A file set for a distinct measurement, such as the sequencing of a genomic library generated by an experiment performed on a cell line. A measurement set contains the raw data files generated by the measurement.
| Name | Type | Description | Notes |
|---|---|---|---|
| release_timestamp | str | The date the object was released. | [optional] |
| publication_identifiers | List[str] | The publication identifiers that provide more information about the object. | [optional] |
| documents | List[str] | Documents that provide additional information (not data file). | [optional] |
| lab | str | Lab associated with the submission. | [optional] |
| award | str | Grant associated with the submission. | [optional] |
| accession | str | A unique identifier to be used to reference the object prefixed with PKB. | [optional] |
| alternate_accessions | List[str] | Accessions previously assigned to objects that have been merged with this object. | [optional] |
| collections | List[str] | Some samples are part of particular data collections. | [optional] |
| status | str | The status of the metadata object. | [optional] |
| revoke_detail | str | Explanation of why an object was transitioned to the revoked status. | [optional] |
| schema_version | str | The version of the JSON schema that the server uses to validate the object. | [optional] |
| uuid | str | The unique identifier associated with every object. | [optional] |
| notes | str | DACC internal notes. | [optional] |
| aliases | List[str] | Lab specific identifiers to reference an object. | [optional] |
| creation_timestamp | str | The date the object was created. | [optional] |
| submitted_by | str | The user who submitted the object. | [optional] |
| submitter_comment | str | Additional information specified by the submitter to be displayed as a comment on the portal. | [optional] |
| description | str | A plain text description of the object. | [optional] |
| dbxrefs | List[str] | Identifiers from external resources that may have 1-to-1 or 1-to-many relationships with IGVF file sets. | [optional] |
| samples | List[str] | The sample(s) associated with this file set. | [optional] |
| donors | List[str] | The donors of the samples associated with this measurement set. | [optional] |
| file_set_type | str | The category that best describes this measurement set. | [optional] |
| assay_term | str | The assay used to produce data in this measurement set. | [optional] |
| library_construction_platform | str | The platform used to construct the library sequenced in this measurement set. | [optional] |
| protocols | List[str] | Links to the protocol(s) for conducting the assay on Protocols.io. | [optional] |
| preferred_assay_title | str | The custom lab preferred label for the experiment performed in this measurement set. | [optional] |
| multiome_size | int | The number of datasets included in the multiome experiment this measurement set is a part of. | [optional] |
| control_file_sets | List[str] | File sets that can serve as scientific controls for this measurement_set. | [optional] |
| sequencing_library_types | List[str] | Description of the libraries sequenced in this measurement set. | [optional] |
| auxiliary_sets | List[str] | The auxiliary sets of files produced alongside raw data from this measurement set. | [optional] |
| external_image_url | str | Links to the external site where images produced by this measurement are stored. | [optional] |
| targeted_genes | List[str] | A list of genes targeted in this assay. For example, TF ChIP-seq attempts to identify binding sites of a protein encoded by a specific gene. In CRISPR FlowFISH, the modified samples are sorted based on expression of a specific gene. This property differs from small_scale_gene_list in Construct Library Set, which describes genes targeted by the content integrated in the constructs (such as guide RNAs.) | [optional] |
| id | str | [optional] | |
| type | List[str] | [optional] | |
| summary | str | [optional] | |
| files | List[str] | The files associated with this file set. | [optional] |
| control_for | List[str] | The file sets for which this file set is a control. | [optional] |
| submitted_files_timestamp | str | The timestamp the first file object in the file_set or associated auxiliary sets was created. | [optional] |
| input_file_set_for | List[str] | The file sets that use this file set as an input. | [optional] |
| related_multiome_datasets | List[str] | Related datasets included in the multiome experiment this measurement set is a part of. | [optional] |
from igvf_client.models.measurement_set import MeasurementSet
# TODO update the JSON string below
json = "{}"
# create an instance of MeasurementSet from a JSON string
measurement_set_instance = MeasurementSet.from_json(json)
# print the JSON string representation of the object
print(MeasurementSet.to_json())
# convert the object into a dict
measurement_set_dict = measurement_set_instance.to_dict()
# create an instance of MeasurementSet from a dict
measurement_set_from_dict = MeasurementSet.from_dict(measurement_set_dict)