*\.Rproj$ ^\.Rproj\.user$ ^data-raw$ +^README\.Rmd$ diff --git a/README.Rmd b/README.Rmd new file mode 100644 index 0000000..ff72f2d --- /dev/null +++ b/README.Rmd @@ -0,0 +1,62 @@ +--- +output: github_document +--- + + + +```{r, include = FALSE} +knitr::opts_chunk$set( + collapse = TRUE, + comment = "#>", + fig.path = "man/figures/README-", + out.width = "100%" +) +``` + +# whatbacteria + + + [![R-CMD-check](https://github.com/PennChopMicrobiomeProgram/whatbacteria/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/PennChopMicrobiomeProgram/whatbacteria/actions/workflows/R-CMD-check.yaml) + + +Taxon phenotype and susceptibility databases for the mirix package. + +## Installation + +You can install the development version of whatbacteria from +[GitHub](https://github.com/) with: + +``` r +# install.packages("pak") +pak::pak("PennChopMicrobiomeProgram/whatbacteria") +``` + +## Usage + +```{r} +library(whatbacteria) +``` + + +To access the databases directly: + +```{r} +head(taxon_phenotypes) +head(taxon_susceptibility) +``` + +To get a particular lineage's susceptibilities: + +```{r} +what_antibiotic( + c("Enterococcus faecalis", "Lactobacillus", "Lactobacillus delbrueckii"), + "vancomycin", synonyms = NULL) +``` + +To get a particular lineage's phenotypes: + +```{r} +what_phenotype( + c("Bacteroidetes", "Firmicutes", "Firmicutes; Negativicutes"), + "gram_stain", synonyms = NULL) +``` \ No newline at end of file diff --git a/README.md b/README.md index c776fe1..da4724c 100644 --- a/README.md +++ b/README.md @@ -1,42 +1,66 @@ - -# whatbacteria - - - [![R-CMD-check](https://github.com/PennChopMicrobiomeProgram/whatbacteria/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/PennChopMicrobiomeProgram/whatbacteria/actions/workflows/R-CMD-check.yaml) - - -Taxon phenotype and susceptibility databases for the mirix package. - -## Installation - -You can install the development version of whatbacteria from [GitHub](https://github.com/) with: - -``` r -# install.packages("devtools") -devtools::install_github("PennChopMicrobiomeProgram/whatbacteria") -``` - -## Usage - -To access the databases directly: - -``` r -taxon_phenotypes -taxon_susceptibility -``` - -To get a particular lineage's susceptibilities: - -``` r -what_antibiotic( - c("Enterococcus faecalis", "Lactobacillus", "Lactobacillus delbrueckii"), - "vancomycin") -``` - -To get a particular lineage's phenotypes: - -``` r -what_phenotype( - c("Bacteroidetes", "Firmicutes", "Firmicutes; Negativicutes"), - "gram_stain") -``` \ No newline at end of file + + + +# whatbacteria + + + +[![R-CMD-check](https://github.com/PennChopMicrobiomeProgram/whatbacteria/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/PennChopMicrobiomeProgram/whatbacteria/actions/workflows/R-CMD-check.yaml) + + +Taxon phenotype and susceptibility databases for the mirix package. + +## Installation + +You can install the development version of whatbacteria from +[GitHub](https://github.com/) with: + +``` r +# install.packages("pak") +pak::pak("PennChopMicrobiomeProgram/whatbacteria") +``` + +## Usage + +``` r +library(whatbacteria) +``` + +To access the databases directly: + +``` r +head(taxon_phenotypes) +#> taxon rank aerobic_status gram_stain doi +#> 1 Actinobacteria Phylum Gram-positive 10.1128/MMBR.00019-15 +#> 2 Bacteroidetes Phylum Gram-negative +#> 3 Firmicutes Phylum Gram-positive 10.1099/00207713-28-1-1 +#> 4 Proteobacteria Phylum Gram-negative +#> 5 Negativicutes Class Gram-negative 10.4056/sigs.2981345 +#> 6 Clostridia Class obligate anaerobe Gram-positive +head(taxon_susceptibility) +#> taxon rank antibiotic value doi +#> 1 Lactobacillus Genus vancomycin resistant 10.1128/AEM.01738-18 +#> 2 Leuconostoc Genus vancomycin resistant 10.1053/jhin.1998.0605 +#> 3 Pediococcus Genus vancomycin resistant 10.1053/jhin.1998.0605 +#> 4 Erysipelothrix Genus vancomycin resistant 10.1053/jhin.1998.0605 +#> 5 Mycoplasma Genus vancomycin resistant 10.1038/nrmicro1464 +#> 6 Faecalibacterium Genus vancomycin susceptible 10.3389/fmicb.2017.01226 +``` + +To get a particular lineage’s susceptibilities: + +``` r +what_antibiotic( + c("Enterococcus faecalis", "Lactobacillus", "Lactobacillus delbrueckii"), + "vancomycin", synonyms = NULL) +#> [1] NA "resistant" "susceptible" +``` + +To get a particular lineage’s phenotypes: + +``` r +what_phenotype( + c("Bacteroidetes", "Firmicutes", "Firmicutes; Negativicutes"), + "gram_stain", synonyms = NULL) +#> [1] "Gram-negative" "Gram-positive" "Gram-negative" +``` From da85460d996484633e362bcf0be1b0741866987c Mon Sep 17 00:00:00 2001 From: Kyle Bittinger Date: Thu, 2 Apr 2026 17:45:34 -0400 Subject: [PATCH 14/17] Update taxon tables with new names --- data-raw/taxon_phenotypes.Rmd | 78 ++++++++++++++++++++++++++++++++-- data/taxon_phenotypes.rda | Bin 10318 -> 10380 bytes 2 files changed, 75 insertions(+), 3 deletions(-) diff --git a/data-raw/taxon_phenotypes.Rmd b/data-raw/taxon_phenotypes.Rmd index 275ec76..d30a140 100644 --- a/data-raw/taxon_phenotypes.Rmd +++ b/data-raw/taxon_phenotypes.Rmd @@ -93,11 +93,85 @@ phenotype_species %>% phenotype_misc <- read_csv("phenotype_misc.csv", show_col_types = FALSE) ``` +## Update taxa names + +Many names have been updated since the list was first compiled. + +```{r} +updated_phenotype_genus <- phenotype_genus |> + rename(old_taxon = taxon) |> + mutate(updated_taxon = whatbacteria:::resolve_taxa(old_taxon)) |> + select(old_taxon, updated_taxon, everything()) +updated_phenotype_genus_unique <- updated_phenotype_genus |> + group_by(updated_taxon) |> + filter(n() == 1) |> + ungroup() +updated_phenotype_genus_duplicates <- updated_phenotype_genus |> + group_by(updated_taxon) |> + filter(n() > 1) +# If two genera were merged, take the original +# Otherwise, drop both from the table +updated_phenotype_genus_dereplicated <- updated_phenotype_genus_duplicates |> + filter(old_taxon == updated_taxon) |> + ungroup() +updated_phenotype_genus <- bind_rows( + updated_phenotype_genus_unique, + updated_phenotype_genus_dereplicated +) +updated_phenotype_genus |> + filter(updated_taxon != old_taxon) +updated_phenotype_genus <- updated_phenotype_genus |> + select(-old_taxon) |> + rename(taxon = updated_taxon) +``` + +```{r} +updated_phenotype_species <- phenotype_species |> + rename(old_taxon = taxon) |> + mutate(updated_taxon = whatbacteria:::resolve_taxa(old_taxon)) |> + select(old_taxon, updated_taxon, everything()) +updated_phenotype_species_unique <- updated_phenotype_species |> + group_by(updated_taxon) |> + filter(n() == 1) |> + ungroup() +updated_phenotype_species_duplicates <- updated_phenotype_species |> + group_by(updated_taxon) |> + filter(n() > 1) +# If two species were merged, take the original +# Otherwise, drop both from the table +updated_phenotype_species_dereplicated <- updated_phenotype_species_duplicates |> + filter(old_taxon == updated_taxon) |> + ungroup() +updated_phenotype_species <- bind_rows( + updated_phenotype_species_unique, + updated_phenotype_species_dereplicated +) +updated_phenotype_species |> + filter(updated_taxon != old_taxon) +updated_phenotype_species <- updated_phenotype_species |> + select(-old_taxon) |> + rename(taxon = updated_taxon) +``` + +```{r} +updated_phenotype_misc <- phenotype_misc |> + rename(old_taxon = taxon) |> + mutate(updated_taxon = whatbacteria:::resolve_taxa(old_taxon)) |> + select(old_taxon, updated_taxon, everything()) +updated_phenotype_misc |> + filter(updated_taxon != old_taxon) +updated_phenotype_misc <- updated_phenotype_misc |> + select(-old_taxon) |> + rename(taxon = updated_taxon) +``` + + + ## Final check ```{r} taxon_phenotypes <- bind_rows( - phenotype_misc, phenotype_genus, phenotype_species) + updated_phenotype_misc, updated_phenotype_genus, updated_phenotype_species) taxon_phenotypes %>% count(rank) taxon_phenotypes %>% @@ -164,7 +238,6 @@ bind_rows(n_aerobic, n_gram) %>% labs(x = "Number of taxa", y = "", fill = "") + theme_bw() + theme(strip.background = element_blank()) -ggsave("phenotype_counts.png", width = 8, height = 4, dpi = 300) ``` ```{r eval=FALSE} @@ -177,7 +250,6 @@ taxon_phenotypes %>% labs(x = "Number of taxa annotated", y = "") + theme_bw() + theme(legend.position = "none") -ggsave("taxon_counts.png", width = 4, height = 2, dpi = 300) ``` diff --git a/data/taxon_phenotypes.rda b/data/taxon_phenotypes.rda index 8a0cf6d609085969824a6c27f690458dc092d511..b1368b71af5bec1f71c53e4b286234f1162a198f 100644 GIT binary patch literal 10380 zcmV;7D0A0BT4*^jL0KkKSy0>kTmW@4|KR`s|Nrv?|KLCW-@w2B|L{Nn1ONa9;5mNs zeED#)%==(}e;U;y9=H!E82xayD>iNQMNnV1(lfkTsRM#BI!6utleKIgvo z*}a1R2ea>e<@MatEWQD}d3p*Rr(&m6K%-U}mFp*#*h#2_F9CLoh(G-*vU(w?WNWEugdsgp*5>Hr6*157}PNs?2> zp_JN&Lrnkx4FCo}0000DJd#S9r=&FW8kxmt831H35s)!4GGPFd)k!L!iK-9O 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z1t-gAvIpWwcf%BV_{`0=;eAB|KTGfS@lQJa)ziPk{^_RN9?*2H_))C^Wgl5e-k*aq zS$Ot}v11Pm>pWRcoA7%B3^vPoH)II}NZ|;dnwS-9o|A%pjG0yPRad4H2ub^=+~XI{ zOv6Lyn)JUUFAbaOcD%0nv`7=#UP#;*uSV+Hnd#Kp=>$MUI%qYzwG@m|B_M18m?h?J zRD;jUgpwWHkzymWg`ow;0@OCh8fQpNFj(aRstOpN67Tp}=9#sSpq&kG)yd$H?9#=4 zTe9HB=gEY~M}2cMUk7Y>>#Ku>eohR`z!bBgo^+L$K3#2$lRBoinZ47S2h}yDv@VfV zK@k+_Z3rDbakE@GwaEMKT&JEKW~8Chvh^3v8e|3_YcpnJ=_j43*frIs@bzN>`9&h) zf8-{|k(hy*j3 Date: Thu, 2 Apr 2026 18:03:43 -0400 Subject: [PATCH 15/17] Update README with synonyms --- README.Rmd | 4 ++-- README.md | 12 ++++++------ 2 files changed, 8 insertions(+), 8 deletions(-) diff --git a/README.Rmd b/README.Rmd index ff72f2d..3e73c96 100644 --- a/README.Rmd +++ b/README.Rmd @@ -50,7 +50,7 @@ To get a particular lineage's susceptibilities: ```{r} what_antibiotic( c("Enterococcus faecalis", "Lactobacillus", "Lactobacillus delbrueckii"), - "vancomycin", synonyms = NULL) + "vancomycin") ``` To get a particular lineage's phenotypes: @@ -58,5 +58,5 @@ To get a particular lineage's phenotypes: ```{r} what_phenotype( c("Bacteroidetes", "Firmicutes", "Firmicutes; Negativicutes"), - "gram_stain", synonyms = NULL) + "gram_stain") ``` \ No newline at end of file diff --git a/README.md b/README.md index da4724c..5a2a5f0 100644 --- a/README.md +++ b/README.md @@ -31,10 +31,10 @@ To access the databases directly: ``` r head(taxon_phenotypes) #> taxon rank aerobic_status gram_stain doi -#> 1 Actinobacteria Phylum Gram-positive 10.1128/MMBR.00019-15 -#> 2 Bacteroidetes Phylum Gram-negative -#> 3 Firmicutes Phylum Gram-positive 10.1099/00207713-28-1-1 -#> 4 Proteobacteria Phylum Gram-negative +#> 1 Actinomycetota Phylum Gram-positive 10.1128/MMBR.00019-15 +#> 2 Bacteroidota Phylum Gram-negative +#> 3 Bacillota Phylum Gram-positive 10.1099/00207713-28-1-1 +#> 4 Pseudomonadota Phylum Gram-negative #> 5 Negativicutes Class Gram-negative 10.4056/sigs.2981345 #> 6 Clostridia Class obligate anaerobe Gram-positive head(taxon_susceptibility) @@ -52,7 +52,7 @@ To get a particular lineage’s susceptibilities: ``` r what_antibiotic( c("Enterococcus faecalis", "Lactobacillus", "Lactobacillus delbrueckii"), - "vancomycin", synonyms = NULL) + "vancomycin") #> [1] NA "resistant" "susceptible" ``` @@ -61,6 +61,6 @@ To get a particular lineage’s phenotypes: ``` r what_phenotype( c("Bacteroidetes", "Firmicutes", "Firmicutes; Negativicutes"), - "gram_stain", synonyms = NULL) + "gram_stain") #> [1] "Gram-negative" "Gram-positive" "Gram-negative" ``` From b63f7af25ea56f05a342c3e19f39a756c29046eb Mon Sep 17 00:00:00 2001 From: Kyle Bittinger Date: Thu, 2 Apr 2026 18:04:13 -0400 Subject: [PATCH 16/17] Document synonym parameters and make qualified references to package data --- R/what.R | 16 ++++++++++------ man/what_antibiotic.Rd | 7 +++++-- man/what_phenotype.Rd | 7 +++++-- 3 files changed, 20 insertions(+), 10 deletions(-) diff --git a/R/what.R b/R/what.R index 688db65..2f57485 100644 --- a/R/what.R +++ b/R/what.R @@ -4,6 +4,8 @@ #' @param antibiotic The name of the antibiotic or antibiotic class in \code{db} #' @param db A data frame with columns named "taxon", "rank", "antibiotic", #' and "value" +#' @param synonyms A data frame of taxonomic synonyms with columns "name" and +#' "correct_name" #' @return A vector of assigned susceptibility values, which should be either #' "susceptible", "resistant", or \code{NA} #' @details @@ -24,8 +26,8 @@ #' @export what_antibiotic <- function (lineage, antibiotic, - db = taxon_susceptibility, - synonyms = taxon_synonyms) { + db = whatbacteria::taxon_susceptibility, + synonyms = whatbacteria::taxon_synonyms) { is_relevant <- db$antibiotic %in% antibiotic db <- db[is_relevant, c("taxon", "rank", "value")] @@ -40,6 +42,8 @@ what_antibiotic <- function (lineage, #' phenotype of interest #' @param db A data frame with columns named "taxon", "rank", and the column #' name specified in \code{phenotype} +#' @param synonyms A data frame of taxonomic synonyms with columns "name" and +#' "correct_name" #' @return A vector of assigned phenotype values #' @details #' This function operates much like \code{antibiotic_susceptibility}, except @@ -58,8 +62,8 @@ what_antibiotic <- function (lineage, #' @export what_phenotype <- function (lineage, phenotype, - db = taxon_phenotypes, - synonyms = taxon_synonyms) { + db = whatbacteria::taxon_phenotypes, + synonyms = whatbacteria::taxon_synonyms) { db <- db[, c("taxon", "rank", phenotype)] # match_annotation() requires a column named "value" colnames(db)[3] <- "value" @@ -179,7 +183,7 @@ clean_taxa <- function(taxa) { taxa } -resolve_taxa <- function(name, synonyms = taxon_synonyms) { +resolve_taxa <- function(name, synonyms = whatbacteria::taxon_synonyms) { if (is.null(synonyms)) { return(name) } @@ -232,7 +236,7 @@ warn_multimatch <- function (multimatch_lineages, multimatch_idxs, taxa) { warning(message) } -prepare_lineage <- function (x, synonyms = taxon_synonyms) { +prepare_lineage <- function (x, synonyms = whatbacteria::taxon_synonyms) { x |> split_lineage_noranks() |> lapply(clean_taxa) |> diff --git a/man/what_antibiotic.Rd b/man/what_antibiotic.Rd index 16649c4..bfc5335 100644 --- a/man/what_antibiotic.Rd +++ b/man/what_antibiotic.Rd @@ -7,8 +7,8 @@ what_antibiotic( lineage, antibiotic, - db = taxon_susceptibility, - synonyms = taxon_synonyms + db = whatbacteria::taxon_susceptibility, + synonyms = whatbacteria::taxon_synonyms ) } \arguments{ @@ -18,6 +18,9 @@ what_antibiotic( \item{db}{A data frame with columns named "taxon", "rank", "antibiotic", and "value"} + +\item{synonyms}{A data frame of taxonomic synonyms with columns "name" and +"correct_name"} } \value{ A vector of assigned susceptibility values, which should be either diff --git a/man/what_phenotype.Rd b/man/what_phenotype.Rd index 50b79b2..9b953b7 100644 --- a/man/what_phenotype.Rd +++ b/man/what_phenotype.Rd @@ -7,8 +7,8 @@ what_phenotype( lineage, phenotype, - db = taxon_phenotypes, - synonyms = taxon_synonyms + db = whatbacteria::taxon_phenotypes, + synonyms = whatbacteria::taxon_synonyms ) } \arguments{ @@ -19,6 +19,9 @@ phenotype of interest} \item{db}{A data frame with columns named "taxon", "rank", and the column name specified in \code{phenotype}} + +\item{synonyms}{A data frame of taxonomic synonyms with columns "name" and +"correct_name"} } \value{ A vector of assigned phenotype values From df8a2d1d32cc14eba06e152856ea86427ea46bcf Mon Sep 17 00:00:00 2001 From: Kyle Bittinger Date: Thu, 2 Apr 2026 18:11:33 -0400 Subject: [PATCH 17/17] Update version, author, minimum R version in DESCRIPTION --- DESCRIPTION | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index a2b7282..255da21 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: whatbacteria Title: whatbacteria -Version: 0.0.1.0 +Version: 0.2.0.9000 Author: Vincent Tu -Maintainer: Vincent Tu +Maintainer: Kyle Bittinger Description: Taxon phenotype and susceptibility databases for the mirix package. License: GPL-3 Encoding: UTF-8 @@ -13,6 +13,6 @@ Suggests: knitr, rmarkdown, testthat (>= 3.0.0) -Depends: - R (>= 3.5) +Depends: + R (>= 4.1.0) Config/testthat/edition: 3